Query gi|254780826|ref|YP_003065239.1| phosphoenolpyruvate carboxykinase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 509
No_of_seqs 210 out of 968
Neff 5.3
Searched_HMMs 39220
Date Sun May 29 17:47:18 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780826.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00311 phosphoenolpyruvate c 100.0 0 0 1676.8 45.1 506 1-509 21-532 (543)
2 TIGR00224 pckA phosphoenolpyru 100.0 0 0 1666.4 32.3 507 1-508 10-536 (549)
3 cd00484 PEPCK_ATP Phosphoenolp 100.0 0 0 1629.6 47.0 498 10-509 1-500 (508)
4 PRK09344 phosphoenolpyruvate c 100.0 0 0 1629.2 46.2 507 1-509 6-514 (525)
5 COG1866 PckA Phosphoenolpyruva 100.0 0 0 1538.3 38.4 507 1-509 10-517 (529)
6 pfam01293 PEPCK_ATP Phosphoeno 100.0 0 0 1464.1 40.9 449 9-459 1-451 (451)
7 cd01919 PEPCK Phosphoenolpyruv 100.0 0 0 1363.9 43.3 492 11-505 2-503 (515)
8 pfam00821 PEPCK Phosphoenolpyr 99.6 3E-11 7.5E-16 94.6 26.5 474 6-499 9-562 (586)
9 cd00819 PEPCK_GTP Phosphoenolp 99.6 9.6E-11 2.4E-15 91.2 27.7 482 5-501 10-563 (579)
10 PRK04210 phosphoenolpyruvate c 99.4 2E-10 5.1E-15 89.1 20.6 473 6-498 32-586 (610)
11 COG1274 PckA Phosphoenolpyruva 99.0 4.3E-07 1.1E-11 67.0 20.1 386 19-418 47-502 (608)
12 cd00820 PEPCK_HprK Phosphoenol 98.6 4.1E-09 1.1E-13 80.3 -0.6 62 203-265 1-70 (107)
13 KOG3749 consensus 97.8 0.00061 1.5E-08 46.1 11.0 334 71-418 132-534 (640)
14 COG1127 Ttg2A ABC-type transpo 95.5 0.005 1.3E-07 40.1 0.9 179 206-418 22-204 (263)
15 TIGR01193 bacteriocin_ABC ABC- 95.1 0.0098 2.5E-07 38.1 1.6 69 215-296 498-575 (710)
16 TIGR02142 modC_ABC molybdate A 94.8 0.011 2.7E-07 37.9 1.0 71 202-293 9-86 (361)
17 COG1052 LdhA Lactate dehydroge 94.7 0.13 3.4E-06 30.6 6.5 101 391-505 208-311 (324)
18 PRK06436 glycerate dehydrogena 94.5 0.4 1E-05 27.5 8.4 101 391-507 181-281 (303)
19 COG4148 ModC ABC-type molybdat 94.4 0.041 1E-06 34.0 3.2 26 210-235 16-41 (352)
20 TIGR01186 proV glycine betaine 94.4 0.016 4E-07 36.7 1.1 21 216-237 18-38 (372)
21 TIGR02868 CydC ABC transporter 94.0 0.024 6.2E-07 35.5 1.4 96 216-327 386-495 (566)
22 PRK06487 glycerate dehydrogena 93.8 0.46 1.2E-05 27.0 7.7 99 391-506 205-308 (317)
23 TIGR02982 heterocyst_DevA ABC 93.5 0.029 7.5E-07 35.0 1.2 21 216-236 29-49 (220)
24 cd02021 GntK Gluconate kinase 93.5 0.026 6.7E-07 35.3 0.8 29 221-249 2-35 (150)
25 PRK05541 adenylylsulfate kinas 93.3 0.035 8.8E-07 34.5 1.2 24 216-239 5-28 (176)
26 PRK06932 glycerate dehydrogena 92.9 0.46 1.2E-05 27.0 6.5 98 391-505 205-309 (314)
27 PRK08410 2-hydroxyacid dehydro 92.9 0.44 1.1E-05 27.1 6.4 97 391-505 204-306 (311)
28 COG4175 ProV ABC-type proline/ 92.7 0.067 1.7E-06 32.6 2.0 42 198-240 34-76 (386)
29 PRK03846 adenylylsulfate kinas 92.2 0.061 1.6E-06 32.8 1.3 23 214-237 21-43 (198)
30 COG2255 RuvB Holliday junction 92.2 0.04 1E-06 34.1 0.3 28 209-236 43-70 (332)
31 pfam05496 RuvB_N Holliday junc 92.2 0.051 1.3E-06 33.3 0.8 18 219-236 51-68 (234)
32 PRK11174 cysteine/glutathione 91.7 0.026 6.5E-07 35.3 -1.2 25 210-236 370-394 (588)
33 PRK08605 D-lactate dehydrogena 91.5 0.85 2.2E-05 25.3 6.4 100 391-503 208-323 (332)
34 PRK05506 bifunctional sulfate 91.4 0.22 5.6E-06 29.2 3.4 22 396-417 457-478 (613)
35 PRK10789 putative multidrug tr 91.0 0.033 8.3E-07 34.6 -1.2 73 218-306 341-421 (569)
36 TIGR02640 gas_vesic_GvpN gas v 90.9 0.061 1.6E-06 32.8 0.1 73 218-308 21-101 (265)
37 COG1493 HprK Serine kinase of 90.8 0.23 6E-06 29.0 3.0 69 191-262 119-192 (308)
38 PRK06217 hypothetical protein; 90.3 0.12 3.1E-06 30.8 1.2 35 221-255 4-42 (185)
39 PRK13657 cyclic beta-1,2-gluca 90.3 0.043 1.1E-06 33.8 -1.1 72 218-305 361-440 (585)
40 PRK00889 adenylylsulfate kinas 90.2 0.12 3.1E-06 30.9 1.1 22 218-239 4-25 (175)
41 TIGR02315 ABC_phnC phosphonate 90.0 0.13 3.4E-06 30.6 1.2 158 217-407 27-227 (253)
42 pfam01583 APS_kinase Adenylyls 89.9 0.13 3.2E-06 30.8 1.0 20 218-237 2-21 (157)
43 PRK13341 recombination factor 89.9 0.11 2.9E-06 31.1 0.8 12 222-233 56-67 (726)
44 COG1126 GlnQ ABC-type polar am 89.8 0.14 3.5E-06 30.5 1.2 24 216-239 26-49 (240)
45 TIGR02324 CP_lyasePhnL phospho 89.8 0.16 4.2E-06 30.0 1.5 39 197-236 11-52 (224)
46 TIGR03415 ABC_choXWV_ATP choli 89.6 0.13 3.2E-06 30.7 0.9 27 208-236 42-68 (382)
47 cd01918 HprK_C HprK/P, the bif 89.5 0.19 4.9E-06 29.5 1.7 47 205-253 3-52 (149)
48 cd02027 APSK Adenosine 5'-phos 89.3 0.12 3E-06 31.0 0.5 17 221-237 2-18 (149)
49 PRK12480 D-lactate dehydrogena 89.2 1.5 3.9E-05 23.6 6.2 101 391-505 206-319 (330)
50 TIGR00455 apsK adenylylsulfate 89.2 0.041 1E-06 34.0 -1.9 47 438-496 139-185 (187)
51 PRK13342 recombination factor 89.1 0.14 3.6E-06 30.4 0.8 16 220-235 39-54 (417)
52 cd03229 ABC_Class3 This class 89.0 0.17 4.3E-06 29.9 1.1 46 369-417 110-158 (178)
53 PRK06305 DNA polymerase III su 89.0 0.14 3.7E-06 30.4 0.8 203 220-451 41-266 (462)
54 TIGR00929 VirB4_CagE type IV s 88.9 0.14 3.7E-06 30.4 0.7 17 220-236 518-534 (931)
55 cd03292 ABC_FtsE_transporter F 88.8 0.18 4.5E-06 29.8 1.1 44 371-418 148-193 (214)
56 PRK11144 modC molybdate transp 88.8 0.18 4.6E-06 29.7 1.1 34 201-236 9-42 (352)
57 PRK08118 topology modulation p 88.5 0.21 5.3E-06 29.4 1.3 35 221-255 4-42 (167)
58 TIGR00968 3a0106s01 sulfate AB 88.4 0.2 5.1E-06 29.4 1.2 172 217-451 25-216 (241)
59 TIGR00972 3a0107s01c2 phosphat 88.4 0.21 5.5E-06 29.2 1.3 69 218-294 27-105 (248)
60 cd03253 ABCC_ATM1_transporter 88.3 0.097 2.5E-06 31.5 -0.5 19 218-236 27-45 (236)
61 TIGR03608 L_ocin_972_ABC putat 88.1 0.21 5.4E-06 29.3 1.2 57 349-418 133-191 (206)
62 PRK10070 glycine betaine trans 88.1 0.21 5.3E-06 29.3 1.1 51 184-236 14-72 (400)
63 cd03301 ABC_MalK_N The N-termi 88.0 0.21 5.5E-06 29.2 1.1 45 371-418 142-189 (213)
64 COG1341 Predicted GTPase or GT 88.0 1.4 3.4E-05 23.9 5.2 19 218-236 73-91 (398)
65 PRK11160 cysteine/glutathione 87.9 0.12 2.9E-06 31.0 -0.3 19 218-236 367-385 (575)
66 PRK11545 gntK gluconate kinase 87.7 0.3 7.6E-06 28.3 1.7 32 218-249 8-44 (177)
67 TIGR00959 ffh signal recogniti 87.7 0.18 4.6E-06 29.7 0.6 18 219-236 103-120 (439)
68 cd03262 ABC_HisP_GlnQ_permease 87.7 0.21 5.3E-06 29.3 0.9 44 371-418 147-192 (213)
69 PRK09112 DNA polymerase III su 87.6 0.033 8.5E-07 34.6 -3.2 139 219-358 46-207 (352)
70 cd03298 ABC_ThiQ_thiamine_tran 87.5 0.24 6E-06 29.0 1.1 42 373-417 142-186 (211)
71 PRK13243 glyoxylate reductase; 87.5 1.9 4.9E-05 22.9 5.8 96 391-505 212-311 (333)
72 PRK09302 circadian clock prote 87.5 0.23 6E-06 29.0 1.1 22 216-237 264-285 (501)
73 TIGR01846 type_I_sec_HlyB type 87.4 0.42 1.1E-05 27.3 2.3 38 212-249 485-530 (703)
74 PRK12289 ribosome-associated G 87.3 0.81 2.1E-05 25.4 3.8 34 203-236 148-189 (351)
75 PRK09825 idnK D-gluconate kina 87.3 0.3 7.6E-06 28.3 1.5 30 219-248 4-38 (176)
76 TIGR02397 dnaX_nterm DNA polym 87.3 0.17 4.4E-06 29.9 0.3 125 220-360 38-184 (363)
77 COG3842 PotA ABC-type spermidi 87.2 0.26 6.6E-06 28.7 1.1 18 218-235 31-48 (352)
78 cd03236 ABC_RNaseL_inhibitor_d 87.0 0.46 1.2E-05 27.1 2.3 31 204-236 14-44 (255)
79 cd03294 ABC_Pro_Gly_Bertaine T 86.7 0.28 7E-06 28.5 1.0 44 371-417 172-218 (269)
80 PRK04328 hypothetical protein; 86.6 0.21 5.4E-06 29.3 0.4 53 218-286 24-76 (250)
81 cd03300 ABC_PotA_N PotA is an 86.6 0.29 7.4E-06 28.3 1.1 45 371-418 142-189 (232)
82 PRK12288 ribosome-associated G 86.6 0.47 1.2E-05 27.0 2.2 35 202-236 183-225 (344)
83 COG1136 SalX ABC-type antimicr 86.5 0.28 7E-06 28.5 1.0 21 217-237 30-50 (226)
84 cd03260 ABC_PstB_phosphate_tra 86.5 0.3 7.6E-06 28.3 1.2 20 217-236 25-44 (227)
85 PRK00080 ruvB Holliday junctio 86.5 0.21 5.3E-06 29.3 0.3 27 210-236 43-69 (328)
86 cd03299 ABC_ModC_like Archeal 86.4 0.29 7.4E-06 28.3 1.1 45 371-418 141-188 (235)
87 TIGR01277 thiQ thiamine ABC tr 86.4 0.32 8.1E-06 28.1 1.2 33 201-235 9-41 (213)
88 PRK07261 topology modulation p 86.4 0.35 8.8E-06 27.9 1.4 35 221-255 3-41 (171)
89 cd00009 AAA The AAA+ (ATPases 86.3 0.26 6.8E-06 28.6 0.8 21 219-239 20-40 (151)
90 cd03251 ABCC_MsbA MsbA is an e 86.3 0.15 3.8E-06 30.3 -0.5 19 218-236 28-46 (234)
91 TIGR02211 LolD_lipo_ex lipopro 86.0 0.32 8E-06 28.1 1.1 20 217-236 30-49 (221)
92 TIGR03265 PhnT2 putative 2-ami 85.8 0.33 8.4E-06 28.0 1.1 19 216-235 29-47 (353)
93 cd03254 ABCC_Glucan_exporter_l 85.7 0.14 3.5E-06 30.6 -0.9 71 217-293 28-99 (229)
94 TIGR03375 type_I_sec_LssB type 85.5 0.31 7.8E-06 28.2 0.8 63 218-293 491-561 (694)
95 cd03252 ABCC_Hemolysin The ABC 85.5 0.19 4.9E-06 29.6 -0.3 71 218-294 28-99 (237)
96 cd03228 ABCC_MRP_Like The MRP 85.4 0.18 4.6E-06 29.7 -0.4 21 217-237 27-47 (171)
97 cd03297 ABC_ModC_molybdenum_tr 85.4 0.32 8.3E-06 28.0 0.9 46 369-417 141-189 (214)
98 cd03261 ABC_Org_Solvent_Resist 85.3 0.47 1.2E-05 27.0 1.7 46 369-418 146-194 (235)
99 COG0645 Predicted kinase [Gene 85.3 0.3 7.8E-06 28.2 0.7 21 220-240 3-23 (170)
100 TIGR01187 potA polyamine ABC t 85.3 0.17 4.4E-06 29.9 -0.6 13 223-235 1-13 (331)
101 PRK05537 bifunctional sulfate 85.3 0.32 8.1E-06 28.1 0.8 21 219-239 393-413 (568)
102 PRK11629 lolD lipoprotein tran 85.2 0.38 9.6E-06 27.6 1.1 40 374-416 160-202 (233)
103 cd03257 ABC_NikE_OppD_transpor 85.2 0.37 9.4E-06 27.7 1.1 21 217-237 30-50 (228)
104 TIGR00630 uvra excinuclease AB 85.1 0.35 8.9E-06 27.8 0.9 32 119-150 263-294 (956)
105 COG0529 CysC Adenylylsulfate k 85.1 0.43 1.1E-05 27.2 1.4 23 218-240 23-45 (197)
106 pfam00004 AAA ATPase family as 85.1 0.28 7.2E-06 28.4 0.4 16 221-236 1-16 (131)
107 cd03256 ABC_PhnC_transporter A 85.0 0.38 9.8E-06 27.6 1.1 41 374-417 159-202 (241)
108 TIGR01842 type_I_sec_PrtD type 84.9 0.41 1E-05 27.4 1.2 165 218-449 356-544 (556)
109 cd03293 ABC_NrtD_SsuB_transpor 84.8 0.39 1E-05 27.5 1.1 57 349-418 130-189 (220)
110 TIGR03258 PhnT 2-aminoethylpho 84.6 0.41 1E-05 27.4 1.1 20 216-236 30-49 (362)
111 cd03296 ABC_CysA_sulfate_impor 84.6 0.41 1E-05 27.4 1.1 45 371-418 148-195 (239)
112 COG3839 MalK ABC-type sugar tr 84.5 0.39 9.8E-06 27.5 0.9 33 217-249 28-68 (338)
113 pfam03193 DUF258 Protein of un 84.5 0.58 1.5E-05 26.4 1.9 35 202-236 11-53 (161)
114 TIGR01969 minD_arch cell divis 84.5 0.39 1E-05 27.5 1.0 208 225-496 8-233 (258)
115 COG0563 Adk Adenylate kinase a 84.4 0.34 8.6E-06 27.9 0.6 17 221-237 3-19 (178)
116 COG3840 ThiQ ABC-type thiamine 84.4 0.54 1.4E-05 26.6 1.6 46 202-249 11-64 (231)
117 smart00382 AAA ATPases associa 84.3 0.41 1E-05 27.4 1.0 19 219-237 3-21 (148)
118 cd03295 ABC_OpuCA_Osmoprotecti 84.2 0.43 1.1E-05 27.2 1.1 58 349-419 134-194 (242)
119 COG2240 PdxK Pyridoxal/pyridox 84.2 3.2 8.1E-05 21.5 5.5 14 432-445 236-249 (281)
120 TIGR00955 3a01204 Pigment prec 84.1 0.45 1.2E-05 27.1 1.1 35 199-236 42-76 (671)
121 COG3598 RepA RecA-family ATPas 84.1 0.42 1.1E-05 27.3 1.0 20 218-237 89-108 (402)
122 pfam09439 SRPRB Signal recogni 84.1 0.4 1E-05 27.5 0.9 19 219-237 4-22 (181)
123 PRK11176 lipid transporter ATP 83.9 0.19 4.9E-06 29.6 -0.8 20 217-236 367-386 (581)
124 KOG4513 consensus 83.8 1.9 4.8E-05 23.0 4.2 82 136-225 245-358 (531)
