HHsearch alignment for GI: 254780824 and conserved domain: cd03236

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.96  E-value=0.0078  Score=37.81  Aligned_cols=30  Identities=33%  Similarity=0.365  Sum_probs=25.6

Q ss_conf             899699998787868899999999760788
Q gi|254780824|r   31 RLGDCLTLSGDLGSGKSFLARSIIRFLMHD   60 (162)
Q Consensus        31 ~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~   60 (162)
T Consensus        24 k~GEi~gLiGpNGaGKSTLlk~i~Gll~P~   53 (255)
T cd03236          24 REGQVLGLVGPNGIGKSTALKILAGKLKPN   53 (255)
T ss_conf             898099998999970999999996798688