HHsearch alignment for GI: 254780824 and conserved domain: cd03300

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.06  E-value=0.025  Score=34.72  Aligned_cols=31  Identities=35%  Similarity=0.469  Sum_probs=26.6

Q ss_pred             HCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf             4589969999878786889999999976078
Q gi|254780824|r   29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMH   59 (162)
Q Consensus        29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~   59 (162)
T Consensus        22 ~v~~Ge~~~iiGpSGsGKSTllr~i~Gl~~p   52 (232)
T cd03300          22 DIKEGEFFTLLGPSGCGKTTLLRLIAGFETP   52 (232)
T ss_pred             EECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf             8879989999999998399999999779999