125 PRK11264 putative amino-acid A 83.8 0.48 1.2E-05 26.9 1.2 20 217-236 26-45 (248)
126 COG1125 OpuBA ABC-type proline 83.7 0.53 1.4E-05 26.6 1.4 24 217-240 26-49 (309)
127 TIGR02203 MsbA_lipidA lipid A 83.3 0.56 1.4E-05 26.5 1.3 20 216-236 387-406 (603)
128 cd03226 ABC_cobalt_CbiO_domain 83.2 0.52 1.3E-05 26.7 1.2 26 209-236 19-44 (205)
129 PRK11831 putative ABC transpor 83.2 0.52 1.3E-05 26.7 1.2 71 374-448 159-252 (269)
130 cd03222 ABC_RNaseL_inhibitor T 83.1 0.53 1.4E-05 26.6 1.2 21 215-236 23-43 (177)
131 KOG0058 consensus 83.1 0.15 3.9E-06 30.2 -1.6 64 218-294 494-565 (716)
132 cd04105 SR_beta Signal recogni 83.0 0.47 1.2E-05 26.9 0.9 18 220-237 2-19 (203)
133 cd03238 ABC_UvrA The excision 83.0 0.55 1.4E-05 26.6 1.2 19 216-235 20-38 (176)
134 TIGR00635 ruvB Holliday juncti 82.9 0.34 8.7E-06 27.9 0.1 27 210-236 22-48 (305)
135 cd03240 ABC_Rad50 The catalyti 82.8 0.62 1.6E-05 26.2 1.4 33 202-235 7-39 (204)
136 PRK06090 DNA polymerase III su 82.8 0.11 2.9E-06 31.1 -2.4 168 219-406 26-218 (319)
137 cd03258 ABC_MetN_methionine_tr 82.7 0.52 1.3E-05 26.7 1.0 43 372-418 153-198 (233)
138 cd03233 ABC_PDR_domain1 The pl 82.7 0.58 1.5E-05 26.4 1.2 19 218-236 33-51 (202)
139 PRK10790 putative multidrug tr 82.6 0.22 5.6E-06 29.2 -1.0 69 210-293 361-437 (593)
140 PRK10584 putative ABC transpor 82.5 0.55 1.4E-05 26.5 1.1 56 349-416 145-203 (228)
141 TIGR00176 mobB molybdopterin-g 82.4 0.49 1.3E-05 26.9 0.8 17 221-237 2-18 (165)
142 cd03250 ABCC_MRP_domain1 Domai 82.3 0.6 1.5E-05 26.3 1.2 65 210-294 25-89 (204)
143 PRK04195 replication factor C 82.2 0.64 1.6E-05 26.1 1.3 18 219-236 41-58 (403)
144 PRK00440 rfc replication facto 82.2 0.44 1.1E-05 27.2 0.4 27 220-246 39-65 (318)
145 cd01854 YjeQ_engC YjeQ/EngC. 82.1 1 2.6E-05 24.8 2.3 35 202-236 137-179 (287)
146 cd03234 ABCG_White The White s 82.0 0.58 1.5E-05 26.4 1.0 20 216-236 32-51 (226)
147 PRK10751 molybdopterin-guanine 82.0 0.58 1.5E-05 26.4 1.0 18 220-237 4-21 (170)
148 PRK10851 sulfate/thiosulfate t 81.9 0.6 1.5E-05 26.3 1.1 20 216-236 27-46 (352)
149 PRK11650 ugpC glycerol-3-phosp 81.9 0.6 1.5E-05 26.3 1.1 19 218-236 30-48 (358)
150 PRK11432 fbpC ferric transport 81.9 0.59 1.5E-05 26.3 1.0 18 218-235 32-49 (351)
151 PRK11124 artP arginine transpo 81.8 0.63 1.6E-05 26.1 1.2 42 372-416 154-197 (242)
152 TIGR02237 recomb_radB DNA repa 81.8 0.32 8.2E-06 28.1 -0.3 104 216-345 10-115 (223)
153 cd03225 ABC_cobalt_CbiO_domain 81.8 0.64 1.6E-05 26.1 1.1 27 209-237 20-46 (211)
154 CHL00095 clpC Clp protease ATP 81.8 0.47 1.2E-05 27.0 0.5 75 379-454 701-799 (823)
155 PRK09183 transposase/IS protei 81.6 0.46 1.2E-05 27.1 0.4 21 216-237 100-120 (258)
156 PRK10771 thiQ thiamine transpo 81.6 0.65 1.6E-05 26.1 1.1 41 375-418 145-188 (233)
157 COG1118 CysA ABC-type sulfate/ 81.5 0.72 1.8E-05 25.8 1.3 53 349-413 136-191 (345)
158 pfam00154 RecA recA bacterial 81.5 0.54 1.4E-05 26.6 0.7 20 218-237 52-71 (322)
159 cd03237 ABC_RNaseL_inhibitor_d 81.5 0.64 1.6E-05 26.1 1.1 21 215-236 23-43 (246)
160 PRK13853 type IV secretion sys 81.4 0.73 1.9E-05 25.7 1.4 16 220-235 428-443 (789)
161 cd04157 Arl6 Arl6 subfamily. 81.2 0.52 1.3E-05 26.7 0.5 16 221-236 2-17 (162)
162 PRK11248 tauB taurine transpor 81.2 0.66 1.7E-05 26.0 1.1 56 349-416 127-185 (255)
163 cd03255 ABC_MJ0796_Lo1CDE_FtsE 80.9 0.69 1.7E-05 25.9 1.1 21 215-236 28-48 (218)
164 PRK11607 potG putrescine trans 80.9 0.68 1.7E-05 25.9 1.0 24 210-235 39-62 (377)
165 PRK00098 ribosome-associated G 80.9 0.69 1.8E-05 25.9 1.1 34 203-236 141-182 (298)
166 COG2256 MGS1 ATPase related to 80.8 0.6 1.5E-05 26.3 0.7 16 220-235 50-65 (436)
167 PRK03695 vitamin B12-transport 80.7 0.72 1.8E-05 25.8 1.1 20 218-237 23-42 (245)
168 PRK10619 histidine/lysine/argi 80.5 0.74 1.9E-05 25.7 1.1 56 350-418 152-209 (257)
169 PRK09984 phosphonate/organopho 80.5 0.65 1.7E-05 26.0 0.9 20 217-236 29-48 (262)
170 PRK10908 cell division protein 80.5 0.71 1.8E-05 25.8 1.0 19 218-236 28-46 (222)
171 cd03278 ABC_SMC_barmotin Barmo 80.5 0.71 1.8E-05 25.8 1.0 16 220-235 24-39 (197)
172 PRK09493 glnQ glutamine ABC tr 80.5 0.75 1.9E-05 25.7 1.1 56 349-416 135-192 (240)
173 PRK13648 cbiO cobalt transport 80.4 0.76 1.9E-05 25.6 1.2 26 210-237 29-54 (269)
174 PRK11701 phnK phosphonates tra 80.4 0.77 2E-05 25.6 1.2 40 374-416 166-208 (258)
175 PRK10247 putative ABC transpor 80.2 0.78 2E-05 25.5 1.2 19 218-236 33-51 (225)
176 PRK09361 radB DNA repair and r 80.2 0.9 2.3E-05 25.1 1.5 20 218-237 23-42 (224)
177 PRK13538 cytochrome c biogenes 80.2 0.78 2E-05 25.5 1.2 20 216-236 26-45 (204)
178 TIGR01313 therm_gnt_kin carboh 80.2 0.47 1.2E-05 27.0 0.0 16 222-237 2-17 (175)
179 PRK13637 cbiO cobalt transport 80.2 0.73 1.8E-05 25.7 1.0 56 349-416 143-201 (287)
180 PRK06526 transposase; Provisio 80.2 0.55 1.4E-05 26.5 0.4 22 216-238 97-118 (254)
181 COG4525 TauB ABC-type taurine 80.1 0.82 2.1E-05 25.4 1.3 25 212-236 25-49 (259)
182 COG1223 Predicted ATPase (AAA+ 80.1 0.72 1.8E-05 25.8 1.0 40 186-235 128-168 (368)
183 PRK13543 cytochrome c biogenes 80.0 0.78 2E-05 25.5 1.1 19 218-236 37-55 (214)
184 cd03369 ABCC_NFT1 Domain 2 of 80.0 0.8 2E-05 25.4 1.2 20 218-237 34-53 (207)
185 COG0194 Gmk Guanylate kinase [ 79.9 0.8 2E-05 25.4 1.2 19 218-236 4-22 (191)
186 PRK13830 conjugal transfer pro 79.9 1 2.6E-05 24.7 1.7 17 220-236 458-474 (818)
187 cd03270 ABC_UvrA_I The excisio 79.9 0.82 2.1E-05 25.4 1.2 18 218-235 21-38 (226)
188 COG1124 DppF ABC-type dipeptid 79.9 0.79 2E-05 25.5 1.1 99 339-445 125-247 (252)
189 PRK10419 nikE nickel transport 79.8 0.78 2E-05 25.5 1.1 41 373-416 165-208 (266)
190 cd03289 ABCC_CFTR2 The CFTR su 79.8 0.82 2.1E-05 25.4 1.2 26 209-236 23-48 (275)
191 PRK13632 cbiO cobalt transport 79.8 0.78 2E-05 25.5 1.1 23 216-239 35-57 (273)
192 PRK13539 cytochrome c biogenes 79.8 0.82 2.1E-05 25.4 1.2 19 218-236 28-46 (206)
193 PRK11000 maltose/maltodextrin 79.7 0.79 2E-05 25.5 1.1 17 219-235 30-46 (369)
194 PRK10522 multidrug transporter 79.7 0.84 2.1E-05 25.3 1.2 19 218-236 349-367 (547)
195 PRK10575 iron-hydroxamate tran 79.7 0.82 2.1E-05 25.4 1.1 19 218-236 37-55 (265)
196 PRK07952 DNA replication prote 79.7 0.53 1.4E-05 26.6 0.2 25 219-243 97-121 (242)
197 PRK08181 transposase; Validate 79.5 0.61 1.6E-05 26.2 0.4 19 219-237 107-125 (269)
198 COG1117 PstB ABC-type phosphat 79.4 0.96 2.4E-05 24.9 1.4 23 218-240 33-55 (253)
199 COG0464 SpoVK ATPases of the A 79.4 1.3 3.4E-05 24.0 2.1 66 166-239 232-297 (494)
200 PRK13633 cobalt transporter AT 79.2 0.85 2.2E-05 25.3 1.1 40 374-416 160-202 (281)
201 cd03271 ABC_UvrA_II The excisi 79.2 0.89 2.3E-05 25.2 1.2 19 216-235 20-38 (261)
202 PRK06762 hypothetical protein; 79.2 0.66 1.7E-05 26.0 0.5 28 220-247 4-37 (166)
203 cd03235 ABC_Metallic_Cations A 79.1 0.88 2.2E-05 25.2 1.2 19 218-236 25-43 (213)
204 cd03291 ABCC_CFTR1 The CFTR su 79.1 0.86 2.2E-05 25.2 1.1 59 218-294 63-121 (282)
205 PRK12402 replication factor C 79.1 0.63 1.6E-05 26.1 0.4 25 221-245 39-63 (337)
206 cd03224 ABC_TM1139_LivF_branch 79.1 0.89 2.3E-05 25.1 1.2 20 217-236 25-44 (222)
207 PRK11247 ssuB aliphatic sulfon 79.1 0.85 2.2E-05 25.3 1.1 19 218-236 38-56 (257)
208 PRK10744 phosphate transporter 79.1 0.89 2.3E-05 25.1 1.2 19 217-235 35-53 (257)
209 PRK13546 teichoic acids export 79.1 1.8 4.5E-05 23.2 2.7 116 346-509 139-256 (264)
210 cd03246 ABCC_Protease_Secretio 79.1 0.87 2.2E-05 25.2 1.1 20 218-237 28-47 (173)
211 COG0178 UvrA Excinuclease ATPa 79.0 0.93 2.4E-05 25.0 1.2 14 388-401 509-522 (935)
212 cd03245 ABCC_bacteriocin_expor 79.0 0.88 2.2E-05 25.2 1.1 21 217-237 29-49 (220)
213 PRK13634 cbiO cobalt transport 78.9 0.85 2.2E-05 25.3 1.0 55 350-416 132-189 (276)
214 PRK13646 cbiO cobalt transport 78.8 0.9 2.3E-05 25.1 1.1 21 216-237 32-52 (286)
215 cd03223 ABCD_peroxisomal_ALDP 78.8 0.95 2.4E-05 25.0 1.2 26 209-236 20-45 (166)
216 PRK13544 consensus 78.8 0.91 2.3E-05 25.1 1.1 20 217-236 26-45 (208)
217 cd00983 recA RecA is a bacter 78.8 0.75 1.9E-05 25.6 0.7 35 218-252 55-97 (325)
218 cd03232 ABC_PDR_domain2 The pl 78.7 0.93 2.4E-05 25.0 1.2 19 217-235 32-50 (192)
219 PRK09580 sufC cysteine desulfu 78.7 0.93 2.4E-05 25.0 1.2 20 217-236 26-45 (248)
220 cd04149 Arf6 Arf6 subfamily. 78.7 1 2.6E-05 24.8 1.4 23 214-236 5-27 (168)
221 CHL00131 ycf16 sulfate ABC tra 78.6 0.87 2.2E-05 25.2 1.0 20 217-236 31-50 (252)
222 cd04153 Arl5_Arl8 Arl5/Arl8 su 78.6 0.7 1.8E-05 25.8 0.5 21 217-237 14-34 (174)
223 PRK13650 cbiO cobalt transport 78.6 0.91 2.3E-05 25.1 1.1 57 349-417 136-195 (276)
224 cd03249 ABC_MTABC3_MDL1_MDL2 M 78.5 0.95 2.4E-05 25.0 1.2 19 218-236 29-47 (238)
225 PRK03992 proteasome-activating 78.4 0.8 2E-05 25.5 0.8 18 219-236 167-184 (390)
226 PRK10895 putative ABC transpor 78.4 0.94 2.4E-05 25.0 1.1 20 216-236 28-47 (241)
227 cd03213 ABCG_EPDR ABCG transpo 78.4 0.93 2.4E-05 25.0 1.1 18 218-235 35-52 (194)
228 PRK07994 DNA polymerase III su 78.3 1.1 2.7E-05 24.6 1.4 21 219-239 324-344 (643)
229 PRK13547 hmuV hemin importer A 78.2 0.95 2.4E-05 25.0 1.1 67 348-417 143-213 (273)
230 cd03231 ABC_CcmA_heme_exporter 78.2 0.99 2.5E-05 24.8 1.2 19 218-236 26-44 (201)
231 PRK09452 potA putrescine/sperm 78.2 0.96 2.4E-05 24.9 1.1 18 218-235 43-60 (378)
232 cd02023 UMPK Uridine monophosp 78.2 0.73 1.9E-05 25.7 0.5 17 221-237 2-18 (198)
233 KOG3308 consensus 78.1 0.92 2.4E-05 25.0 1.0 39 221-259 4-50 (225)
234 cd03221 ABCF_EF-3 ABCF_EF-3 E 78.1 1 2.5E-05 24.8 1.2 18 218-235 26-43 (144)
235 PRK09544 znuC high-affinity zi 77.9 1 2.6E-05 24.7 1.2 20 217-236 29-48 (251)
236 cd03214 ABC_Iron-Siderophores_ 77.8 1 2.6E-05 24.7 1.2 57 349-417 96-155 (180)
237 cd00267 ABC_ATPase ABC (ATP-bi 77.8 1 2.7E-05 24.7 1.2 20 218-237 25-44 (157)
238 cd04161 Arl2l1_Arl13_like Arl2 77.8 0.86 2.2E-05 25.2 0.8 17 220-236 1-17 (167)
239 cd01124 KaiC KaiC is a circadi 77.7 0.79 2E-05 25.5 0.6 51 220-286 1-51 (187)
240 PRK13540 cytochrome c biogenes 77.7 1 2.7E-05 24.7 1.2 19 218-236 27-45 (200)
241 cd03215 ABC_Carb_Monos_II This 77.6 1.3 3.3E-05 24.1 1.6 20 218-237 26-45 (182)
242 PRK07471 DNA polymerase III su 77.6 0.4 1E-05 27.4 -1.0 135 219-361 40-208 (363)
243 PRK12377 putative replication 77.5 0.88 2.2E-05 25.2 0.8 25 217-241 100-124 (248)
244 TIGR01978 sufC FeS assembly AT 77.5 1.3 3.2E-05 24.1 1.6 30 394-423 115-151 (248)
245 pfam01695 IstB IstB-like ATP b 77.4 0.82 2.1E-05 25.4 0.6 26 216-242 46-71 (178)
246 cd01120 RecA-like_NTPases RecA 77.3 0.86 2.2E-05 25.3 0.7 26 396-421 113-138 (165)
247 PRK06547 hypothetical protein; 77.3 1.1 2.7E-05 24.6 1.1 33 219-251 16-55 (184)
248 TIGR01425 SRP54_euk signal rec 77.3 1.4 3.5E-05 23.9 1.7 51 186-236 77-139 (453)
249 cd03290 ABCC_SUR1_N The SUR do 77.2 1.1 2.7E-05 24.6 1.1 20 217-236 26-45 (218)
250 PRK13647 cbiO cobalt transport 77.1 1.1 2.7E-05 24.6 1.1 21 216-237 30-50 (273)
251 COG0470 HolB ATPase involved i 76.9 0.94 2.4E-05 25.0 0.8 28 220-247 26-53 (325)
