BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780824|ref|YP_003065237.1| hypothetical protein
CLIBASIA_03585 [Candidatus Liberibacter asiaticus str. psy62]
(162 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780824|ref|YP_003065237.1| hypothetical protein CLIBASIA_03585 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 162
Score = 335 bits (858), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 162/162 (100%), Positives = 162/162 (100%)
Query: 1 MNFSEKHLTVIPIPNEKNTICLGRHLASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60
MNFSEKHLTVIPIPNEKNTICLGRHLASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD
Sbjct: 1 MNFSEKHLTVIPIPNEKNTICLGRHLASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60
Query: 61 DALEVLSPTFTLVQLYDASIPVAHFDFYRLSSHQEVVELGFDEILNERICIIEWPEIGRS 120
DALEVLSPTFTLVQLYDASIPVAHFDFYRLSSHQEVVELGFDEILNERICIIEWPEIGRS
Sbjct: 61 DALEVLSPTFTLVQLYDASIPVAHFDFYRLSSHQEVVELGFDEILNERICIIEWPEIGRS 120
Query: 121 LLPKKYIDIHLSQGKTGRKATISAERWIISHINQMNRSTSQQ 162
LLPKKYIDIHLSQGKTGRKATISAERWIISHINQMNRSTSQQ
Sbjct: 121 LLPKKYIDIHLSQGKTGRKATISAERWIISHINQMNRSTSQQ 162
>gi|254780826|ref|YP_003065239.1| phosphoenolpyruvate carboxykinase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 509
Score = 25.4 bits (54), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 34 DCLTLSGDLGSGKSFLARSIIRFLMHDD 61
D G G+GK+ L+ S+ RFL+ DD
Sbjct: 219 DVALFFGLSGTGKTTLSASVDRFLIGDD 246
>gi|254780925|ref|YP_003065338.1| bifunctional preprotein translocase subunit SecD/SecF [Candidatus
Liberibacter asiaticus str. psy62]
Length = 833
Score = 25.0 bits (53), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 7/115 (6%)
Query: 7 HLTVIPIPNEKNTICLGRHLASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHDDALEVL 66
H +I +P E++ L + L + ++ L + S K F+ +RFL D + L
Sbjct: 187 HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNN--SKKGFMFG--VRFLRDSDGNQYL 242
Query: 67 SPTFTLVQLYDASIPVAHFDFYRLSSHQEVVELGFDEILNERICIIEWPEIGRSL 121
+ + A+FD +H+ VV++ FDE+ R + IG+ L
Sbjct: 243 VEDKVEISGIHLNGATANFD---PKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
>gi|255764514|ref|YP_003065586.2| DNA repair protein RecN [Candidatus Liberibacter asiaticus str.
psy62]
Length = 554
Score = 24.6 bits (52), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 38 LSGDLGSGKSFLARSII 54
LSGD GSGKS L ++I
Sbjct: 26 LSGDTGSGKSILLDALI 42
>gi|254780193|ref|YP_003064606.1| lipid A ABC exporter family, fused ATPase and inner membrane
subunits [Candidatus Liberibacter asiaticus str. psy62]
Length = 528
Score = 24.3 bits (51), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 33 GDCLTLSGDLGSGKSFLARSIIRF 56
G+ + L GD G+GK+ + I+RF
Sbjct: 316 GETIALVGDSGAGKTSIFSLILRF 339
>gi|254780340|ref|YP_003064753.1| proline/glycine betaine ABC transporter, ATP-binding protein
[Candidatus Liberibacter asiaticus str. psy62]
Length = 348
Score = 23.9 bits (50), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 30 LRLGDCLTLSGDLGSGKSFLARSI 53
++ G+ L L G G+GKS L RSI
Sbjct: 52 VKKGEILVLMGLSGAGKSTLLRSI 75
>537021.9.peg.472_1
Length = 369
Score = 23.9 bits (50), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 31 RLGDCLTLSGDLGSGKSFLARSIIRFLMHDDA 62
R+ LSG G GK+ AR I R L + A
Sbjct: 19 RIAQSYMLSGTRGIGKTTTARIIARSLNYKTA 50
>gi|254780724|ref|YP_003065137.1| component of type IV pilus [Candidatus Liberibacter asiaticus str.
