>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

Probab=95.74  E-value=0.012  Score=36.58  Aligned_cols=32  Identities=19%  Similarity=0.454  Sum_probs=27.4

Q ss_pred             HCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf             45899699998787868899999999760788
Q gi|254780824|r   29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD   60 (162)
Q Consensus        29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~   60 (162)
T Consensus        21 ~v~~GEiv~ilGpNGaGKSTllk~i~G~l~p~   52 (177)
T cd03222          21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLIPN   52 (177)
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf             55899899998999999999999996886788