HHsearch alignment for GI: 254780824 and conserved domain: cd00877

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=93.80  E-value=0.22  Score=29.01  Aligned_cols=84  Identities=15%  Similarity=0.198  Sum_probs=49.6

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHH---HCCCCCCEEEEEEECCCCHHHHHCCCHHHHCC--CCEE
Q ss_conf             999878786889999999976078885302452020110---03788608999865178977753058367508--9789
Q gi|254780824|r   36 LTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQ---LYDASIPVAHFDFYRLSSHQEVVELGFDEILN--ERIC  110 (162)
Q Consensus        36 i~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~---~Y~~~~~i~H~DlYRL~~~~E~~~lg~~e~~~--~~i~  110 (162)
T Consensus         3 ivlvGd~~VGKTsli~r~~~~~f~-~---~~~~Tig~~~~~~~~~~~~~~v~l~iwDtaGqe~~~~l-~~~y~~~a~~~i   77 (166)
T cd00877           3 LVLVGDGGTGKTTFVKRHLTGEFE-K---KYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGL-RDGYYIGGQCAI   77 (166)
T ss_pred             EEEECCCCCCHHHHHHHHHHCCCC-C---CCCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHHHH-HHHHHCCCCEEE
T ss_conf             999999998889999999839999-9---86873255679999999997999999975787156668-788740065799


Q ss_pred             EE-------------ECHHHHHCCCCC
Q ss_conf             99-------------985563204995
Q gi|254780824|r  111 II-------------EWPEIGRSLLPK  124 (162)
Q Consensus       111 lI-------------EWpe~~~~~lp~  124 (162)
T Consensus        78 lvyDvt~~~Sf~~v~~w~~~i~~~~~~  104 (166)
T cd00877          78 IMFDVTSRVTYKNVPNWHRDLVRVCGN  104 (166)
T ss_pred             EECCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf             843789888999999999999986899