252 cd03217 ABC_FeS_Assembly ABC-t 76.9 1.1 2.9E-05 24.4 1.2 20 217-236 25-44 (200)
253 COG1763 MobB Molybdopterin-gua 76.8 1.2 3.1E-05 24.2 1.3 18 220-237 4-21 (161)
254 cd03248 ABCC_TAP TAP, the Tran 76.8 1.1 2.8E-05 24.6 1.1 19 218-236 40-58 (226)
255 PRK13642 cbiO cobalt transport 76.8 1.1 2.8E-05 24.6 1.1 56 349-416 139-197 (277)
256 TIGR01420 pilT_fam twitching m 76.8 1 2.7E-05 24.7 1.0 74 70-152 38-118 (350)
257 PRK13541 cytochrome c biogenes 76.8 1.1 2.9E-05 24.4 1.2 27 208-236 18-44 (195)
258 PRK01889 ribosome-associated G 76.7 1 2.6E-05 24.7 0.9 34 203-237 170-213 (353)
259 PRK04220 2-phosphoglycerate ki 76.7 0.86 2.2E-05 25.3 0.5 19 219-237 93-111 (306)
260 PRK13640 cbiO cobalt transport 76.7 1.1 2.8E-05 24.5 1.1 24 216-240 33-56 (283)
261 PRK13635 cbiO cobalt transport 76.6 1.1 2.9E-05 24.5 1.1 21 216-237 32-52 (279)
262 PRK13873 conjugal transfer ATP 76.6 1.1 2.8E-05 24.5 1.0 17 220-236 443-459 (815)
263 PRK10253 iron-enterobactin tra 76.4 1.1 2.8E-05 24.6 1.0 21 217-237 32-52 (265)
264 PRK11614 livF leucine/isoleuci 76.4 1.2 3E-05 24.3 1.2 41 375-418 153-195 (237)
265 CHL00181 cbbX CbbX; Provisiona 76.4 0.99 2.5E-05 24.8 0.8 47 185-236 29-77 (287)
266 cd03244 ABCC_MRP_domain2 Domai 76.4 1.2 3E-05 24.3 1.2 25 210-236 24-48 (221)
267 PRK11153 metN DL-methionine tr 76.2 1.2 3E-05 24.4 1.1 20 217-236 30-49 (343)
268 TIGR03499 FlhF flagellar biosy 76.2 1.1 2.8E-05 24.5 1.0 46 185-236 167-212 (282)
269 TIGR03185 DNA_S_dndD DNA sulfu 76.1 1.3 3.3E-05 24.1 1.3 20 218-237 28-47 (650)
270 cd04158 ARD1 ARD1 subfamily. 76.1 1 2.6E-05 24.8 0.7 17 221-237 2-18 (169)
271 TIGR02769 nickel_nikE nickel i 76.0 0.96 2.4E-05 24.9 0.6 38 215-260 36-73 (267)
272 PRK05480 uridine kinase; Provi 76.0 1 2.6E-05 24.8 0.7 19 219-237 7-25 (209)
273 COG4778 PhnL ABC-type phosphon 75.8 1.6 4E-05 23.5 1.7 55 196-251 13-70 (235)
274 PRK05564 DNA polymerase III su 75.8 0.48 1.2E-05 26.9 -1.0 118 219-361 27-162 (313)
275 cd04151 Arl1 Arl1 subfamily. 75.8 0.93 2.4E-05 25.0 0.5 16 221-236 2-17 (158)
276 TIGR01166 cbiO cobalt ABC tran 75.7 1.5 3.9E-05 23.6 1.6 41 217-257 17-65 (190)
277 cd04155 Arl3 Arl3 subfamily. 75.6 1.3 3.4E-05 23.9 1.3 19 218-236 14-32 (173)
278 KOG3354 consensus 75.5 1.3 3.3E-05 24.0 1.2 22 214-236 9-30 (191)
279 PRK11231 fecE iron-dicitrate t 75.5 1.3 3.3E-05 24.1 1.1 19 218-236 28-46 (255)
280 PRK13644 cbiO cobalt transport 75.5 1.3 3.2E-05 24.1 1.1 21 216-237 27-47 (274)
281 PRK13651 cobalt transporter AT 75.4 1.3 3.3E-05 24.1 1.2 55 350-416 161-217 (304)
282 COG4988 CydD ABC-type transpor 75.3 0.9 2.3E-05 25.1 0.3 66 217-283 346-412 (559)
283 PRK13631 cbiO cobalt transport 75.3 1.4 3.6E-05 23.8 1.3 56 350-418 176-233 (320)
284 COG0396 sufC Cysteine desulfur 75.3 1.2 3.2E-05 24.2 1.0 21 217-237 29-49 (251)
285 PRK06620 hypothetical protein; 75.2 0.9 2.3E-05 25.1 0.3 17 219-235 45-61 (214)
286 TIGR02204 MsbA_rel ABC transpo 75.1 1.2 3E-05 24.3 0.9 99 195-319 343-459 (576)
287 PRK13548 hmuV hemin importer A 75.1 1.3 3.4E-05 24.0 1.2 20 216-236 27-46 (257)
288 PRK13641 cbiO cobalt transport 75.1 1.2 3.2E-05 24.2 1.0 21 216-237 32-52 (286)
289 cd04160 Arfrp1 Arfrp1 subfamil 75.0 1.1 2.8E-05 24.5 0.7 15 221-235 2-16 (167)
290 TIGR02768 TraA_Ti Ti-type conj 75.0 1.4 3.4E-05 23.9 1.2 20 218-237 430-449 (888)
291 smart00177 ARF ARF-like small 75.0 1.3 3.4E-05 24.0 1.1 23 214-236 9-31 (175)
292 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 74.9 1.3 3.4E-05 24.0 1.1 20 216-236 47-66 (224)
293 PRK10418 nikD nickel transport 74.9 1.3 3.3E-05 24.1 1.1 40 374-416 155-197 (254)
294 TIGR03269 met_CoM_red_A2 methy 74.9 1.6 4E-05 23.5 1.5 20 216-236 309-328 (520)
295 cd03288 ABCC_SUR2 The SUR doma 74.8 1.4 3.5E-05 23.9 1.2 19 218-236 47-65 (257)
296 PRK10078 ribose 1,5-bisphospho 74.7 1.3 3.3E-05 24.1 1.0 19 219-237 3-21 (184)
297 cd04150 Arf1_5_like Arf1-Arf5- 74.6 1 2.7E-05 24.7 0.5 16 221-236 3-18 (159)
298 PRK13639 cbiO cobalt transport 74.6 1.4 3.5E-05 23.9 1.1 21 216-237 27-47 (275)
299 COG0468 RecA RecA/RadA recombi 74.5 2 5E-05 22.9 1.9 36 216-251 58-101 (279)
300 COG3638 ABC-type phosphate/pho 74.5 1.4 3.7E-05 23.8 1.2 24 216-240 29-52 (258)
301 PRK08853 DNA polymerase III su 74.5 3.4 8.7E-05 21.3 3.1 22 218-239 322-343 (717)
302 PRK13645 cbiO cobalt transport 74.4 1.4 3.5E-05 23.9 1.1 57 349-417 149-208 (289)
303 cd03230 ABC_DR_subfamily_A Thi 74.2 1.5 3.8E-05 23.7 1.2 19 218-236 26-44 (173)
304 PRK13643 cbiO cobalt transport 74.2 1.4 3.5E-05 23.9 1.0 27 209-237 25-51 (288)
305 cd03263 ABC_subfamily_A The AB 74.2 1.5 3.7E-05 23.7 1.2 20 216-236 27-46 (220)
306 PRK13649 cbiO cobalt transport 74.1 1.4 3.7E-05 23.8 1.1 27 209-237 26-52 (280)
307 PRK13652 cbiO cobalt transport 74.0 1.4 3.6E-05 23.8 1.1 40 374-416 152-194 (277)
308 PRK05703 flhF flagellar biosyn 73.9 3.5 9E-05 21.2 3.1 45 184-236 184-228 (412)
309 PRK13898 type IV secretion sys 73.8 1.2 3.1E-05 24.3 0.7 17 220-236 448-464 (800)
310 PRK10416 cell division protein 73.8 4.2 0.00011 20.6 3.5 143 211-375 288-457 (499)
311 COG0111 SerA Phosphoglycerate 73.8 7.1 0.00018 19.2 8.0 101 391-508 205-308 (324)
312 cd04162 Arl9_Arfrp2_like Arl9/ 73.8 1.1 2.9E-05 24.5 0.5 16 221-236 2-17 (164)
313 PRK10938 putative molybdenum t 73.8 1.5 3.7E-05 23.7 1.1 24 218-245 286-309 (490)
314 PRK13638 cbiO cobalt transport 73.7 1.3 3.4E-05 24.0 0.9 19 218-236 27-45 (271)
315 cd03266 ABC_NatA_sodium_export 73.6 1.5 3.9E-05 23.6 1.2 19 217-235 30-48 (218)
316 COG1116 TauB ABC-type nitrate/ 73.6 1.4 3.7E-05 23.8 1.0 19 217-235 28-46 (248)
317 cd01394 radB RadB. The archaea 73.6 1.8 4.5E-05 23.2 1.5 20 218-237 19-38 (218)
318 cd03116 MobB Molybdenum is an 73.6 1.5 3.7E-05 23.7 1.0 18 220-237 3-20 (159)
319 cd03247 ABCC_cytochrome_bd The 73.5 1.5 3.8E-05 23.7 1.1 25 210-236 22-46 (178)
320 TIGR02528 EutP ethanolamine ut 73.5 1.5 3.9E-05 23.6 1.1 17 221-237 3-19 (144)
321 cd04156 ARLTS1 ARLTS1 subfamil 73.5 1.3 3.2E-05 24.1 0.7 17 221-237 2-18 (160)
322 TIGR02525 plasmid_TraJ plasmid 73.4 1.2 3.2E-05 24.2 0.6 66 176-243 105-183 (374)
323 PRK06731 flhF flagellar biosyn 73.3 1.8 4.5E-05 23.2 1.4 21 216-236 73-93 (270)
324 PRK06835 DNA replication prote 73.2 1.2 3.1E-05 24.2 0.6 27 212-239 178-204 (330)
325 cd03218 ABC_YhbG The ABC trans 73.2 1.6 4.1E-05 23.4 1.2 19 218-236 26-44 (232)
326 PTZ00133 ADP-ribosylation fact 73.2 1.7 4.2E-05 23.4 1.2 21 216-236 15-35 (182)
327 pfam00025 Arf ADP-ribosylation 73.2 1.7 4.4E-05 23.3 1.3 23 214-236 10-32 (174)
328 cd03216 ABC_Carb_Monos_I This 73.1 1.6 4.1E-05 23.4 1.2 19 218-236 26-44 (163)
329 TIGR02673 FtsE cell division A 73.1 0.91 2.3E-05 25.1 -0.1 19 217-235 27-45 (215)
330 pfam06745 KaiC KaiC. This fami 72.9 1.7 4.4E-05 23.2 1.3 53 218-286 19-72 (231)
331 KOG0055 consensus 72.8 0.79 2E-05 25.5 -0.5 177 216-410 378-593 (1228)
332 COG1162 Predicted GTPases [Gen 72.8 1.5 3.8E-05 23.7 0.9 36 201-236 139-182 (301)
333 PRK13636 cbiO cobalt transport 72.8 1.6 4.2E-05 23.4 1.1 20 218-237 32-51 (285)
334 PRK11300 livG leucine/isoleuci 72.7 1.7 4.3E-05 23.3 1.2 58 347-416 150-210 (255)
335 PRK11308 dppF dipeptide transp 72.6 1.5 3.9E-05 23.6 0.9 67 375-445 170-260 (327)
336 cd04154 Arl2 Arl2 subfamily. 72.5 1.8 4.5E-05 23.2 1.3 21 216-236 12-32 (173)
337 COG3451 VirB4 Type IV secretor 72.5 1.4 3.4E-05 23.9 0.7 17 220-236 438-454 (796)
338 cd00879 Sar1 Sar1 subfamily. 72.4 1.8 4.7E-05 23.1 1.3 22 216-237 17-38 (190)
339 TIGR00956 3a01205 Pleiotropic 72.4 1.4 3.5E-05 23.9 0.6 236 218-498 853-1120(1466)
340 cd04152 Arl4_Arl7 Arl4/Arl7 su 72.2 1.4 3.6E-05 23.8 0.7 18 220-237 5-22 (183)
341 COG2274 SunT ABC-type bacterio 72.2 1.7 4.2E-05 23.3 1.1 20 217-236 498-517 (709)
342 PRK13891 conjugal transfer pro 72.1 1.7 4.3E-05 23.3 1.1 17 220-236 490-506 (852)
343 PRK06995 flhF flagellar biosyn 71.8 2 5E-05 22.9 1.4 52 398-455 327-378 (404)
344 cd02028 UMPK_like Uridine mono 71.8 1.3 3.4E-05 24.0 0.5 17 221-237 2-18 (179)
345 PRK06645 DNA polymerase III su 71.6 0.09 2.3E-06 31.7 -5.5 126 219-360 44-196 (507)
346 cd03267 ABC_NatA_like Similar 71.6 3 7.7E-05 21.6 2.3 27 210-236 39-65 (236)
347 PRK09473 oppD oligopeptide tra 71.5 1.8 4.5E-05 23.1 1.1 69 374-445 176-267 (330)
348 smart00178 SAR Sar1p-like memb 71.5 1.9 4.7E-05 23.0 1.2 21 217-237 16-36 (184)
349 PRK12723 flagellar biosynthesi 71.4 2.5 6.4E-05 22.1 1.8 20 217-236 173-192 (388)
350 COG1100 GTPase SAR1 and relate 71.3 1.4 3.6E-05 23.8 0.5 19 219-237 6-24 (219)
351 COG4619 ABC-type uncharacteriz 71.2 2.4 6.2E-05 22.3 1.7 62 207-284 20-81 (223)
352 PRK13542 consensus 71.1 1.8 4.5E-05 23.2 1.0 57 347-416 144-203 (224)
353 cd03259 ABC_Carb_Solutes_like 71.0 1.9 4.8E-05 23.0 1.1 57 349-417 129-188 (213)
354 TIGR02881 spore_V_K stage V sp 71.0 1.6 4.1E-05 23.5 0.8 163 185-407 12-188 (261)
355 PRK11022 dppD dipeptide transp 70.9 1.8 4.7E-05 23.1 1.1 67 375-445 169-259 (327)
356 PRK07574 formate dehydrogenase 70.9 8.2 0.00021 18.7 7.9 88 391-491 256-346 (385)
357 cd03269 ABC_putative_ATPase Th 70.8 2 5E-05 22.8 1.2 19 218-236 26-44 (210)
358 KOG0743 consensus 70.7 1.3 3.4E-05 24.0 0.3 19 219-237 236-254 (457)
359 pfam00485 PRK Phosphoribulokin 70.6 1.5 3.7E-05 23.7 0.5 17 221-237 2-18 (196)
360 cd03219 ABC_Mj1267_LivG_branch 70.4 2 5.2E-05 22.8 1.2 58 347-416 140-199 (236)
361 COG1131 CcmA ABC-type multidru 70.3 2 5.1E-05 22.8 1.2 18 218-235 31-48 (293)
362 pfam07724 AAA_2 AAA domain (Cd 70.2 1.7 4.2E-05 23.3 0.7 18 220-237 5-22 (168)
363 PRK13549 xylose transporter AT 70.1 2 5.2E-05 22.8 1.1 86 347-448 402-506 (513)
364 PRK07667 uridine kinase; Provi 70.1 2 5.1E-05 22.8 1.1 19 219-237 15-33 (190)
365 COG1122 CbiO ABC-type cobalt t 70.1 2.1 5.2E-05 22.7 1.2 25 217-241 29-53 (235)
366 TIGR02857 CydD ABC transporter 70.1 2 5.1E-05 22.8 1.1 20 217-236 377-396 (570)
367 PRK10636 putative ABC transpor 70.0 2 5E-05 22.8 1.1 19 218-236 338-356 (638)
368 KOG0989 consensus 69.8 0.65 1.7E-05 26.0 -1.5 33 219-251 58-103 (346)
369 KOG0090 consensus 69.8 2.6 6.5E-05 22.1 1.6 20 218-237 38-57 (238)
370 COG4181 Predicted ABC-type tra 69.7 2.3 6E-05 22.4 1.4 44 217-260 35-87 (228)
371 pfam00448 SRP54 SRP54-type pro 69.7 2 5.1E-05 22.8 1.0 18 219-236 2-19 (196)
372 cd01393 recA_like RecA is a b 69.7 2.5 6.3E-05 22.2 1.5 31 395-425 144-176 (226)
373 cd01123 Rad51_DMC1_radA Rad51_ 69.6 2.1 5.2E-05 22.7 1.1 24 395-418 145-168 (235)
374 cd03115 SRP The signal recogni 69.5 2 5.1E-05 22.8 1.0 17 220-236 2-18 (173)
375 pfam07728 AAA_5 AAA domain (dy 69.4 1.6 4E-05 23.5 0.5 16 221-236 2-17 (139)
376 cd00878 Arf_Arl Arf (ADP-ribos 69.4 1.8 4.6E-05 23.1 0.7 16 221-236 2-17 (158)
377 PRK10982 galactose/methyl gala 69.3 2.2 5.6E-05 22.5 1.2 19 218-236 274-292 (491)
378 PTZ00265 multidrug resistance 69.3 1.1 2.7E-05 24.6 -0.4 18 219-236 412-429 (1467)
379 PRK11288 araG L-arabinose tran 69.2 2.2 5.7E-05 22.5 1.2 59 346-417 392-453 (501)
