HHsearch alignment for GI: 254780824 and conserved domain: cd04141
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=93.30 E-value=0.33 Score=27.97 Aligned_cols=70 Identities=23% Similarity=0.324 Sum_probs=42.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCC----CCCEEEEEEECCCCHHHHHCCCHHHHCC--CCE
Q ss_conf 9998787868899999999760788853024520201100378----8608999865178977753058367508--978
Q gi|254780824|r 36 LTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYDA----SIPVAHFDFYRLSSHQEVVELGFDEILN--ERI 109 (162)
Q Consensus 36 i~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~~----~~~i~H~DlYRL~~~~E~~~lg~~e~~~--~~i 109 (162)
T Consensus 5 iv~lGd~~VGKTsli~r~~~~~f~~----~~~pTi~--~~~~~~i~i~~~~~~l~iwDtaGqe~~~~l-~~~~~r~a~~~ 77 (172)
T cd04141 5 IVMLGAGGVGKSAVTMQFISHSFPD----YHDPTIE--DAYKQQARIDNEPALLDILDTAGQAEFTAM-RDQYMRCGEGF 77 (172)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCC----CCCCCCC--CCEEEEEEECCEEEEEEEEECCCCCCCCCC-HHHHHCCCCEE
T ss_conf 9999999977999999997098998----7588422--203699999999999999978885135745-15564278656
Q ss_pred EEE
Q ss_conf 999
Q gi|254780824|r 110 CII 112 (162)
Q Consensus 110 ~lI 112 (162)
T Consensus 78 ilv 80 (172)
T cd04141 78 IIC 80 (172)
T ss_pred EEE
T ss_conf 887