HHsearch alignment for GI: 254780824 and conserved domain: cd04125

>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=94.78  E-value=0.095  Score=31.26  Aligned_cols=84  Identities=12%  Similarity=0.176  Sum_probs=49.5

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHH---HHCCCCCCEEEEEEECCCCHHHHHCCCHHHHCC--CCEE
Q ss_conf             99987878688999999997607888530245202011---003788608999865178977753058367508--9789
Q gi|254780824|r   36 LTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLV---QLYDASIPVAHFDFYRLSSHQEVVELGFDEILN--ERIC  110 (162)
Q Consensus        36 i~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~---~~Y~~~~~i~H~DlYRL~~~~E~~~lg~~e~~~--~~i~  110 (162)
T Consensus         3 ivvvGd~~VGKTsli~r~~~~~f~~~----~~~Tig~~~~~k~i~~~~~~~~l~iwDtaG~e~~~~l-~~~~~~~a~~~i   77 (188)
T cd04125           3 VVIIGDYGVGKSSLLKRFTEDEFSES----TKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSL-NNSYYRGAHGYL   77 (188)
T ss_pred             EEEECCCCCCHHHHHHHHHHCCCCCC----CCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHHHH-HHHHHCCCCEEE
T ss_conf             99999999789999999951968998----6886540357999999999999999989997104578-999863786799


Q ss_pred             EE-------------ECHHHHHCCCCC
Q ss_conf             99-------------985563204995
Q gi|254780824|r  111 II-------------EWPEIGRSLLPK  124 (162)
Q Consensus       111 lI-------------EWpe~~~~~lp~  124 (162)
T Consensus        78 lvydit~~~Sf~~l~~w~~~i~~~~~~  104 (188)
T cd04125          78 LVYDVTDQESFENLKFWINEINRYARE  104 (188)
T ss_pred             EEECCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf             980389878999999999999987898