380 COG2019 AdkA Archaeal adenylat 69.0 1.7 4.4E-05 23.3 0.6 111 219-344 5-123 (189)
381 TIGR00064 ftsY signal recognit 69.0 3.1 8E-05 21.5 1.9 135 215-374 79-245 (284)
382 KOG0061 consensus 69.0 2.2 5.5E-05 22.6 1.1 21 215-236 54-74 (613)
383 COG0467 RAD55 RecA-superfamily 68.9 2.1 5.3E-05 22.7 1.0 56 218-289 23-78 (260)
384 PRK09354 recA recombinase A; P 68.8 2.2 5.7E-05 22.5 1.1 36 218-253 60-103 (350)
385 TIGR03410 urea_trans_UrtE urea 68.8 2.3 5.8E-05 22.5 1.1 21 217-237 25-45 (230)
386 PTZ00301 uridine kinase; Provi 68.8 1.8 4.7E-05 23.1 0.7 106 219-342 4-138 (210)
387 COG1102 Cmk Cytidylate kinase 68.7 1.3 3.4E-05 24.0 -0.0 28 410-447 144-173 (179)
388 cd03268 ABC_BcrA_bacitracin_re 68.6 2.3 6E-05 22.4 1.2 19 218-236 26-44 (208)
389 PRK10762 D-ribose transporter 68.6 2.3 5.8E-05 22.4 1.1 21 217-237 277-297 (501)
390 PRK12339 2-phosphoglycerate ki 68.6 1.8 4.5E-05 23.2 0.5 20 219-238 4-23 (197)
391 cd04159 Arl10_like Arl10-like 68.5 1.7 4.4E-05 23.2 0.5 16 221-236 2-17 (159)
392 PRK06067 flagellar accessory p 68.4 2 5.1E-05 22.8 0.8 20 218-237 32-51 (241)
393 KOG1805 consensus 68.4 1.8 4.7E-05 23.1 0.6 63 218-280 685-756 (1100)
394 COG1123 ATPase components of v 68.2 2.1 5.3E-05 22.7 0.8 82 360-444 422-534 (539)
395 PRK00300 gmk guanylate kinase; 68.2 2.4 6.2E-05 22.3 1.2 19 218-236 7-25 (208)
396 cd00071 GMPK Guanosine monopho 68.1 1.9 4.9E-05 22.9 0.7 17 221-237 2-18 (137)
397 TIGR03346 chaperone_ClpB ATP-d 68.1 2 5E-05 22.9 0.7 77 377-454 741-841 (852)
398 PRK10865 protein disaggregatio 68.1 0.82 2.1E-05 25.4 -1.2 74 379-453 746-843 (857)
399 cd02024 NRK1 Nicotinamide ribo 68.1 2.1 5.5E-05 22.6 0.9 17 221-237 2-18 (187)
400 TIGR03263 guanyl_kin guanylate 67.9 2.3 5.9E-05 22.4 1.0 18 219-236 2-19 (180)
401 PRK13537 lipooligosaccharide t 67.8 2.5 6.3E-05 22.2 1.2 19 217-235 30-48 (304)
402 cd03264 ABC_drug_resistance_li 67.4 2.4 6.2E-05 22.3 1.1 18 217-235 25-42 (211)
403 COG0552 FtsY Signal recognitio 67.4 8.6 0.00022 18.6 3.9 166 184-376 106-302 (340)
404 cd03265 ABC_DrrA DrrA is the A 67.2 2.6 6.5E-05 22.1 1.1 20 216-236 25-44 (220)
405 KOG0057 consensus 66.9 3 7.7E-05 21.6 1.5 24 210-235 372-395 (591)
406 TIGR03411 urea_trans_UrtD urea 66.8 2.7 6.8E-05 22.0 1.2 20 216-236 27-46 (242)
407 PRK13768 GTPase; Provisional 66.8 2.3 5.9E-05 22.4 0.9 47 219-280 3-49 (253)
408 KOG4238 consensus 66.8 1.2 3.1E-05 24.3 -0.6 96 371-493 479-574 (627)
409 cd01128 rho_factor Transcripti 66.7 2.1 5.4E-05 22.7 0.6 49 428-479 169-221 (249)
410 COG0572 Udk Uridine kinase [Nu 66.7 2.2 5.6E-05 22.6 0.7 19 219-237 9-27 (218)
411 pfam07475 Hpr_kinase_C HPr Ser 66.5 3.3 8.3E-05 21.4 1.6 44 206-252 8-55 (171)
412 TIGR03015 pepcterm_ATPase puta 66.5 2.6 6.7E-05 22.0 1.1 41 182-237 22-62 (269)
413 PRK08116 hypothetical protein; 66.5 1.7 4.4E-05 23.2 0.2 25 219-243 109-133 (262)
414 COG1484 DnaC DNA replication p 66.3 2 5.2E-05 22.8 0.5 25 219-243 106-130 (254)
415 TIGR03345 VI_ClpV1 type VI sec 66.2 1 2.7E-05 24.7 -1.0 26 220-245 598-623 (852)
416 PRK11819 putative ABC transpor 66.1 2.7 6.9E-05 21.9 1.1 20 217-236 349-368 (556)
417 TIGR03522 GldA_ABC_ATP gliding 66.1 2.8 7.1E-05 21.8 1.2 18 218-235 28-45 (301)
418 PRK10261 glutathione transport 66.1 2.7 6.9E-05 21.9 1.1 65 375-445 479-569 (623)
419 PRK06921 hypothetical protein; 65.6 2.3 6E-05 22.4 0.7 27 217-243 115-141 (265)
420 PRK04301 radA DNA repair and r 65.5 3.7 9.5E-05 21.0 1.7 21 217-237 102-122 (318)
421 PRK10867 signal recognition pa 65.4 3.7 9.5E-05 21.0 1.7 46 186-236 73-118 (453)
422 PRK06761 hypothetical protein; 65.2 1.6 4.1E-05 23.4 -0.2 17 220-236 4-20 (281)
423 pfam00910 RNA_helicase RNA hel 65.2 2.1 5.3E-05 22.7 0.3 16 222-237 2-17 (105)
424 PRK09700 D-allose transporter 65.2 2.9 7.5E-05 21.7 1.1 19 218-236 289-307 (510)
425 COG1474 CDC6 Cdc6-related prot 65.1 2.5 6.4E-05 22.2 0.8 54 388-445 185-247 (366)
426 COG4618 ArpD ABC-type protease 64.4 3.2 8.1E-05 21.5 1.2 40 354-393 452-495 (580)
427 KOG0635 consensus 64.4 1.5 3.8E-05 23.7 -0.5 27 216-242 29-55 (207)
428 PRK13536 nodulation factor exp 64.2 3.2 8.1E-05 21.5 1.1 19 217-235 32-50 (306)
429 PRK13581 D-3-phosphoglycerate 63.9 11 0.00029 17.8 6.6 53 12-67 25-77 (524)
430 pfam00308 Bac_DnaA Bacterial d 63.8 0.41 1E-05 27.4 -3.5 18 219-236 35-52 (219)
431 TIGR02928 TIGR02928 orc1/cdc6 63.4 3.1 7.8E-05 21.6 0.9 29 311-341 160-188 (383)
432 PRK11147 ABC transporter ATPas 63.3 3.9 9.9E-05 20.9 1.5 19 218-236 345-363 (632)
433 COG3267 ExeA Type II secretory 63.3 1.4 3.6E-05 23.8 -0.8 60 195-255 29-95 (269)
434 PRK08233 hypothetical protein; 63.2 2.7 7E-05 21.9 0.7 60 402-508 94-156 (182)
435 pfam05673 DUF815 Protein of un 62.8 7.3 0.00019 19.1 2.8 152 219-412 54-212 (248)
436 pfam00931 NB-ARC NB-ARC domain 62.8 3 7.6E-05 21.7 0.8 19 219-237 20-38 (285)
437 COG4136 ABC-type uncharacteriz 62.7 1.6 4E-05 23.5 -0.6 21 217-237 27-47 (213)
438 pfam00625 Guanylate_kin Guanyl 62.7 3 7.8E-05 21.6 0.8 17 220-236 3-19 (182)
439 PHA00729 NTP-binding motif con 62.7 4 0.0001 20.8 1.4 71 390-467 124-195 (228)
440 KOG2851 consensus 62.6 5.2 0.00013 20.1 2.0 73 430-508 313-401 (412)
441 COG0542 clpA ATP-binding subun 62.6 1.3 3.3E-05 24.1 -1.1 29 220-248 523-551 (786)
442 COG4598 HisP ABC-type histidin 62.6 4 0.0001 20.8 1.4 33 217-249 31-71 (256)
443 cd02020 CMPK Cytidine monophos 62.6 1.8 4.6E-05 23.1 -0.3 16 222-237 3-18 (147)
444 COG1132 MdlB ABC-type multidru 62.6 3.5 9.1E-05 21.2 1.2 65 216-294 354-426 (567)
445 pfam02562 PhoH PhoH-like prote 62.5 2.8 7.2E-05 21.8 0.6 20 219-238 20-39 (205)
446 COG0541 Ffh Signal recognition 62.4 4.5 0.00012 20.5 1.7 19 218-236 100-118 (451)
447 pfam03668 ATP_bind_2 P-loop AT 62.3 3.5 8.8E-05 21.2 1.1 209 219-504 2-237 (284)
448 PRK11790 D-3-phosphoglycerate 61.9 12 0.00031 17.6 6.7 97 392-498 212-312 (409)
449 PRK09918 putative periplasmic 61.8 5.8 0.00015 19.7 2.1 13 331-343 206-218 (230)
450 PRK00771 signal recognition pa 61.7 3 7.8E-05 21.6 0.7 214 218-470 97-360 (433)
451 PRK00349 uvrA excinuclease ABC 61.6 2.5 6.4E-05 22.2 0.2 18 220-237 637-654 (944)
452 PRK08058 DNA polymerase III su 61.5 1.2 3.1E-05 24.3 -1.4 123 219-361 29-179 (329)
453 PRK07270 DNA polymerase III su 61.4 2.5 6.4E-05 22.2 0.2 14 475-488 507-521 (557)
454 TIGR00432 arcsn_tRNA_tgt archa 61.4 8.2 0.00021 18.7 2.8 41 4-47 50-91 (658)
455 PRK07133 DNA polymerase III su 61.3 2.5 6.4E-05 22.2 0.2 12 222-233 44-55 (718)
456 PRK09926 putative chaperone pr 61.2 5.6 0.00014 19.8 2.0 10 452-461 228-237 (245)
457 PRK05563 DNA polymerase III su 61.2 2.7 7E-05 21.9 0.4 21 429-449 484-504 (541)
458 PRK08451 DNA polymerase III su 60.7 2.9 7.4E-05 21.8 0.4 27 419-446 411-437 (523)
459 pfam03205 MobB Molybdopterin g 60.7 3.4 8.5E-05 21.3 0.8 17 220-236 2-18 (122)
460 PRK09536 btuD corrinoid ABC tr 60.6 3.8 9.8E-05 20.9 1.0 84 334-424 266-350 (409)
461 PRK06674 DNA polymerase III su 60.4 2.7 6.9E-05 21.9 0.2 39 71-123 98-139 (563)
462 PRK00023 cmk cytidylate kinase 60.3 2.1 5.5E-05 22.6 -0.3 19 219-237 5-23 (225)
463 TIGR02770 nickel_nikD nickel i 60.2 4.8 0.00012 20.3 1.5 66 215-291 10-77 (239)
464 COG4161 ArtP ABC-type arginine 60.2 4.8 0.00012 20.3 1.5 19 218-236 28-46 (242)
465 PRK05416 hypothetical protein; 60.1 4 0.0001 20.8 1.1 210 219-503 7-242 (292)
466 KOG2028 consensus 59.9 3.6 9.1E-05 21.2 0.8 17 219-235 163-179 (554)
467 PRK12724 flagellar biosynthesi 59.7 5.1 0.00013 20.1 1.6 18 219-236 224-241 (432)
468 TIGR03563 perox_SACOL1771 pero 59.5 5.6 0.00014 19.8 1.7 11 246-256 37-47 (138)
469 PRK00411 cdc6 cell division co 59.3 3.8 9.6E-05 21.0 0.8 15 221-235 58-72 (394)
470 PRK05917 DNA polymerase III su 59.2 3.1 7.9E-05 21.6 0.3 25 219-243 20-44 (290)
471 KOG2878 consensus 59.1 5.3 0.00013 20.0 1.5 24 214-237 24-50 (282)
472 TIGR00958 3a01208 antigen pept 58.8 4.5 0.00011 20.5 1.1 20 217-236 558-577 (770)
473 PRK00635 excinuclease ABC subu 58.7 2.9 7.5E-05 21.7 0.2 18 220-237 623-640 (1809)
474 COG2401 ABC-type ATPase fused 58.5 3.9 9.9E-05 20.9 0.8 49 211-259 402-451 (593)
475 COG0300 DltE Short-chain dehyd 58.4 14 0.00036 17.2 4.4 125 260-425 56-193 (265)
476 pfam00735 Septin Septin. Membe 58.3 4.1 0.00011 20.7 0.9 16 220-235 6-21 (280)
477 TIGR02782 TrbB_P P-type conjug 58.2 3.4 8.6E-05 21.3 0.4 15 221-235 142-156 (315)
478 pfam06068 TIP49 TIP49 C-termin 58.1 4.9 0.00013 20.2 1.3 24 214-237 46-69 (395)
479 cd01850 CDC_Septin CDC/Septin. 57.9 4.3 0.00011 20.6 0.9 16 220-235 6-21 (276)
480 PRK11034 clpA ATP-dependent Cl 57.6 4 0.0001 20.8 0.7 77 377-454 631-731 (758)
481 KOG0073 consensus 57.6 5.1 0.00013 20.1 1.2 23 215-237 13-35 (185)
482 cd01672 TMPK Thymidine monopho 57.4 3.4 8.7E-05 21.3 0.3 17 221-237 3-19 (200)
483 PRK12726 flagellar biosynthesi 57.3 4.9 0.00013 20.2 1.1 34 201-236 191-224 (407)
484 pfam08298 AAA_PrkA PrkA AAA do 57.2 8.8 0.00022 18.6 2.4 45 187-240 63-107 (358)
485 TIGR03420 DnaA_homol_Hda DnaA 57.1 5.2 0.00013 20.1 1.2 18 219-236 39-56 (226)
486 PRK00131 aroK shikimate kinase 57.0 3.8 9.6E-05 21.0 0.5 17 220-236 6-22 (175)
487 COG2607 Predicted ATPase (AAA+ 57.0 11 0.00029 17.9 2.9 120 218-344 85-219 (287)
488 PRK08691 DNA polymerase III su 56.9 0.22 5.5E-06 29.2 -5.9 22 218-239 322-343 (704)
489 COG0444 DppD ABC-type dipeptid 56.9 6.8 0.00017 19.3 1.8 59 388-446 179-260 (316)
490 smart00763 AAA_PrkA PrkA AAA d 56.8 3.7 9.4E-05 21.1 0.4 45 183-237 53-97 (361)
491 PRK06696 uridine kinase; Valid 56.7 2.7 6.8E-05 22.0 -0.3 18 220-237 28-45 (227)
492 PRK11331 5-methylcytosine-spec 56.6 1.8 4.5E-05 23.1 -1.2 21 216-237 193-213 (459)
493 TIGR02288 PaaN_2 phenylacetic 56.4 4.3 0.00011 20.6 0.7 70 378-476 48-122 (560)
494 PRK13409 putative ATPase RIL; 56.2 4.9 0.00012 20.2 1.0 19 218-236 365-383 (590)
495 TIGR00960 3a0501s02 Type II (G 56.1 5.1 0.00013 20.1 1.1 135 216-375 27-193 (216)
496 KOG0077 consensus 55.6 4.8 0.00012 20.3 0.8 51 219-271 21-73 (193)
497 COG4608 AppF ABC-type oligopep 55.5 6.2 0.00016 19.6 1.4 171 216-445 38-215 (268)
498 PRK12338 hypothetical protein; 55.4 4.2 0.00011 20.7 0.5 20 219-238 5-24 (320)
499 cd01983 Fer4_NifH The Fer4_Nif 55.0 3.9 1E-04 20.9 0.3 17 220-236 1-17 (99)
500 KOG0780 consensus 54.5 8.6 0.00022 18.6 2.0 20 214-233 97-116 (483)
No 1
>PTZ00311 phosphoenolpyruvate carboxykinase; Provisional
Probab=100.00 E-value=0 Score=1676.78 Aligned_cols=506 Identities=46% Similarity=0.786 Sum_probs=497.5
Q ss_pred CCCCCCCCCCCEEECCCHHHHHHHHHH-HCCCEECCCCCEEEECCCCCCCCCCCCEEECCCCCCCCCCCCC-CCCCCHHH
Q ss_conf 932378682204627988999999997-2883882685489856876568713223616886544345767-87588899
Q gi|254780826|r 1 MEKFDLEGSSRVYRNLSTSRLYEESIR-REKTILTCDGALRALTGQHTGRSAFDKFIVRDSHTENDVFWEN-NKYISPAD 78 (509)
Q Consensus 1 L~~~Gi~~~~~v~~Nls~~eL~e~ai~-~~eG~lt~~GAL~v~TG~~TGRSPkDKfIV~d~~t~d~I~Wg~-N~~i~~e~ 78 (509)
|++|||++. .|||||++++|||+||+ ++||.|+++|||+|.||+||||||||||||+|+.|+++||||+ ||||+++.
