HHsearch alignment for GI: 254780824 and conserved domain: cd00877
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=93.80 E-value=0.22 Score=29.01 Aligned_cols=84 Identities=15% Similarity=0.198 Sum_probs=49.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHH---HCCCCCCEEEEEEECCCCHHHHHCCCHHHHCC--CCEE
Q ss_conf 999878786889999999976078885302452020110---03788608999865178977753058367508--9789
Q gi|254780824|r 36 LTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQ---LYDASIPVAHFDFYRLSSHQEVVELGFDEILN--ERIC 110 (162)
Q Consensus 36 i~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~---~Y~~~~~i~H~DlYRL~~~~E~~~lg~~e~~~--~~i~ 110 (162)
T Consensus 3 ivlvGd~~VGKTsli~r~~~~~f~-~---~~~~Tig~~~~~~~~~~~~~~v~l~iwDtaGqe~~~~l-~~~y~~~a~~~i 77 (166)
T cd00877 3 LVLVGDGGTGKTTFVKRHLTGEFE-K---KYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGL-RDGYYIGGQCAI 77 (166)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCC-C---CCCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHHHH-HHHHHCCCCEEE
T ss_conf 999999998889999999839999-9---86873255679999999997999999975787156668-788740065799
Q ss_pred EE-------------ECHHHHHCCCCC
Q ss_conf 99-------------985563204995
Q gi|254780824|r 111 II-------------EWPEIGRSLLPK 124 (162)
Q Consensus 111 lI-------------EWpe~~~~~lp~ 124 (162)
T Consensus 78 lvyDvt~~~Sf~~v~~w~~~i~~~~~~ 104 (166)
T cd00877 78 IMFDVTSRVTYKNVPNWHRDLVRVCGN 104 (166)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 843789888999999999999986899