HHsearch alignment for GI: 254780824 and conserved domain: cd04116

>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=93.36  E-value=0.26  Score=28.57  Aligned_cols=72  Identities=15%  Similarity=0.172  Sum_probs=41.3

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHH---HHCCCCCCEEEEEEECCCCHHHHHCCCHHHHCC--CCEE
Q ss_conf             99987878688999999997607888530245202011---003788608999865178977753058367508--9789
Q gi|254780824|r   36 LTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLV---QLYDASIPVAHFDFYRLSSHQEVVELGFDEILN--ERIC  110 (162)
Q Consensus        36 i~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~---~~Y~~~~~i~H~DlYRL~~~~E~~~lg~~e~~~--~~i~  110 (162)
T Consensus         8 ivvlGd~~VGKTsli~r~~~~~f~~~----~~~Tig~~~~~k~i~~~~~~v~l~iwDtaG~e~~~~l-~~~~~~~a~~~i   82 (170)
T cd04116           8 VILLGDGGVGKSSLMNRYVTNKFDTQ----LFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSL-RTPFYRGSDCCL   82 (170)
T ss_pred             EEEECCCCCCHHHHHHHHHHCCCCCC----CCCCCEEEEEEEEEEECCEEEEEEEEECCCCCCCCCC-HHHHEECCCEEE
T ss_conf             99999999789999999973989998----8887607989999999999999999989997243524-176600477339


Q ss_pred             EE
Q ss_conf             99
Q gi|254780824|r  111 II  112 (162)
Q Consensus       111 lI  112 (162)
T Consensus        83 lv   84 (170)
T cd04116          83 LT   84 (170)
T ss_pred             EE
T ss_conf             99