T Consensus 21 L~~~GI~~~-~V~~NLs~~eL~E~AIk~~gEG~ls~~GAL~V~TG~~TGRSPkDKfIV~d~~Ted~IwWG~vN~p~s~e~ 99 (543)
T PTZ00311 21 LTEWGLHNA-IIHRNLTAPELYEHALKLERDTSISSTGALCVLSGEKTGRSPKDKRIVKDDDTEENVWWGSVNIPLSEES 99 (543)
T ss_pred HHHHCCCCC-EEEECCCHHHHHHHHHHHCCCEEEECCCCEEEECCCCCCCCCCCCEEECCCCCCCCEEECCCCCCCCHHH
T ss_conf 998298888-7880899799999998635984883698679845897787988766818998555530188877789999
Q ss_pred HHHHHHHHHHHHCCCC-EEEEEEEEECCHHHCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCC-CCCCEEEECCCCCCCC
Q ss_conf 9999999999862794-6997425517832364028722871077899975125421113444-5661276458876374
Q gi|254780826|r 79 FDTLKADMLDYIKDKD-LFLQDLVACPHTKNAISVCVVTQYAWHSLFIRNLLKHKEDLGAVPN-MMSLQVVVLPDFSADP 156 (509)
Q Consensus 79 F~~L~~~v~~yl~~k~-lyv~D~~~Gad~~~rl~vRvite~AwhaLF~~nmFirp~~~e~~~~-~pd~tI~~aP~~~~~p 156 (509)
|+.|+++|++||++|+ +||+|+|||||++||++||||||+||||||++||||||+++|+++| +|||||+|+|+|++||
T Consensus 100 Fd~L~~kv~~yL~~kd~lyV~D~~aGAD~~~rl~VRVITE~AWHaLF~~NMFIRPt~eEL~~f~~PdftIinap~f~adp 179 (543)
T PTZ00311 100 FEKVKKRAIDYLNSRERLFVIDGYAGWDERYRLKVRVITTRAYHALFMKNMLIRPTDEELKSFGEPDFTIYNAGPHPADP 179 (543)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEEECCCHHHEEEEEEEECHHHHHHHHHHHCCCCCHHHHCCCCCCCEEEEECCCCCCCC
T ss_conf 99999999999834896899843530785322338999755789999984055888567415589988998266764672
Q ss_pred CCCCCCCCCEEEEEHHCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 22456666169977221935664136788877899999986241078799312453477787027998335431112224
Q gi|254780826|r 157 NRHGCCSETIIAVDLTAGLILIGGTSYAGEIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 157 ~~~g~~Se~~i~in~~~k~~lI~GT~YaGEiKKsiFtvmny~lp~~g~lpmHcsan~~~~~~d~alfFGLSGTGKTTLS~ 236 (509)
++||+||++||++||++|++||+||+|||||||||||||||+||++|+||||||||+|+++ |+|||||||||||||||+
T Consensus 180 ~~dG~~Set~I~in~~~k~~lI~GT~YaGEiKK~iFsvmNylLP~~~vlpMHCSaNvg~~g-d~alFFGLSGTGKTTLSa 258 (543)
T PTZ00311 180 LVDGVTSETSVALNFTRREMVILGTQYAGEMKKGILTVMMYLMPKQGILTLHSSANVGKNG-DVTLFFGLSGTGKTTLSA 258 (543)
T ss_pred CCCCCCCCCEEEEECCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC-CEEEEECCCCCCCEEEEE
T ss_conf 3368677747998714686899455144356888999999858355832013101227899-768997047787314440
Q ss_pred CCCCEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHCCCEECC-CCCEECCCCCCCCCEEEEEE
Q ss_conf 78861330311021567412345553211013583335135887530110312400578-98111147886767058986
Q gi|254780826|r 237 SVDRFLIGDDEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSASCRFGTVLENVVVDE-CGIPNFKDSSVTENTRAAYP 315 (509)
Q Consensus 237 d~~r~LigDDehgW~d~gvfn~EgGcYaK~i~Ls~~~EP~I~~aa~~~~ailENV~~d~-~~~~df~d~s~TeNtR~~yp 315 (509)
||+|.|||||||||+|+||||||||||||||+||+|.||+||+| +|||+|||||++|+ +++|||+|.|+|||||++||
T Consensus 259 Dp~R~LIGDDEHgWs~~GvFNfEGGCYAK~i~Ls~e~EP~I~~A-ir~g~vlENVv~d~~~~~~d~~d~s~TeNtR~sYP 337 (543)
T PTZ00311 259 DPNRMLIGDDEHVWTDRGVFNIEGGCYAKCIDLSKEKEPEIYNA-VKFGAVLENVVLDKVTREVDFNDISITENTRVAYP 337 (543)
T ss_pred CCCCCEECCCCCCCCCCCEECCCCCEEEECCCCCCCCCHHHHHH-HHHCHHCCEEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 79982567764440636631002512420025685678229999-75430001046747987556788855767762375
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHCCCCCCCCH
Q ss_conf 00043100025678872699960267788760444185889999974232456662000125653121001050015683
Q gi|254780826|r 316 LNFIHNHAPQSIGKHPKHVIMLAADAFGVLPPVAYLNPEKAVYYFLSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDP 395 (509)
Q Consensus 316 ~~~i~n~~~~~~~~~p~~iifl~~d~~gvlPpvsklt~~qa~~~F~sGyT~k~agte~g~~ep~~tfs~cFg~PF~~~~p 395 (509)
|+||+|++.+++++||++|||||||||||||||||||++||||||+||||||+||||+|++||++|||+|||+|||||||
T Consensus 338 i~~i~n~~~~~~~~hP~niifLt~DafGVLPPvskLt~~Qa~yhFlsGYTakvaGTE~Gv~ep~~tFS~CfGapFlp~~p 417 (543)
T PTZ00311 338 LEHIPGAKFPAVGGHPKNIIFLTCDAFGVLPPVSRLTPEQAMYHFISGYTAKVAGTEAGVKEPTATFSACFGEPFLALHP 417 (543)
T ss_pred HHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf 56634866867689986499982454577782333699999999870320145653356667864222555765566798
Q ss_pred HHHHHHHHHHHHHHCCEEEEEECCCCCCCCCC-CCCCCHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCHHH
Q ss_conf 15389999999881980999816746887688-73207889999999998496024660667887742562079899656
Q gi|254780826|r 396 VQYGNILKDYIVKYCVDCWLVNTGWTAGSYGE-GYRMPLSVTRALLKAIFDNSIKSVPYRVDENFGFSVPLEVKGVDRKL 474 (509)
Q Consensus 396 ~~ya~ll~~~i~~~~~~vyLvNTGw~Gg~~g~-G~Ri~l~~Tr~ii~ai~~g~l~~~~~~~~~~f~l~iP~~~~gv~~~~ 474 (509)
++||+||++||++|+++||||||||+||+||+ |+||+|++||+||+||++|+|++++|+.||+|||+||++|||||+++
T Consensus 418 ~~Ya~lL~~ki~~~~~~~~LvNTGW~gG~yg~~G~R~~l~~TRaii~a~l~g~l~~~~~~~~p~F~l~iP~~~~gVp~~i 497 (543)
T PTZ00311 418 TVYANMLAEKMKKHNTRVWLLNTGWIGGSYGSGGKRMPLKYTRAIIDAIHDGELDKAEYEKFPIFNLQIPKRCEGVPSEL 497 (543)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEEHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCHHH
T ss_conf 99999999999973998899957866788898841730599999999985696457851677755702667689998476
Q ss_pred CCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 49766259989999999999999999998751279
Q gi|254780826|r 475 LNPRDSWNDVEAYDQKMRELLLMFENNAEKKQIKI 509 (509)
Q Consensus 475 l~P~~~w~d~~~Y~~~a~~L~~~F~~Nf~~~~~~v 509 (509)
|+||++|+|+++|+++|++||+||++||+||+++|
T Consensus 498 L~Pr~tW~d~~~yd~~a~~La~~F~~NF~kf~~~~ 532 (543)
T PTZ00311 498 LDPRNTWKDKEEFDKQLKELAAKFQKNFKKYADKA 532 (543)
T ss_pred CCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 69856069989999999999999999999753368
No 2
>TIGR00224 pckA phosphoenolpyruvate carboxykinase (ATP); InterPro: IPR001272 Phosphoenolpyruvate carboxykinase (PEPCK) catalyses the first committed (rate-limiting) step in hepatic gluconeogenesis, namely the reversible decarboxylation of oxaloacetate to phosphoenolpyruvate (PEP) and carbon dioxide, using either ATP or GTP as a source of phosphate. The ATP-utilising (4.1.1.49 from EC) and GTP-utilising (4.1.1.32 from EC) enzymes form two divergent subfamilies, which have little sequence similarity but which retain conserved active site residues. ATP-utilising PEPCKs are monomers or oligomers of identical subunits found in certain bacteria, yeast, trypanosomatids, and plants, while GTP-utilising PEPCKs are mainly monomers found in animals and some bacteria . Both require divalent cations for activity, such as magnesium or manganese. One cation interacts with the enzyme at metal binding site 1 to elicit activation, while the second cation interacts at metal binding site 2 to serve as a metal-nucleotide substrate. In bacteria, fungi and plants, PEPCK is involved in the glyoxylate bypass, an alternative to the tricarboxylic acid cycle. PEPCK helps to regulate blood glucose levels. The rate of gluconeogenesis can be controlled through transcriptional regulation of the PEPCK gene by cAMP (the mediator of glucagon and catecholamines), glucocorticoids and insulin. In general, PEPCK expression is induced by glucagon, catecholamines and glucocorticoids during periods of fasting and in response to stress, but is inhibited by (glucose-induced) insulin upon feeding . With type II diabetes, this regulation system can fail, resulting in increased gluconeogenesis that in turn raises glucose levels . PEPCK consists of an N-terminal and a catalytic C-terminal domain, with the active site and metal ions located in a cleft between them. Both domains have an alpha/beta topology that is partly similar to one another , . Substrate binding causes PEPCK to undergo a conformational change, which accelerates catalysis by forcing bulk solvent molecules out of the active site . PCK uses an alpha/beta/alpha motif for nucleotide binding, this motif differing from other kinase domains. GTP-utilising PEPCK has a PEP-binding domain and two kinase motifs to bind GTP and magnesium. This entry represents ATP-utilising phosphoenolpyruvate carboxykinase enzymes.; GO: 0004612 phosphoenolpyruvate carboxykinase (ATP) activity, 0005524 ATP binding, 0006094 gluconeogenesis.
