HHsearch alignment for GI: 254780824 and conserved domain: smart00174
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=93.83 E-value=0.18 Score=29.62 Aligned_cols=83 Identities=18% Similarity=0.238 Sum_probs=45.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHC----CCCCCEEEEEEECCCCHHHHHCCCHHHHCC-CCEE
Q ss_conf 99987878688999999997607888530245202011003----788608999865178977753058367508-9789
Q gi|254780824|r 36 LTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLY----DASIPVAHFDFYRLSSHQEVVELGFDEILN-ERIC 110 (162)
Q Consensus 36 i~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y----~~~~~i~H~DlYRL~~~~E~~~lg~~e~~~-~~i~ 110 (162)
T Consensus 1 ivllGd~~VGKTsli~r~~~~~f~~----~y~~Ti--~~~~~~~~~~~~~~~~l~i~DtaG~e~~~~l~~~~~~~a~~~i 74 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPE----DYVPTV--FENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFL 74 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCC----CCCCCE--EEEEEEEEEECCEEEEEEEEECCCCCCCCCCCHHHCCCCCEEE
T ss_conf 5998978975999999995398999----857850--5789999999999999999948987034545001104886899
Q ss_pred EE-------------E-CHHHHHCCCCC
Q ss_conf 99-------------9-85563204995
Q gi|254780824|r 111 II-------------E-WPEIGRSLLPK 124 (162)
Q Consensus 111 lI-------------E-Wpe~~~~~lp~ 124 (162)
T Consensus 75 lvydvt~~~Sf~~~~~~w~~~i~~~~~~ 102 (174)
T smart00174 75 ICFSVDSPASFENVKEKWYPEVKHFCPN 102 (174)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9975898789999999899999986889