HHsearch alignment for GI: 254780824 and conserved domain: cd04176

>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=93.70  E-value=0.29  Score=28.34  Aligned_cols=70  Identities=14%  Similarity=0.292  Sum_probs=42.1

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCC----CCCCEEEEEEECCCCHHHHHCCCHHHHCC--CCE
Q ss_conf             999878786889999999976078885302452020110037----88608999865178977753058367508--978
Q gi|254780824|r   36 LTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYD----ASIPVAHFDFYRLSSHQEVVELGFDEILN--ERI  109 (162)
Q Consensus        36 i~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~----~~~~i~H~DlYRL~~~~E~~~lg~~e~~~--~~i  109 (162)
T Consensus         4 ivllGd~~VGKTsli~r~~~~~f~~~----y~pTi~--~~~~k~i~~~~~~~~l~iwDtaG~e~~~~~-~~~~~~~a~~~   76 (163)
T cd04176           4 VVVLGSGGVGKSALTVQFVSGTFIEK----YDPTIE--DFYRKEIEVDSSPSVLEILDTAGTEQFASM-RDLYIKNGQGF   76 (163)
T ss_pred             EEEECCCCCCHHHHHHHHHHCCCCCC----CCCCCC--CEEEEEEEECCEEEEEEEEECCCCHHHHHH-HHHHHCCCCEE
T ss_conf             99989999789999999970989975----588523--316799998889999999989885425678-89985578656


Q ss_pred             EEE
Q ss_conf             999
Q gi|254780824|r  110 CII  112 (162)
Q Consensus       110 ~lI  112 (162)
T Consensus        77 ilv   79 (163)
T cd04176          77 IVV   79 (163)
T ss_pred             EEE
T ss_conf             897