HHsearch alignment for GI: 254780824 and conserved domain: cd03263

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.30  E-value=0.02  Score=35.39  Aligned_cols=32  Identities=22%  Similarity=0.254  Sum_probs=27.6

Q ss_pred             HCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf             45899699998787868899999999760788
Q gi|254780824|r   29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD   60 (162)
Q Consensus        29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~   60 (162)
T Consensus        24 ~i~~Gei~~llG~NGaGKSTLl~~i~Gl~~p~   55 (220)
T cd03263          24 NVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT   55 (220)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf             98499599999899973999999996698788