HHsearch alignment for GI: 254780824 and conserved domain: cd01130
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.10 E-value=0.00072 Score=44.06 Aligned_cols=43 Identities=23% Similarity=0.330 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 9999999998458996999987878688999999997607888
Q gi|254780824|r 19 TICLGRHLASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHDD 61 (162)
Q Consensus 19 t~~la~~la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~ 61 (162)
T Consensus 11 ~~~~~~~L~~~v~~~~nIlIsG~tGSGKTTll~al~~~i~~~~ 53 (186)
T cd01130 11 SPLQAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDE 53 (186)
T ss_pred CHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHCCCCC
T ss_conf 9999999999998599899989999989999999996133456