HHsearch alignment for GI: 254780824 and conserved domain: cd01862
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=94.79 E-value=0.081 Score=31.65 Aligned_cols=73 Identities=12% Similarity=0.206 Sum_probs=42.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHH---HHHCCCCCCEEEEEEECCCCHHHHHCCCHHHHCC-CCEEE
Q ss_conf 9998787868899999999760788853024520201---1003788608999865178977753058367508-97899
Q gi|254780824|r 36 LTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTL---VQLYDASIPVAHFDFYRLSSHQEVVELGFDEILN-ERICI 111 (162)
Q Consensus 36 i~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l---~~~Y~~~~~i~H~DlYRL~~~~E~~~lg~~e~~~-~~i~l 111 (162)
T Consensus 3 ivlvGd~~VGKTsli~r~~~~~f~~----~y~~Tig~d~~~k~i~~~~~~~~l~iwDtaG~e~~~~l~~~~~~~a~~~il 78 (172)
T cd01862 3 VIILGDSGVGKTSLMNQYVNKKFSN----QYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVL 78 (172)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCC----CCCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHHHCCEEEE
T ss_conf 9999989978999999995298898----757755516999999999999999999699983110688998652757999
Q ss_pred E
Q ss_conf 9
Q gi|254780824|r 112 I 112 (162)
Q Consensus 112 I 112 (162)
T Consensus 79 v 79 (172)
T cd01862 79 V 79 (172)
T ss_pred E
T ss_conf 9