HHsearch alignment for GI: 254780824 and conserved domain: pfam08298
>pfam08298 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.65 E-value=0.0061 Score=38.44 Aligned_cols=51 Identities=25% Similarity=0.305 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHCCC----CCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 89999999999984589----96999987878688999999997607888530245202011
Q gi|254780824|r 16 EKNTICLGRHLASILRL----GDCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLV 73 (162)
Q Consensus 16 ~~~t~~la~~la~~l~~----g~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~ 73 (162)
T Consensus 64 e~~i~~iV~~~ksAA~g~e~~kqIllL~GPVGsGKSsl~e~LK~glE~-------y~~Y~i~ 118 (358)
T pfam08298 64 EETIERIVNYFRHAAQGLEERKQILYLLGPVGGGKSSLAERLKKLLEL-------VPIYALK 118 (358)
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCC-------CCEEEEC
T ss_conf 999999999999997236721058999778987758999999987205-------8648844