>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

Probab=95.62  E-value=0.014  Score=36.32  Aligned_cols=33  Identities=33%  Similarity=0.561  Sum_probs=28.0

Q ss_pred             HHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf             845899699998787868899999999760788
Q gi|254780824|r   28 SILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD   60 (162)
Q Consensus        28 ~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~   60 (162)
T Consensus        23 ~~i~~G~~vaivG~sGsGKSTll~ll~gl~~p~   55 (237)
T cd03252          23 LRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPE   55 (237)
T ss_pred             EEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf             998799999999999985999999996776579