HHsearch alignment for GI: 254780824 and conserved domain: cd03221
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.00 E-value=0.0079 Score=37.75 Aligned_cols=74 Identities=27% Similarity=0.452 Sum_probs=42.7
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCHHHHHCCCHHHHC-C-
Q ss_conf 45899699998787868899999999760788853024520201100378860899986517897775305836750-8-
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYDASIPVAHFDFYRLSSHQEVVELGFDEIL-N- 106 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~~~~~i~H~DlYRL~~~~E~~~lg~~e~~-~- 106 (162)
T Consensus 22 ~i~~ge~~~l~G~NGsGKTTl~~~l~G~~~~~------~G~i~----~~~~~~i~y~~--QLS-gGqkqr~~la~al~~~ 88 (144)
T cd03221 22 TINPGDRIGLVGRNGAGKSTLLKLIAGELEPD------EGIVT----WGSTVKIGYFE--QLS-GGEKMRLALAKLLLEN 88 (144)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCC------CEEEE----ECCCCEEEEEH--HCC-HHHHHHHHHHHHHCCC
T ss_conf 98799999999899984999999984898898------50999----99960899870--079-9999999999997259
Q ss_pred CCEEEEECH
Q ss_conf 978999985
Q gi|254780824|r 107 ERICIIEWP 115 (162)
Q Consensus 107 ~~i~lIEWp 115 (162)
T Consensus 89 p~iliLDEP 97 (144)
T cd03221 89 PNLLLLDEP 97 (144)
T ss_pred CCEEEEECC
T ss_conf 989999577