HHsearch alignment for GI: 254780824 and conserved domain: pfam05496

>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.

Probab=95.30  E-value=0.04  Score=33.52  Aligned_cols=50  Identities=24%  Similarity=0.234  Sum_probs=32.5

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHH----HHHHCC--CCCCEEEEE
Q ss_conf             999878786889999999976078885302452020----110037--886089998
Q gi|254780824|r   36 LTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFT----LVQLYD--ASIPVAHFD   86 (162)
Q Consensus        36 i~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~----l~~~Y~--~~~~i~H~D   86 (162)
T Consensus        53 ~lf~GPPG~GKTTlAriiAk~~~~~~~-~~s~~~i~~~~di~~~l~~~~~~~ILFID  108 (234)
T pfam05496        53 VLLYGPPGLGKTTLANIIANEMGVNIR-ITSGPALEKPGDLAAILTNLEPGDVLFID  108 (234)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCEE-EECCHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf             788789999888999999984087537-61426664389999999845899889996