HHsearch alignment for GI: 254780824 and conserved domain: pfam06068
>pfam06068 TIP49 TIP49 C-terminus. This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear
Probab=93.47 E-value=0.28 Score=28.43 Aligned_cols=38 Identities=26% Similarity=0.448 Sum_probs=30.2
Q ss_pred HHHHHHHCC----CCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 999998458----99699998787868899999999760788
Q gi|254780824|r 23 GRHLASILR----LGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 23 a~~la~~l~----~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
T Consensus 36 agiiv~mIk~~K~aGraiLlaGppGTGKTAlA~aiakeLG~~ 77 (395)
T pfam06068 36 AGVIVEMIKEGKIAGRAVLIAGPPGTGKTALAIAISKELGED 77 (395)
T ss_pred HHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 899999997277577389987799988899999999974879