HHsearch alignment for GI: 254780824 and conserved domain: cd03224
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=95.89 E-value=0.0093 Score=37.35 Aligned_cols=32 Identities=28% Similarity=0.468 Sum_probs=27.7
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 45899699998787868899999999760788
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
T Consensus 22 ~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~ 53 (222)
T cd03224 22 TVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR 53 (222)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 98899899999999985999999997798899