HHsearch alignment for GI: 254780824 and conserved domain: cd04139
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=93.51 E-value=0.24 Score=28.79 Aligned_cols=70 Identities=17% Similarity=0.252 Sum_probs=41.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCC----CCCCEEEEEEECCCCHHHHHCCCHHHHCC--CCE
Q ss_conf 999878786889999999976078885302452020110037----88608999865178977753058367508--978
Q gi|254780824|r 36 LTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYD----ASIPVAHFDFYRLSSHQEVVELGFDEILN--ERI 109 (162)
Q Consensus 36 i~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~----~~~~i~H~DlYRL~~~~E~~~lg~~e~~~--~~i 109 (162)
T Consensus 3 vvlvGd~~VGKTsli~r~~~~~F~~~----y~pTi~--~~~~~~~~~~~~~v~l~iwDtaG~e~~~~l~-~~~~~~a~~~ 75 (164)
T cd04139 3 VIVVGAGGVGKSALTLQFMYDEFVED----YEPTKA--DSYRKKVVLDGEDVQLNILDTAGQEDYAAIR-DNYHRSGEGF 75 (164)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCC----CCCCCC--CEEEEEEEECCEEEEEEEEECCCCHHHHHHH-HHHHHHCCEE
T ss_conf 99999999889999999971989877----488544--1689999999999999999898866248899-9988637688
Q ss_pred EEE
Q ss_conf 999
Q gi|254780824|r 110 CII 112 (162)
Q Consensus 110 ~lI 112 (162)
T Consensus 76 ilv 78 (164)
T cd04139 76 LLV 78 (164)
T ss_pred EEE
T ss_conf 999