HHsearch alignment for GI: 254780824 and conserved domain: cd01394
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=93.27 E-value=0.15 Score=30.03 Aligned_cols=40 Identities=20% Similarity=0.191 Sum_probs=32.7
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 9999999845899699998787868899999999760788
Q gi|254780824|r 21 CLGRHLASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 21 ~la~~la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
T Consensus 7 ~lD~vLgGGi~~G~it~i~G~pG~GKStl~lq~a~~~~~~ 46 (218)
T cd01394 7 GLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQ 46 (218)
T ss_pred HHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 8999856998788799998999984999999999998636