Probab=100.00 E-value=0 Score=1666.37 Aligned_cols=507 Identities=47% Similarity=0.786 Sum_probs=496.4
Q ss_pred CCCCCCCCCCCEEECCCHHHHHHHHHHH-----CCCEECCCCCEEEECCCCCCCCCCCCEEECCCCCCCCCCCCC-C---
Q ss_conf 9323786822046279889999999972-----883882685489856876568713223616886544345767-8---
Q gi|254780826|r 1 MEKFDLEGSSRVYRNLSTSRLYEESIRR-----EKTILTCDGALRALTGQHTGRSAFDKFIVRDSHTENDVFWEN-N--- 71 (509)
Q Consensus 1 L~~~Gi~~~~~v~~Nls~~eL~e~ai~~-----~eG~lt~~GAL~v~TG~~TGRSPkDKfIV~d~~t~d~I~Wg~-N--- 71 (509)
|+.+++....+|.||+|++.|||..+++ ++|+||++||+.|+||.||||||||||||+|+.|+|+|||++ |
T Consensus 10 lea~l~~~v~~v~~N~s~~~L~e~~l~~~L~G~~~gvlt~~GAv~~~tG~~TGRSPKDK~IV~e~~tkd~iwWg~~~k~k 89 (549)
T TIGR00224 10 LEALLIDDVKNVRYNPSAAQLYEEELKPSLEGYNKGVLTSTGAVAADTGIFTGRSPKDKYIVEEETTKDTIWWGPVNKAK 89 (549)
T ss_pred HHHHHHHCCCHHHCCCCHHHHHHHHHCCCCCCCCCCHHCCCCCEEEECCCCCCCCCCCCEEECCCCCCCCEECCCCCCCC
T ss_conf 98764210121103786788735420101232023000034312234460107788765466788876721017777764
Q ss_pred ---CCCCHHHHHHHHHHHHHHHCCC-CEEEEEEEEECCHHHCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCC-CCCCEE
Q ss_conf ---7588899999999999986279-46997425517832364028722871077899975125421113444-566127
Q gi|254780826|r 72 ---KYISPADFDTLKADMLDYIKDK-DLFLQDLVACPHTKNAISVCVVTQYAWHSLFIRNLLKHKEDLGAVPN-MMSLQV 146 (509)
Q Consensus 72 ---~~i~~e~F~~L~~~v~~yl~~k-~lyv~D~~~Gad~~~rl~vRvite~AwhaLF~~nmFirp~~~e~~~~-~pd~tI 146 (509)
|||+++.|..|+.+|.+||+.| +|||+|+||||||++||+||||||.||||||++||||||+++++..| +|||+|
T Consensus 90 nDnkP~s~~tw~~l~~~v~~yL~~r~~lfvvdaFaGa~~~~Rl~vrvv~e~Aw~alF~~nmfIRP~~e~l~~f~~PDF~v 169 (549)
T TIGR00224 90 NDNKPISEETWQRLKEKVTSYLSERDRLFVVDAFAGADEKYRLKVRVVTEVAWHALFVKNMFIRPTEEELKTFEEPDFTV 169 (549)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCEEEEEEHHHHHHHHHHHHCCCCCCHHHHCCCCCCCEEE
T ss_conf 56788898999989999999863598789982031788566215898601567777777504488713230379987688
Q ss_pred EECCCCC-CCCCCCCCCCCCEEEEEHHCCEEEEECCHHHHHHHHHHHHHHHHHCC-CCCEEEEECCCCCCCCCCEEEEEE
Q ss_conf 6458876-37422456666169977221935664136788877899999986241-078799312453477787027998
Q gi|254780826|r 147 VVLPDFS-ADPNRHGCCSETIIAVDLTAGLILIGGTSYAGEIKKSVFTYLNHIFP-ERGIMPMHCSINMDKEKEDVALFF 224 (509)
Q Consensus 147 ~~aP~~~-~~p~~~g~~Se~~i~in~~~k~~lI~GT~YaGEiKKsiFtvmny~lp-~~g~lpmHcsan~~~~~~d~alfF 224 (509)
+++|.|+ ++++.+|++||+||+|||++|++||+||+|+|||||||||||||+|| +|||++||||||+|.+.+||||||
T Consensus 170 ~na~~~~na~~k~qg~~Se~fi~~n~~~r~~lIgGTeYaGEMKKgifs~MnyLlPv~~~v~~mHcSANvG~~nGDValFF 249 (549)
T TIGR00224 170 LNAGKFTNANWKTQGLNSENFIAVNLTERTQLIGGTEYAGEMKKGIFSVMNYLLPVLKGVLSMHCSANVGEKNGDVALFF 249 (549)
T ss_pred ECCCCCCCCCCCCCCCCCCEEEEEEHHHCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCHHEECHHHCCCCCCCEEEEE
T ss_conf 62766788885547787430468633131000225100021124589999884043304021000211687578778981
Q ss_pred ECCCCCCCCCCCCCCCEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHCCCEECCC-CCEECCC
Q ss_conf 335431112224788613303110215674123455532110135833351358875301103124005789-8111147
Q gi|254780826|r 225 GLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSASCRFGTVLENVVVDEC-GIPNFKD 303 (509)
Q Consensus 225 GLSGTGKTTLS~d~~r~LigDDehgW~d~gvfn~EgGcYaK~i~Ls~~~EP~I~~aa~~~~ailENV~~d~~-~~~df~d 303 (509)
|||||||||||+||+|.|||||||||+|.||||||||||||||+||+|.||+||+| ||||+|||||++|++ +.+||||
T Consensus 250 GLSGTGKTTLSaDp~R~LIGDDEHgW~D~GvFN~EGGCYAKcI~LS~E~EP~If~A-IrfgsvLENVvv~ed~~~~dyDD 328 (549)
T TIGR00224 250 GLSGTGKTTLSADPKRKLIGDDEHGWSDTGVFNIEGGCYAKCIHLSEEKEPEIFNA-IRFGSVLENVVVDEDSGEVDYDD 328 (549)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCHHHHHCCCCCCCCCHHHHH-HHCCCEEEEEEEECCCCEECCCC
T ss_conf 67788843456786746004645664687336466760342102356777115667-50265653058835775761577
Q ss_pred CCCCCCEEEEEECCCCCCCCCCCCC-CCCCEEEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEE
Q ss_conf 8867670589860004310002567-887269996026778876044418588999997423245666200012565312
Q gi|254780826|r 304 SSVTENTRAAYPLNFIHNHAPQSIG-KHPKHVIMLAADAFGVLPPVAYLNPEKAVYYFLSGYTAKVAGTEKGVLKPEATF 382 (509)
Q Consensus 304 ~s~TeNtR~~yp~~~i~n~~~~~~~-~~p~~iifl~~d~~gvlPpvsklt~~qa~~~F~sGyT~k~agte~g~~ep~~tf 382 (509)
+|+||||||+|||+||+|++.|... +||++|||||||||||||||||||+||.|||||||||||+||||+|||||++||
T Consensus 329 ss~TENTR~aYPI~~I~niv~P~~~~~Hp~~iifLTaDAfGVLPPvSkLT~eQv~YhFlSGyTsKlAGTErGvTeP~pTF 408 (549)
T TIGR00224 329 SSKTENTRVAYPIYHIDNIVKPVLAAGHPTKIIFLTADAFGVLPPVSKLTPEQVMYHFLSGYTSKLAGTERGVTEPEPTF 408 (549)
T ss_pred CCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHEEEEEHHHHHHHCCCCCCCCCCCCCC
T ss_conf 75655452004023210105565367785504777225246788734478337036510002544315678878977743
Q ss_pred EHHHCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCC-CCCCHHHHHHHHHHHHCCCCCCCCEEECCCCCC
Q ss_conf 1001050015683153899999998819809998167468876887-320788999999999849602466066788774
Q gi|254780826|r 383 SACFGAPFMPRDPVQYGNILKDYIVKYCVDCWLVNTGWTAGSYGEG-YRMPLSVTRALLKAIFDNSIKSVPYRVDENFGF 461 (509)
Q Consensus 383 s~cFg~PF~~~~p~~ya~ll~~~i~~~~~~vyLvNTGw~Gg~~g~G-~Ri~l~~Tr~ii~ai~~g~l~~~~~~~~~~f~l 461 (509)
|+|||+|||+|||.+||+||.+||.+|++++|||||||+|+.|+.| |||+|++||+||+||++|+|++.++..+|+|||
T Consensus 409 S~CFG~pFL~Lhp~~YAe~L~kkm~~~gA~ayLvNTGW~G~~Y~tGGkR~~lkyTRAi~dai~~GsL~~ae~~tlpiFnL 488 (549)
T TIGR00224 409 SACFGAPFLALHPTQYAEMLVKKMQAHGADAYLVNTGWTGSSYVTGGKRISLKYTRAIIDAILDGSLENAEMITLPIFNL 488 (549)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 31137643256556799999999864288379983350478535686242001357999998628611120012674245
Q ss_pred CCCCCCCCCCHHHCCHHHHCCCHH-HHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 256207989965649766259989-99999999999999999875127
Q gi|254780826|r 462 SVPLEVKGVDRKLLNPRDSWNDVE-AYDQKMRELLLMFENNAEKKQIK 508 (509)
Q Consensus 462 ~iP~~~~gv~~~~l~P~~~w~d~~-~Y~~~a~~L~~~F~~Nf~~~~~~ 508 (509)
+||+.+||||++||+|+++|.+++ +|+++|..||++|++||+||+++
T Consensus 489 ~iP~~vpGVp~~iL~P~~tw~~~es~y~~ka~~LA~~F~~NF~ky~~~ 536 (549)
T TIGR00224 489 AIPTKVPGVPAEILDPRNTWANKESQYQEKAENLANLFVENFKKYADR 536 (549)
T ss_pred CCCCCCCCCCHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 476547696557658612215624678999999998878777754278
No 3
>cd00484 PEPCK_ATP Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity, this model describes the ATP-dependent groups.
Probab=100.00 E-value=0 Score=1629.63 Aligned_cols=498 Identities=49% Similarity=0.871 Sum_probs=492.0
Q ss_pred CCEEECCCHHHHHHHHHHHCCCEECCCCCEEEECCCCCCCCCCCCEEECCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHH
Q ss_conf 2046279889999999972883882685489856876568713223616886544345767-875888999999999999
Q gi|254780826|r 10 SRVYRNLSTSRLYEESIRREKTILTCDGALRALTGQHTGRSAFDKFIVRDSHTENDVFWEN-NKYISPADFDTLKADMLD 88 (509)
Q Consensus 10 ~~v~~Nls~~eL~e~ai~~~eG~lt~~GAL~v~TG~~TGRSPkDKfIV~d~~t~d~I~Wg~-N~~i~~e~F~~L~~~v~~ 88 (509)
++|||||++++|||+|++|+||+|+++|||+|+||+||||||||||||+|+.|+|+||||+ ||||+++.|+.|+++|++
T Consensus 1 s~V~~NLs~~eL~E~Al~~~EG~ls~~GAL~v~TG~~TGRSPkDKfIV~d~~t~d~IwWG~vN~pis~e~F~~L~~kv~~ 80 (508)
T cd00484 1 THIHHNLSPAELYEEALKRGEGVLTSTGALAVDTGKKTGRSPKDKFIVDEPSSEDDIWWGKVNQPISEETFEILRERAVD 80 (508)
T ss_pred CCEECCCCHHHHHHHHHHCCCEEEECCCCEEEECCCCCCCCCCCCEEECCCCCCCCEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 94142799899999999719838936986898458977989887578589985455664898778899999999999999
Q ss_pred HHCCCCEEEEEEEEECCHHHCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEE
Q ss_conf 86279469974255178323640287228710778999751254211134445661276458876374224566661699
Q gi|254780826|r 89 YIKDKDLFLQDLVACPHTKNAISVCVVTQYAWHSLFIRNLLKHKEDLGAVPNMMSLQVVVLPDFSADPNRHGCCSETIIA 168 (509)
Q Consensus 89 yl~~k~lyv~D~~~Gad~~~rl~vRvite~AwhaLF~~nmFirp~~~e~~~~~pd~tI~~aP~~~~~p~~~g~~Se~~i~ 168 (509)
||++|++||+|+||||||+||++||||||+||||||+|||||||+.+|++.|.||||||++|+|++||+.||++|+++|+
T Consensus 81 yl~~k~lyV~D~~aGaD~~~rl~VRVite~AWhaLF~~NMFIrP~~~el~~f~pd~ti~~ap~f~~~~~~~g~~S~~~i~ 160 (508)
T cd00484 81 YLNTKKLFVFDGFAGADPEYRLKVRVITERAWHALFMRNMFIRPTEEELENFGPDFTIYNAPKFKANPETDGMNSETFVI 160 (508)
T ss_pred HHCCCCEEEEEEEEECCHHHEEEEEEEECCHHHHHHHHHCCCCCCHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCEEE
T ss_conf 97179679995166069655045899973335999997512688857854779887999647874680105777773899
Q ss_pred EEHHCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEECCCE
Q ss_conf 77221935664136788877899999986241078799312453477787027998335431112224788613303110
Q gi|254780826|r 169 VDLTAGLILIGGTSYAGEIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSASVDRFLIGDDEH 248 (509)
Q Consensus 169 in~~~k~~lI~GT~YaGEiKKsiFtvmny~lp~~g~lpmHcsan~~~~~~d~alfFGLSGTGKTTLS~d~~r~LigDDeh 248 (509)
+||++|++||+||+|+|||||||||||||+||++|+||||||||+|+++ |++||||||||||||||+||+|.|||||||
T Consensus 161 in~~~~~~lI~GT~YaGEiKKsiFsvmnylLP~~~vlpMHcSAnvg~~g-d~alFFGLSGTGKTTLSaDp~r~LIGDDEh 239 (508)
T cd00484 161 INFAEREMVIGGTEYAGEMKKGIFSVMNYLLPKKGVLSMHCSANVGKKG-DVALFFGLSGTGKTTLSADPNRKLIGDDEH 239 (508)
T ss_pred EEHHHCEEEEECCHHHHHHHHHHHHHHHHHCHHCCCEEEEEECCCCCCC-CEEEEEECCCCCCEECCCCCCCCCCCCCEE
T ss_conf 6324285899537157778899999998757010842246430348899-779997237787100114898740267424
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHCCCEECC-CCCEECCCCCCCCCEEEEEECCCCCCCCCCCC
Q ss_conf 21567412345553211013583335135887530110312400578-98111147886767058986000431000256
Q gi|254780826|r 249 GWSKEGVFNFEGGCYAKSINLSKETEPEIFSASCRFGTVLENVVVDE-CGIPNFKDSSVTENTRAAYPLNFIHNHAPQSI 327 (509)
Q Consensus 249 gW~d~gvfn~EgGcYaK~i~Ls~~~EP~I~~aa~~~~ailENV~~d~-~~~~df~d~s~TeNtR~~yp~~~i~n~~~~~~ 327 (509)
||+|+||||||||||||||+||++.||+||+| ++||||||||++|+ +|+|||+|.|+|||||++|||++|+|++.+++
T Consensus 240 gW~d~GvfN~EgGCYAK~i~Ls~e~EP~I~~A-i~fgavlENVv~d~~~~~~df~d~s~TeNtR~~yP~~~i~n~~~~~~ 318 (508)
T cd00484 240 GWSDRGVFNIEGGCYAKCINLSEEKEPEIYNA-IKFGAVLENVVVDEETREVDYDDDSITENTRAAYPIEHIPNAVIPGV 318 (508)
T ss_pred EECCCCEECCCCCEEEEECCCCCCCCHHHHHH-HCCCCCCCCEEECCCCCCCCCCCCCCCCCEEEEEEHHHCCCCCCCCC
T ss_conf 43588773255650432046884525579987-52261003325747888766445767764039848676417668566
Q ss_pred CCCCCEEEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 78872699960267788760444185889999974232456662000125653121001050015683153899999998
Q gi|254780826|r 328 GKHPKHVIMLAADAFGVLPPVAYLNPEKAVYYFLSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNILKDYIV 407 (509)
Q Consensus 328 ~~~p~~iifl~~d~~gvlPpvsklt~~qa~~~F~sGyT~k~agte~g~~ep~~tfs~cFg~PF~~~~p~~ya~ll~~~i~ 407 (509)
++||++|||||||||||||||||||+||||||||||||+|+||||+|++||++|||+|||+||||+||++||+||++||+
T Consensus 319 ~~~P~~iifLt~DafGVlPPvs~Lt~eQA~y~FlsGyTakvaGtE~Gv~ep~~tFS~Cfg~pFlp~~p~~Ya~lL~~~i~ 398 (508)
T cd00484 319 GGHPKNIIFLTADAFGVLPPVSKLTPEQAMYHFLSGYTAKVAGTERGITEPTATFSACFGAPFLPLHPTVYAEMLGEKIK 398 (508)
T ss_pred CCCCCEEEEEECCCCCCCCCHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 88987799994355678682110799999999871653245665357877775323665775567798999999999998
Q ss_pred HHCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCHHHCCHHHHCCCHHHH
Q ss_conf 81980999816746887688732078899999999984960246606678877425620798996564976625998999
Q gi|254780826|r 408 KYCVDCWLVNTGWTAGSYGEGYRMPLSVTRALLKAIFDNSIKSVPYRVDENFGFSVPLEVKGVDRKLLNPRDSWNDVEAY 487 (509)
Q Consensus 408 ~~~~~vyLvNTGw~Gg~~g~G~Ri~l~~Tr~ii~ai~~g~l~~~~~~~~~~f~l~iP~~~~gv~~~~l~P~~~w~d~~~Y 487 (509)
+|+++||||||||+||+||+|+||+|++||+||+||++|+|++++|+.||+|||+||++|||||+++||||++|.|+++|
T Consensus 399 ~~~~~~~LvNTGw~GG~yg~G~R~~l~~Tr~~i~ai~~G~l~~~~~~~~~~f~~~iP~~~~gv~~~~l~Pr~~w~d~~~y 478 (508)
T cd00484 399 KHGAKVWLVNTGWTGGSYGVGKRIPLKYTRAIIDAILSGELNNAEYEKDPVFNLAIPTSIPGVPSEILNPRNTWADKEAY 478 (508)
T ss_pred HCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEECCCCCEECCCCCCCCCHHHCCHHHHCCCHHHH
T ss_conf 74997899705666778888755255999999999865975577417778657105653899884656985635798999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999999999999998751279
Q gi|254780826|r 488 DQKMRELLLMFENNAEKKQIKI 509 (509)
Q Consensus 488 ~~~a~~L~~~F~~Nf~~~~~~v 509 (509)
+++|++||++|++||+||+++|
T Consensus 479 ~~~a~~La~~F~~Nf~k~~~~~ 500 (508)
T cd00484 479 DETAKKLAKLFIENFKKFADKV 500 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9999999999999999750248
No 4
>PRK09344 phosphoenolpyruvate carboxykinase; Provisional
