HHsearch alignment for GI: 254780824 and conserved domain: cd04141

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=93.30  E-value=0.33  Score=27.97  Aligned_cols=70  Identities=23%  Similarity=0.324  Sum_probs=42.3

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCC----CCCEEEEEEECCCCHHHHHCCCHHHHCC--CCE
Q ss_conf             9998787868899999999760788853024520201100378----8608999865178977753058367508--978
Q gi|254780824|r   36 LTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYDA----SIPVAHFDFYRLSSHQEVVELGFDEILN--ERI  109 (162)
Q Consensus        36 i~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~~----~~~i~H~DlYRL~~~~E~~~lg~~e~~~--~~i  109 (162)
T Consensus         5 iv~lGd~~VGKTsli~r~~~~~f~~----~~~pTi~--~~~~~~i~i~~~~~~l~iwDtaGqe~~~~l-~~~~~r~a~~~   77 (172)
T cd04141           5 IVMLGAGGVGKSAVTMQFISHSFPD----YHDPTIE--DAYKQQARIDNEPALLDILDTAGQAEFTAM-RDQYMRCGEGF   77 (172)
T ss_pred             EEEECCCCCCHHHHHHHHHHCCCCC----CCCCCCC--CCEEEEEEECCEEEEEEEEECCCCCCCCCC-HHHHHCCCCEE
T ss_conf             9999999977999999997098998----7588422--203699999999999999978885135745-15564278656


Q ss_pred             EEE
Q ss_conf             999
Q gi|254780824|r  110 CII  112 (162)
Q Consensus       110 ~lI  112 (162)
T Consensus        78 ilv   80 (172)
T cd04141          78 IIC   80 (172)
T ss_pred             EEE
T ss_conf             887