HHsearch alignment for GI: 254780824 and conserved domain: cd01867
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=93.00 E-value=0.3 Score=28.24 Aligned_cols=83 Identities=14% Similarity=0.175 Sum_probs=43.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHH---HHCCCCCCEEEEEEECCCCHHHHHCCCHHHHCC--CCEE
Q ss_conf 99987878688999999997607888530245202011---003788608999865178977753058367508--9789
Q gi|254780824|r 36 LTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLV---QLYDASIPVAHFDFYRLSSHQEVVELGFDEILN--ERIC 110 (162)
Q Consensus 36 i~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~---~~Y~~~~~i~H~DlYRL~~~~E~~~lg~~e~~~--~~i~ 110 (162)
T Consensus 6 ivlvGd~~vGKTsli~r~~~~~f~~~----~~~Tig~~~~~k~v~~~~~~i~l~iwDt~G~e~~~~~-~~~y~~~a~~~i 80 (167)
T cd01867 6 LLLIGDSGVGKSCLLLRFSEDSFNPS----FISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTI-TTAYYRGAMGII 80 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCC----CCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCHHHH-HHHHHHHCCEEE
T ss_conf 99999999788999999960999998----6898646889999999999999999989997001166-799856505889
Q ss_pred EE-------------ECHHHHHCCCC
Q ss_conf 99-------------98556320499
Q gi|254780824|r 111 II-------------EWPEIGRSLLP 123 (162)
Q Consensus 111 lI-------------EWpe~~~~~lp 123 (162)
T Consensus 81 lvfdit~~~Sf~~~~~w~~~i~~~~~ 106 (167)
T cd01867 81 LVYDITDEKSFENIRNWMRNIEEHAS 106 (167)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 95568987999999999999998669