Probab=100.00 E-value=0 Score=1629.21 Aligned_cols=507 Identities=53% Similarity=0.897 Sum_probs=500.0
Q ss_pred CCCCCCCCCCCEEECCCHHHHHHHHHHHCCCEECCCCCEEEECCCCCCCCCCCCEEECCCCCCCCCCCCC-CCCCCHHHH
Q ss_conf 9323786822046279889999999972883882685489856876568713223616886544345767-875888999
Q gi|254780826|r 1 MEKFDLEGSSRVYRNLSTSRLYEESIRREKTILTCDGALRALTGQHTGRSAFDKFIVRDSHTENDVFWEN-NKYISPADF 79 (509)
Q Consensus 1 L~~~Gi~~~~~v~~Nls~~eL~e~ai~~~eG~lt~~GAL~v~TG~~TGRSPkDKfIV~d~~t~d~I~Wg~-N~~i~~e~F 79 (509)
|+++||++.++|||||++++|||+|++++||+++++|||+|+||++|||||||||||+|+.|+|+||||+ ||||+++.|
T Consensus 6 L~~~Gi~~~~~v~~NLs~~eL~E~Al~~~EG~lt~~GAL~v~TGk~TGRSPkDKfIV~d~~t~d~IwWG~vN~pis~e~F 85 (525)
T PRK09344 6 LEALGIKNVKEVHYNLSYAQLYEEALRRGEGVLTANGALVVDTGKFTGRSPKDKYIVEDPSTEDTIWWGDVNKPISPEKF 85 (525)
T ss_pred HHHHCCCCCCEEEECCCHHHHHHHHHHCCCCEEECCCCEEEECCCCCCCCCCCCEEECCCCCCCCEEECCCCCCCCHHHH
T ss_conf 88828998783787889899999999739808936875898358867979766368279985455534787768899999
Q ss_pred HHHHHHHHHHHCCCCEEEEEEEEECCHHHCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCCC
Q ss_conf 99999999986279469974255178323640287228710778999751254211134445661276458876374224
Q gi|254780826|r 80 DTLKADMLDYIKDKDLFLQDLVACPHTKNAISVCVVTQYAWHSLFIRNLLKHKEDLGAVPNMMSLQVVVLPDFSADPNRH 159 (509)
Q Consensus 80 ~~L~~~v~~yl~~k~lyv~D~~~Gad~~~rl~vRvite~AwhaLF~~nmFirp~~~e~~~~~pd~tI~~aP~~~~~p~~~ 159 (509)
+.|+++|++||++|++||+|+||||||+||++||||||+||||||+|||||||+.+|++.|.|||||+++|+|++||++|
T Consensus 86 d~L~~kv~~yL~~kdlyV~D~~aGadp~~rl~VRVItE~AWhaLF~~NMFIrP~~~el~~f~PdftIi~aP~f~adp~~~ 165 (525)
T PRK09344 86 DALKQKVLAYLSGKDLFVVDGFAGADPDYRLPVRVITEVAWHALFARNLFIRPSEEELASFEPDFTIINAPKFKADPERD 165 (525)
T ss_pred HHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCEEEEECHHHHHHHHHHHCCCCCHHHHCCCCCCEEEEEECCCCCCHHHC
T ss_conf 99999999998279769997564068432411799861468999887531587736735789875999826864783550
Q ss_pred CCCCCCEEEEEHHCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCC
Q ss_conf 56666169977221935664136788877899999986241078799312453477787027998335431112224788
Q gi|254780826|r 160 GCCSETIIAVDLTAGLILIGGTSYAGEIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSASVD 239 (509)
Q Consensus 160 g~~Se~~i~in~~~k~~lI~GT~YaGEiKKsiFtvmny~lp~~g~lpmHcsan~~~~~~d~alfFGLSGTGKTTLS~d~~ 239 (509)
|++|+++|++||++|++||+||+|+|||||||||||||+||+||+||||||||+|+++ |++||||||||||||||+||+
T Consensus 166 g~~S~~~i~in~~~~~~lI~Gt~YaGE~KKsifsvmnyllP~~~vlpMHcsAn~g~~g-d~alfFGLSGTGKTTLSadp~ 244 (525)
T PRK09344 166 GTNSETFIAVNFTERIVLIGGTWYAGEMKKSIFSVMNYLLPLKGVLPMHCSANVGEEG-DVALFFGLSGTGKTTLSADPK 244 (525)
T ss_pred CCCCCCEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCC-CEEEEEECCCCCCEEEEECCC
T ss_conf 7777738999824674999566115567899999999658446768875311448999-758997327787246664799
Q ss_pred CEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHCCCEECCCCCEECCCCCCCCCEEEEEECCCC
Q ss_conf 61330311021567412345553211013583335135887530110312400578981111478867670589860004
Q gi|254780826|r 240 RFLIGDDEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSASCRFGTVLENVVVDECGIPNFKDSSVTENTRAAYPLNFI 319 (509)
Q Consensus 240 r~LigDDehgW~d~gvfn~EgGcYaK~i~Ls~~~EP~I~~aa~~~~ailENV~~d~~~~~df~d~s~TeNtR~~yp~~~i 319 (509)
|.|||||||||+|+||||||||||||||+||+|+||+||+| ++||||||||++|++|+|||+|.|+|||||++|||+||
T Consensus 245 r~LIGDDehgWs~~gvfNfEGGCYAK~i~Ls~e~EP~I~~A-i~~gavlENV~~d~~~~~df~d~s~TeNtR~~yPi~~I 323 (525)
T PRK09344 245 RKLIGDDEHGWDDGGVFNFEGGCYAKTINLSKEAEPEIYDA-IRFGAVLENVVVDETGVPDFDDGSLTENTRAAYPIEHI 323 (525)
T ss_pred CCEECCCCCCCCCCCEEEECCCEEEEECCCCCCCCHHHHHH-HCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEHHHH
T ss_conf 85224764431677535633861665426885637679997-50272433578779997045688766634188376760
Q ss_pred CCCCCCCCCCCCCEEEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHCCCCCCCCHHHHH
Q ss_conf 31000256788726999602677887604441858899999742324566620001256531210010500156831538
Q gi|254780826|r 320 HNHAPQSIGKHPKHVIMLAADAFGVLPPVAYLNPEKAVYYFLSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYG 399 (509)
Q Consensus 320 ~n~~~~~~~~~p~~iifl~~d~~gvlPpvsklt~~qa~~~F~sGyT~k~agte~g~~ep~~tfs~cFg~PF~~~~p~~ya 399 (509)
+|++.++.++||++||||||||||||||||||||||||||||||||+|+||||+|++||++|||+|||+||||+||.+||
T Consensus 324 ~n~~~~~~~~~P~~iifLT~DafGVlPpvskLt~eQA~y~FlsGyTakvaGtE~Gvtep~~tFS~cfg~PF~p~~p~~Ya 403 (525)
T PRK09344 324 PNIVKPSRAGHPKNIIFLTADAFGVLPPVSKLTPEQAMYHFLSGYTAKVAGTERGVTEPKPTFSTCFGAPFLPLHPTVYA 403 (525)
T ss_pred HCCCCCCCCCCCCEEEEEECCCCCCCCCHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHHH
T ss_conf 07677555789755999963555676702117999999998704300246767787764630346768753558999999
Q ss_pred HHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCHHHCCHHH
Q ss_conf 99999998819809998167468876887320788999999999849602466066788774256207989965649766
Q gi|254780826|r 400 NILKDYIVKYCVDCWLVNTGWTAGSYGEGYRMPLSVTRALLKAIFDNSIKSVPYRVDENFGFSVPLEVKGVDRKLLNPRD 479 (509)
Q Consensus 400 ~ll~~~i~~~~~~vyLvNTGw~Gg~~g~G~Ri~l~~Tr~ii~ai~~g~l~~~~~~~~~~f~l~iP~~~~gv~~~~l~P~~ 479 (509)
+||++||++|+++||||||||+||+||+|+||+|++||+||+||++|+|++++|+.||+|||+||++|+|||+++|+||+
T Consensus 404 ~~L~~~i~~~~~~~~LvNTGw~gg~yg~g~r~~l~~tr~~v~a~~~g~l~~~~~~~~~~fg~~iP~~~~gv~~~~l~P~~ 483 (525)
T PRK09344 404 ELLGERIKAHGAQVYLVNTGWTGGPYGVGKRISIKYTRAIVNAILDGSLDNAEFTTDPIFGLAVPTSVPGVDLEILDPRN 483 (525)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCCCCEECHHHHHHHHHHHHCCCCCCCCEEECCCCCEECCCCCCCCCHHHCCHHH
T ss_conf 99999999739978997045345777884165459999999999719755785168786683366758999938779856
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHH-HHCCC
Q ss_conf 2599899999999999999999987-51279
Q gi|254780826|r 480 SWNDVEAYDQKMRELLLMFENNAEK-KQIKI 509 (509)
Q Consensus 480 ~w~d~~~Y~~~a~~L~~~F~~Nf~~-~~~~v 509 (509)
+|.|+++|+++|++|+++|++||+| |++.|
T Consensus 484 ~w~d~~~y~~~a~~La~~f~~nf~~~~~~~~ 514 (525)
T PRK09344 484 TWADKAAYDEKAKKLARRFIENFEKFFEDDV 514 (525)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 3389899999999999999999987431259
No 5
>COG1866 PckA Phosphoenolpyruvate carboxykinase (ATP) [Energy production and conversion]
Probab=100.00 E-value=0 Score=1538.30 Aligned_cols=507 Identities=53% Similarity=0.895 Sum_probs=498.7
Q ss_pred CCCCCCCCCCCEEECCCHHHHHHHHHHHCCCEECCCCCEEEECCCCCCCCCCCCEEECCCCCCCCCCCCC-CCCCCHHHH
Q ss_conf 9323786822046279889999999972883882685489856876568713223616886544345767-875888999
Q gi|254780826|r 1 MEKFDLEGSSRVYRNLSTSRLYEESIRREKTILTCDGALRALTGQHTGRSAFDKFIVRDSHTENDVFWEN-NKYISPADF 79 (509)
Q Consensus 1 L~~~Gi~~~~~v~~Nls~~eL~e~ai~~~eG~lt~~GAL~v~TG~~TGRSPkDKfIV~d~~t~d~I~Wg~-N~~i~~e~F 79 (509)
|+.+|+.+...|++||+.++|+|++++++||.++++|||+++||+||||||||||||+|+.|++.|||+. ||||++|.|
T Consensus 10 ~~~~~~~~~~~v~~n~s~~~L~e~~i~~~eg~lt~~Gal~~~TG~~TGRSPkDkfiV~~~~t~~~i~W~~~Nkpi~~e~f 89 (529)
T COG1866 10 LEALGIRDVEDVVYNLSAAQLYEEAIRRGEGVLTATGALRVDTGIYTGRSPKDKFIVRDDSTRDTIWWGTRNKPISPETF 89 (529)
T ss_pred HHHHCCCCHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHH
T ss_conf 98862441277873678999999987458875577763688505435779887468736663113565656665798999
Q ss_pred HHHHHHHHHHHCCCCEEEEEEEEECCHHHCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCCC
Q ss_conf 99999999986279469974255178323640287228710778999751254211134445661276458876374224
Q gi|254780826|r 80 DTLKADMLDYIKDKDLFLQDLVACPHTKNAISVCVVTQYAWHSLFIRNLLKHKEDLGAVPNMMSLQVVVLPDFSADPNRH 159 (509)
Q Consensus 80 ~~L~~~v~~yl~~k~lyv~D~~~Gad~~~rl~vRvite~AwhaLF~~nmFirp~~~e~~~~~pd~tI~~aP~~~~~p~~~ 159 (509)
+.|+.+|.+|+++|++||+|+|||||+++|+++|||||.|||+||++||||||+.+++..+.|||+|+++|+|+++|+++
T Consensus 90 ~~L~~~~~~yl~~k~lfv~d~~~Ga~~~~~l~vrvvte~Awh~lF~~nlfIrP~~e~l~~~~~dftvin~p~f~~~~~~~ 169 (529)
T COG1866 90 DRLKGDVTDYLSGKDLFVVDGFAGADPDYRLPVRVVTEVAWHALFIRNLFIRPTGEELSTFKPDFTVINAPSFKADPKRD 169 (529)
T ss_pred HHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEEEEEHHHHHHHHHHHHCCCCCCHHHHCCCCCCEEEEECCCCCCCHHHC
T ss_conf 99999999986268579998650578100103676415678999987432356545644599874998378678785341
Q ss_pred CCCCCCEEEEEHHCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCC
Q ss_conf 56666169977221935664136788877899999986241078799312453477787027998335431112224788
Q gi|254780826|r 160 GCCSETIIAVDLTAGLILIGGTSYAGEIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSASVD 239 (509)
Q Consensus 160 g~~Se~~i~in~~~k~~lI~GT~YaGEiKKsiFtvmny~lp~~g~lpmHcsan~~~~~~d~alfFGLSGTGKTTLS~d~~ 239 (509)
|+|||++|++||++++++|+||+|+|||||||||+|||+||.++++|||||||+|.. +|++||||||||||||||+||+
T Consensus 170 g~~Se~~i~~n~~~~~~lIggT~YaGEMKK~~fs~mnylLP~~~i~~MHcsANvG~~-gdvalFFGLSGTGKTTLSaDp~ 248 (529)
T COG1866 170 GLRSETFVAFNFTERIVLIGGTWYAGEMKKGIFSVMNYLLPLKGILSMHCSANVGEK-GDVALFFGLSGTGKTTLSADPH 248 (529)
T ss_pred CCCCCCEEEEECCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCC-CCEEEEEECCCCCCCEECCCCC
T ss_conf 656653899842101566504201335666388786405540455440000343767-8769999526788521334876
Q ss_pred CEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHCCCEECCCCCEECCCCCCCCCEEEEEECCCC
Q ss_conf 61330311021567412345553211013583335135887530110312400578981111478867670589860004
Q gi|254780826|r 240 RFLIGDDEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSASCRFGTVLENVVVDECGIPNFKDSSVTENTRAAYPLNFI 319 (509)
Q Consensus 240 r~LigDDehgW~d~gvfn~EgGcYaK~i~Ls~~~EP~I~~aa~~~~ailENV~~d~~~~~df~d~s~TeNtR~~yp~~~i 319 (509)
|+|||||||||+|.||||||||||||||+||+|+||+||+| ++++|||||||+|++|.|||+|+|+||||||+|||+||
T Consensus 249 R~LIGDDEHgW~d~GVFN~EGGCYAK~I~Ls~e~EP~I~~A-i~~~avLENVVvdedg~~Df~D~SlTeNTR~aYpi~~I 327 (529)
T COG1866 249 RRLIGDDEHGWDDRGVFNFEGGCYAKTINLSEEKEPEIYAA-IKRGAVLENVVVDEDGTPDFDDGSLTENTRAAYPIEHI 327 (529)
T ss_pred CCCCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHCHHHHHH-HHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHC
T ss_conf 42016763366777658612752311046761105468877-61362123478757888677666546443110617665
Q ss_pred CCCCCCCCCCCCCEEEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHCCCCCCCCHHHHH
Q ss_conf 31000256788726999602677887604441858899999742324566620001256531210010500156831538
Q gi|254780826|r 320 HNHAPQSIGKHPKHVIMLAADAFGVLPPVAYLNPEKAVYYFLSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYG 399 (509)
Q Consensus 320 ~n~~~~~~~~~p~~iifl~~d~~gvlPpvsklt~~qa~~~F~sGyT~k~agte~g~~ep~~tfs~cFg~PF~~~~p~~ya 399 (509)
||++..+.++||++||||||||||||||||||||||||||||||||+|+||||+|++||+||||+|||+||||+||++||
T Consensus 328 pn~~~~~~~ghp~~iIfLTaDafGVlPPvsrLTpeQamYhFlsG~TaK~agTE~Gvtep~pTFStCFGaPFmp~hp~~YA 407 (529)
T COG1866 328 PNVSPSVKAGHPKNVIFLTADAFGVLPPVSRLTPEQAMYHFLSGYTAKLAGTERGVTEPEPTFSTCFGAPFMPLHPTRYA 407 (529)
T ss_pred CCCCCCCCCCCCCEEEEEECCCCCCCCCCHHCCHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 55586544689855999965324788961115999999998712022013434688999763024457755677765899
Q ss_pred HHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCHHHCCHHH
Q ss_conf 99999998819809998167468876887320788999999999849602466066788774256207989965649766
Q gi|254780826|r 400 NILKDYIVKYCVDCWLVNTGWTAGSYGEGYRMPLSVTRALLKAIFDNSIKSVPYRVDENFGFSVPLEVKGVDRKLLNPRD 479 (509)
Q Consensus 400 ~ll~~~i~~~~~~vyLvNTGw~Gg~~g~G~Ri~l~~Tr~ii~ai~~g~l~~~~~~~~~~f~l~iP~~~~gv~~~~l~P~~ 479 (509)
++|.++|++|+++||||||||+||+||+||||+|++||+||+||++|+|+++||+.|++|||+||++|||||+++||||+
T Consensus 408 ~~L~~~i~~~~~~vyLvNTGWtGg~yg~GkRi~ik~TRall~a~l~G~l~nae~~~d~~f~l~iP~~~pGV~~~ilnP~~ 487 (529)
T COG1866 408 ELLGKLIKAHGANVYLVNTGWTGGAYGTGKRIPIKYTRALLDAILDGSLENAETKTDPIFGLAIPVALPGVDSDILNPRN 487 (529)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 99999999839958999467568877776433888999999998606423542321354561366447997701159556
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 259989999999999999999998751279
Q gi|254780826|r 480 SWNDVEAYDQKMRELLLMFENNAEKKQIKI 509 (509)
Q Consensus 480 ~w~d~~~Y~~~a~~L~~~F~~Nf~~~~~~v 509 (509)
||.|+++|+.+|++|+++|++||+||+..+
T Consensus 488 tw~dk~~y~~~a~~La~~F~~NF~k~~~~~ 517 (529)
T COG1866 488 TWADKAAYDEKARRLAKLFIENFKKYEDLA 517 (529)
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 533589999999999999997433304465
No 6
>pfam01293 PEPCK_ATP Phosphoenolpyruvate carboxykinase.
