HHsearch alignment for GI: 254780824 and conserved domain: cd03271

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.50  E-value=0.045  Score=33.18  Aligned_cols=26  Identities=35%  Similarity=0.406  Sum_probs=22.7

Q ss_conf             45899699998787868899999999
Q gi|254780824|r   29 ILRLGDCLTLSGDLGSGKSFLARSII   54 (162)
Q Consensus        29 ~l~~g~ii~L~GdLGaGKTtfvr~i~   54 (162)
T Consensus        17 ~i~~G~~~aIiG~sGsGKSTLl~~~L   42 (261)
T cd03271          17 DIPLGVLTCVTGVSGSGKSSLINDTL   42 (261)
T ss_conf             98899999998799986999999998