HHsearch alignment for GI: 254780824 and conserved domain: cd03296
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.02 E-value=0.025 Score=34.75 Aligned_cols=32 Identities=31% Similarity=0.332 Sum_probs=27.0
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 84589969999878786889999999976078
Q gi|254780824|r 28 SILRLGDCLTLSGDLGSGKSFLARSIIRFLMH 59 (162)
Q Consensus 28 ~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~ 59 (162)
T Consensus 23 ~~v~~Ge~~~iiGpSGsGKSTll~~i~Gl~~p 54 (239)
T cd03296 23 LDIPSGELVALLGPSGSGKTTLLRLIAGLERP 54 (239)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 69889989999999997799999999769999