HHsearch alignment for GI: 254780824 and conserved domain: cd03223
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.94 E-value=0.0071 Score=38.05 Aligned_cols=41 Identities=27% Similarity=0.360 Sum_probs=30.2
Q ss_pred HHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 984589969999878786889999999976078885302452
Q gi|254780824|r 27 ASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSP 68 (162)
Q Consensus 27 a~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SP 68 (162)
T Consensus 21 sl~i~~Ge~v~i~G~sGsGKSTLl~~l~Gl~~~~~-G~i~~~ 61 (166)
T cd03223 21 SFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGS-GRIGMP 61 (166)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCC-CEEEEC
T ss_conf 88988999999995899988999999869876998-679976