HHsearch alignment for GI: 254780824 and conserved domain: cd03240

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=95.19  E-value=0.024  Score=34.81  Aligned_cols=28  Identities=18%  Similarity=0.252  Sum_probs=23.8

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             8996999987878688999999997607
Q gi|254780824|r   31 RLGDCLTLSGDLGSGKSFLARSIIRFLM   58 (162)
Q Consensus        31 ~~g~ii~L~GdLGaGKTtfvr~i~~~lg   58 (162)
T Consensus        20 f~~~itaivG~NGaGKSTLl~~i~~~l~   47 (204)
T cd03240          20 FFSPLTLIVGQNGAGKTTIIEALKYALT   47 (204)
T ss_pred             EECCEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf             5088899998999999999999863047