psy62]
Length = 483
Score = 23.5 bits (49), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 23 GRHLASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTL 72
R L I R+ + +SG GSGK+ L + R++ D+ + T L
Sbjct: 240 ARLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAEL 289
>gi|254780531|ref|YP_003064944.1| flagellin domain-containing protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 452
Score = 23.1 bits (48), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 38 LSGDLGSGKSFLARSIIRFLMHDDALEV 65
L DLGS + +A+S+I + DD +V
Sbjct: 134 LRTDLGSSTASIAKSVIGSFIRDDNGKV 161
>gi|254780831|ref|YP_003065244.1| hypothetical protein CLIBASIA_03620 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 341
Score = 22.7 bits (47), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 8 LTVIPIPNEKNTICLGRHLASILRLGDCLTLS 39
L V+ IP EKN I + L+ I + + + LS
Sbjct: 13 LKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLS 44
>gi|254780945|ref|YP_003065358.1| ATP-dependent DNA helicase RecG [Candidatus Liberibacter asiaticus
str. psy62]
Length = 700
Score = 22.7 bits (47), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 38 LSGDLGSGKSFLA 50
L GD+GSGK+ +A
Sbjct: 298 LQGDVGSGKTLVA 310
>gi|254780881|ref|YP_003065294.1| Mrp protein [Candidatus Liberibacter asiaticus str. psy62]
Length = 101
Score = 22.3 bits (46), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 8 LTVIPIPNEKNTICLGRHLASILRLGDCLTLS 39
L V+ IP EKN I + L+ I + + + LS
Sbjct: 13 LKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLS 44
>gi|254780491|ref|YP_003064904.1| Mrp protein [Candidatus Liberibacter asiaticus str. psy62]
Length = 101
Score = 22.3 bits (46), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 8 LTVIPIPNEKNTICLGRHLASILRLGDCLTLS 39
L V+ IP EKN I + L+ I + + + LS
Sbjct: 13 LKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLS 44
>gi|254780271|ref|YP_003064684.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus
Liberibacter asiaticus str. psy62]
Length = 424
Score = 22.3 bits (46), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 38 LSGDLGSGKSFLARSIIRFL 57
L G G GK++LA+++ R +
Sbjct: 118 LVGPTGCGKTYLAQTLARII 137
>gi|254781094|ref|YP_003065507.1| glycyl-tRNA synthetase subunit beta [Candidatus Liberibacter
asiaticus str. psy62]
Length = 702
Score = 22.3 bits (46), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 86 DFYRLSSHQEVVELGFDEILNERICIIEWPEIGRSLLPKKYI 127
D +RL+S + + ++L E I ++EW ++ KKY+
Sbjct: 231 DAHRLASAVGLELVEDKDLLEEIIGLVEWVQVFMGSFDKKYL 272
>gi|255764501|ref|YP_003064973.2| thiamine transporter membrane protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 535
Score = 21.9 bits (45), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 93 HQEVVELGFDEILNERICIIEWPEIGRSLLP 123
Q ++LG + R +EWP + R +LP
Sbjct: 170 RQLALQLGMNPWYFFRF--VEWPYLRRQILP 198
>gi|254780498|ref|YP_003064911.1| putative glycerol-3-phosphate acyltransferase PlsX [Candidatus
Liberibacter asiaticus str. psy62]
Length = 364
Score = 21.9 bits (45), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 42 LGSGKSFLARSIIRFLMHDDA 62
LG+ K A IRFLM+ DA
Sbjct: 31 LGASKFLEAHPRIRFLMYGDA 51
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.323 0.138 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106,036
Number of Sequences: 1233
Number of extensions: 4146
Number of successful extensions: 25
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 19
length of query: 162
length of database: 328,796
effective HSP length: 67
effective length of query: 95
effective length of database: 246,185
effective search space: 23387575
effective search space used: 23387575
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 35 (18.1 bits)