HHsearch alignment for GI: 254780824 and conserved domain: cd04157

>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=94.90  E-value=0.059  Score=32.47  Aligned_cols=72  Identities=14%  Similarity=0.223  Sum_probs=38.5

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCHHHHHCCCHHHHCC--CCEEEE
Q ss_conf             99987878688999999997607888530245202011003788608999865178977753058367508--978999
Q gi|254780824|r   36 LTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYDASIPVAHFDFYRLSSHQEVVELGFDEILN--ERICII  112 (162)
Q Consensus        36 i~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~~~~~i~H~DlYRL~~~~E~~~lg~~e~~~--~~i~lI  112 (162)
T Consensus         2 Il~lGl~~sGKTtil~~l~~~~~~~~---~~~pT~G~-~~~~~~~~~~~~~iwD~~G~~~~r~l-w~~y~~~~~~iI~V   75 (162)
T cd04157           2 ILVVGLDNSGKTTIINQLKPENAQSQ---IIVPTVGF-NVESFEKGNLSFTAFDMSGQGKYRGL-WEHYYKNIQGIIFV   75 (162)
T ss_pred             EEEECCCCCCHHHHHHHHHCCCCCCC---CCCCCCCE-EEEEEEECCEEEEEEECCCCCCCCHH-HHHHHCCCCEEEEE
T ss_conf             99999999988999999972898756---41685075-78999839988999985887442055-89870567448999