HHsearch alignment for GI: 254780824 and conserved domain: cd03251
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.76 E-value=0.012 Score=36.75 Aligned_cols=32 Identities=41% Similarity=0.507 Sum_probs=27.4
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 45899699998787868899999999760788
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
T Consensus 24 ~i~~Ge~i~IvG~sGsGKSTLl~ll~gl~~p~ 55 (234)
T cd03251 24 DIPAGETVALVGPSGSGKSTLVNLIPRFYDVD 55 (234)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 98799999999899982999999996676678