Probab=100.00 E-value=0 Score=1464.07 Aligned_cols=449 Identities=55% Similarity=0.950 Sum_probs=443.3
Q ss_pred CCCEEECCCHHHHHHHHHHHCCCEECCCCCEEEECCCCCCCCCCCCEEECCCCCCCCCCCCC-CCCCCHHHHHHHHHHHH
Q ss_conf 22046279889999999972883882685489856876568713223616886544345767-87588899999999999
Q gi|254780826|r 9 SSRVYRNLSTSRLYEESIRREKTILTCDGALRALTGQHTGRSAFDKFIVRDSHTENDVFWEN-NKYISPADFDTLKADML 87 (509)
Q Consensus 9 ~~~v~~Nls~~eL~e~ai~~~eG~lt~~GAL~v~TG~~TGRSPkDKfIV~d~~t~d~I~Wg~-N~~i~~e~F~~L~~~v~ 87 (509)
+++|||||++++|||+|++++||+++++|||+|.||++|||||||||||+|+.|+|+||||+ ||||+++.|+.|+++|+
T Consensus 1 ~~~v~~NL~~~~L~e~Al~~~eG~lt~~GAL~v~TGk~TGRSPkDKfIV~d~~t~d~VwWG~vN~pis~e~F~~L~~kv~ 80 (451)
T pfam01293 1 SANVYYNLSPAELYEEALRRGEGVLTSTGALVVDTGKFTGRSPKDKFIVRDPSTKDNIWWGDVNKPISPEKFDALKERVL 80 (451)
T ss_pred CCEEEECCCHHHHHHHHHHCCCCEEECCCCEEEECCCCCCCCCCCCEEECCCCCCCCEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 97047279989999999874983890688789866997688987606947998534340078766689999999999999
Q ss_pred HHHCCCCEEEEEEEEECCHHHCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEE
Q ss_conf 98627946997425517832364028722871077899975125421113444566127645887637422456666169
Q gi|254780826|r 88 DYIKDKDLFLQDLVACPHTKNAISVCVVTQYAWHSLFIRNLLKHKEDLGAVPNMMSLQVVVLPDFSADPNRHGCCSETII 167 (509)
Q Consensus 88 ~yl~~k~lyv~D~~~Gad~~~rl~vRvite~AwhaLF~~nmFirp~~~e~~~~~pd~tI~~aP~~~~~p~~~g~~Se~~i 167 (509)
+||++|++||+|+|||||++||++||||||+|||+||+|||||||+++|++.|+||||||++|+|++||+.||++|+++|
T Consensus 81 ~yl~~k~lyV~D~~aGad~~~rl~VRvite~AWh~LF~~nMfirP~~~el~~f~Pd~tIi~aP~f~~~p~~dg~~S~~~i 160 (451)
T pfam01293 81 DYLSGKDLFVVDLFAGADPDYRLKVRVVTERAWHALFVRNMFIRPTEEELANFEPDFTIINAPSFKADPERDGTNSETFI 160 (451)
T ss_pred HHHHCCCEEEEEEEECCCHHHCEEEEEEEHHHHHHHHHHHCCCCCCHHHHCCCCCCEEEEEECCCCCCHHHCCCCCCEEE
T ss_conf 99707966998512066832343079976278999998631568883673467888699983782167243377776189
Q ss_pred EEEHHCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEECCC
Q ss_conf 97722193566413678887789999998624107879931245347778702799833543111222478861330311
Q gi|254780826|r 168 AVDLTAGLILIGGTSYAGEIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSASVDRFLIGDDE 247 (509)
Q Consensus 168 ~in~~~k~~lI~GT~YaGEiKKsiFtvmny~lp~~g~lpmHcsan~~~~~~d~alfFGLSGTGKTTLS~d~~r~LigDDe 247 (509)
++||++|++||+||+|+|||||||||||||+||+||+||||||||+|+++ |++||||||||||||||+||+|.||||||
T Consensus 161 ~in~~~~~~lI~Gt~YaGEiKK~ifsvmnyllp~~~vlpmHcsan~g~~g-d~alfFGLSGTGKTTLSaDp~R~LIGDDE 239 (451)
T pfam01293 161 IINFERRIVLIGGTEYAGEMKKSIFSVMNYLLPLKGVLPMHCSANVGEDG-DVALFFGLSGTGKTTLSADPNRRLIGDDE 239 (451)
T ss_pred EEEHHCCEEEEECCCHHHHHHHHHHHHHHHHCHHCCEEEEEEECCCCCCC-CEEEEEECCCCCCEEEECCCCCEEECCCE
T ss_conf 99810287999567125567899999998756114928875110126899-74899821677733451488860662765
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHCCCEECC-CCCEECCCCCCCCCEEEEEECCCCCCCCCCC
Q ss_conf 021567412345553211013583335135887530110312400578-9811114788676705898600043100025
Q gi|254780826|r 248 HGWSKEGVFNFEGGCYAKSINLSKETEPEIFSASCRFGTVLENVVVDE-CGIPNFKDSSVTENTRAAYPLNFIHNHAPQS 326 (509)
Q Consensus 248 hgW~d~gvfn~EgGcYaK~i~Ls~~~EP~I~~aa~~~~ailENV~~d~-~~~~df~d~s~TeNtR~~yp~~~i~n~~~~~ 326 (509)
|||+++||||||||||||||+||+|.||+||+| ++||||||||++|+ +++|||+|.|+|||||++|||++|+|++.++
T Consensus 240 hgW~~~GvfnfEGGCYAK~i~Ls~e~EP~I~~A-i~~gavlENV~~d~~~~~~df~d~s~TeNtR~~yP~~~i~n~~~~~ 318 (451)
T pfam01293 240 HGWSDNGVFNFEGGCYAKTINLSEEKEPEIYNA-IRFGAVLENVVVDPETREVDFDDTSLTENTRVAYPIEHIPNAVEPG 318 (451)
T ss_pred EEECCCCEEEECCCEEEEECCCCCCCCCHHHHH-HCCCCEEHEEEECCCCCCCCCCCCCCCCCCEEEEEHHHCCCCCCCC
T ss_conf 002688869945864631047883347329987-3313100005774688867777887666321896877755766755
Q ss_pred CCCCCCEEEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf 67887269996026778876044418588999997423245666200012565312100105001568315389999999
Q gi|254780826|r 327 IGKHPKHVIMLAADAFGVLPPVAYLNPEKAVYYFLSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNILKDYI 406 (509)
Q Consensus 327 ~~~~p~~iifl~~d~~gvlPpvsklt~~qa~~~F~sGyT~k~agte~g~~ep~~tfs~cFg~PF~~~~p~~ya~ll~~~i 406 (509)
.++||++|||||||||||||||||||+||||||||||||+|+||||+|++||++|||+|||+||||+||.+||+||++||
T Consensus 319 ~~~~P~~IifLt~DafGVlPPvskLt~eQA~y~FlsGyTak~agtE~Gv~ep~~tfs~cfg~pF~~~~p~~ya~lL~~~i 398 (451)
T pfam01293 319 VGGHPKNIIFLTADAFGVLPPVSKLTPEQAMYHFLSGYTAKVAGTERGVTEPEATFSACFGAPFLPLHPTVYAELLGEKI 398 (451)
T ss_pred CCCCCCEEEEEECCCCCCCCCHHHCCHHHHHHHHHHCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 47898779999526667767233179999999987051002355556766778514246687653688899999999999
Q ss_pred HHHCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEECCCC
Q ss_conf 88198099981674688768873207889999999998496024660667887
Q gi|254780826|r 407 VKYCVDCWLVNTGWTAGSYGEGYRMPLSVTRALLKAIFDNSIKSVPYRVDENF 459 (509)
Q Consensus 407 ~~~~~~vyLvNTGw~Gg~~g~G~Ri~l~~Tr~ii~ai~~g~l~~~~~~~~~~f 459 (509)
++|+++||||||||+||+||+|+||+|++||+||+||++|+|++++|+.||+|
T Consensus 399 ~~~~~~~~LvNTGw~Gg~yg~G~R~~l~~Tr~~i~ail~g~l~~~~~~~~~~f 451 (451)
T pfam01293 399 KEHGVNVYLVNTGWTGGPYGVGKRMPIKYTRAIIDAILDGSLENVEFTTDPVF 451 (451)
T ss_pred HHCCCCEEEEECCCCCCCCCCCCEECHHHHHHHHHHHHCCCCCCCCCEECCCC
T ss_conf 97399789994775577888754626799999999996697347851558889
No 7
>cd01919 PEPCK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).
Probab=100.00 E-value=0 Score=1363.89 Aligned_cols=492 Identities=33% Similarity=0.456 Sum_probs=479.7
Q ss_pred CEEECCCHHHHHHHHHH-HCCCEECCCCCEEEECCCCCCCCCCCCEEECCCCCCCCCCC----CC-CCCCCHHHHHHHHH
Q ss_conf 04627988999999997-28838826854898568765687132236168865443457----67-87588899999999
Q gi|254780826|r 11 RVYRNLSTSRLYEESIR-REKTILTCDGALRALTGQHTGRSAFDKFIVRDSHTENDVFW----EN-NKYISPADFDTLKA 84 (509)
Q Consensus 11 ~v~~Nls~~eL~e~ai~-~~eG~lt~~GAL~v~TG~~TGRSPkDKfIV~d~~t~d~I~W----g~-N~~i~~e~F~~L~~ 84 (509)
+|||||+.++|+|+||+ ++||+|+++|||+|.||++|||||+|||||+|+.|++.||| |+ |+||+++.|+.|++
T Consensus 2 ~vh~nl~~~~L~e~ale~~~eg~L~~~GaL~v~TG~~TGRSPkDKFIV~e~~t~d~vwW~~dwG~vN~p~~~e~f~~l~~ 81 (515)
T cd01919 2 HIHINDENGRLLQQMLEEYGILRLTKNGALAVTDPRDTGRSPSDKVIVTQDQRRTVPIPKTGLSQLNRWLSEEDFEKAFN 81 (515)
T ss_pred CEEECCCHHHHHHHHHHCCCCEEECCCCEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 51616898999999997599079769915997489864628888189678876675430377787788789999999999
Q ss_pred HHHHHH-CCCCEEEEEEEEECCHHHCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCC-CCCCEEEECCCCCCCCCCC-CC
Q ss_conf 999986-27946997425517832364028722871077899975125421113444-5661276458876374224-56
Q gi|254780826|r 85 DMLDYI-KDKDLFLQDLVACPHTKNAISVCVVTQYAWHSLFIRNLLKHKEDLGAVPN-MMSLQVVVLPDFSADPNRH-GC 161 (509)
Q Consensus 85 ~v~~yl-~~k~lyv~D~~~Gad~~~rl~vRvite~AwhaLF~~nmFirp~~~e~~~~-~pd~tI~~aP~~~~~p~~~-g~ 161 (509)
++.+|+ ++|++||+|+|||+|++||++||+|||+|||+||+|||||||+.+++..+ .|+|+|+++|++++||+.+ |+
T Consensus 82 ~~~~~l~~gk~lyV~d~~~Gad~~~~l~vrvITe~Awh~LF~rnMfirP~~eel~~f~~p~~~i~~a~~~~~d~~~~~g~ 161 (515)
T cd01919 82 ARFPGLMKGRTLFVVDFFMGPGSPLRLIVRELTDSPYVAAFMRIMTIMPTDEELAAFGDPDVKCLNSVGCPLPLQKWPGL 161 (515)
T ss_pred HHHHHHHCCCCEEEEEEEECCCCCCCEEEEEEECCHHHHHHHHHHCCCCCHHHHHCCCCCCEEEEECCCCCCCCCCCCCC
T ss_conf 99999862994899612666997642479999787769999998734998788840589998998378997871438998
Q ss_pred CCCCEEEEEHHCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCE
Q ss_conf 66616997722193566413678887789999998624107879931245347778702799833543111222478861
Q gi|254780826|r 162 CSETIIAVDLTAGLILIGGTSYAGEIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSASVDRF 241 (509)
Q Consensus 162 ~Se~~i~in~~~k~~lI~GT~YaGEiKKsiFtvmny~lp~~g~lpmHcsan~~~~~~d~alfFGLSGTGKTTLS~d~~r~ 241 (509)
+|+++|++||++|++||+||+|+||||||+||+|||+||++|+||||||||+++++ |+++|||||||||||||+||+|.
T Consensus 162 ~s~~~I~~~~~~r~ili~GT~YaGe~KK~~f~v~ny~lp~~gvL~mHcsan~g~~g-d~a~ffGlSGTGKTTLS~d~~r~ 240 (515)
T cd01919 162 PSLTLVAHNPDRREQIIFGTGYGGEMKKGFLRMMSRLAPEEGWLAMHMSANVGTNG-DVLVFFGLSGTGKTTLSMDPKRE 240 (515)
T ss_pred CCCEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCC-CEEEEEECCCCCHHHHHHCCCCE
T ss_conf 87549998510068999446402466777999878654204841310334405689-88999706666743387687855
Q ss_pred EEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHCCCEECCCCCEECCCCCCCCCEEEEEECCCCCC
Q ss_conf 33031102156741234555321101358333513588753011031240057898111147886767058986000431
Q gi|254780826|r 242 LIGDDEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSASCRFGTVLENVVVDECGIPNFKDSSVTENTRAAYPLNFIHN 321 (509)
Q Consensus 242 LigDDehgW~d~gvfn~EgGcYaK~i~Ls~~~EP~I~~aa~~~~ailENV~~d~~~~~df~d~s~TeNtR~~yp~~~i~n 321 (509)
|||||||+|+++||||+|||||||||+||++.||+||+| +++|+|+|||++|++|.|||+|.|+|+|||++||+++|||
T Consensus 241 LIGDDehgw~~~GvfN~EgGcyak~~~ls~~~eP~i~~a-i~~gti~eNV~~~~~~~~d~~d~s~t~NtR~~yPl~~i~~ 319 (515)
T cd01919 241 LIGDDEHWWKDDGVFNPEGGCYAKAIGLSVKTEPNIYKA-IRKNAIFENVAETSDGGIDFEDISAHPNTRVCYPASHIPI 319 (515)
T ss_pred EECCCEEEEECCCEECCCCEEEEEECCCCCCCCHHHHHH-HHHCCEEEEEEECCCCCEEECCCCCCCCCCEEEEHHHCCC
T ss_conf 874625578438556336506887348887769999999-8637650003675888543024668876666748887987
Q ss_pred CCCC-CCCCCCCEEEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHCCCCCCCCHHHHHH
Q ss_conf 0002-567887269996026778876044418588999997423245666200012565312100105001568315389
Q gi|254780826|r 322 HAPQ-SIGKHPKHVIMLAADAFGVLPPVAYLNPEKAVYYFLSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGN 400 (509)
Q Consensus 322 ~~~~-~~~~~p~~iifl~~d~~gvlPpvsklt~~qa~~~F~sGyT~k~agte~g~~ep~~tfs~cFg~PF~~~~p~~ya~ 400 (509)
++.+ +.++||++||||+||||||||||+|||++||+|||+||||+|+||||+|++||++|||+|||+||||+||.+||+
T Consensus 320 ~~~~~~~g~~p~~iifl~~da~gvlPpv~~l~~~qa~y~f~sgyt~k~agte~gv~e~~~tfs~cfg~PF~~~~~~~Ya~ 399 (515)
T cd01919 320 IDAAWESAGHIEGVIFLTRDAFGVVPPVYRLTWQQGVFVFAAGRTAATAGTEAGHKGKIPMFSPCFGRPFLGYHFTKYLE 399 (515)
T ss_pred CCCHHHCCCCCCEEEEEEECCCCCCCHHHHHCHHHHHHHHHHCCCHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHH
T ss_conf 66833227986258996104578762164406888888877425300123431357861532533367656568999999
Q ss_pred HHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCHHHCCHHHH
Q ss_conf 99999988198099981674688768873207889999999998496024660667887742562079899656497662
Q gi|254780826|r 401 ILKDYIVKYCVDCWLVNTGWTAGSYGEGYRMPLSVTRALLKAIFDNSIKSVPYRVDENFGFSVPLEVKGVDRKLLNPRDS 480 (509)
Q Consensus 401 ll~~~i~~~~~~vyLvNTGw~Gg~~g~G~Ri~l~~Tr~ii~ai~~g~l~~~~~~~~~~f~l~iP~~~~gv~~~~l~P~~~ 480 (509)
+|.++|++|+++||||||||+||+ |+|+||++++||+||++|++|++++++++.+|+|||.||++|+|||+++|+|+++
T Consensus 400 ~l~~~i~~~~~~i~lVNtgw~gg~-G~g~r~~~~~tr~ii~ail~g~l~~~~~~~~pif~l~iP~~~~~v~~~~l~p~~~ 478 (515)
T cd01919 400 HLLSMMQHPLPKIFLVNTGRKGKE-GKFKRPGFGETRAIIDAIFNGILDKAETKLTPIFNLYIPKALNLVGLGHLNPRNM 478 (515)
T ss_pred HHHHHHHHHCCCEEEEECCCCCCC-CCEEECCHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 999988861896899947740899-9676478579999999996596367782886545866876469987011898886
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5998999999999999999999875
Q gi|254780826|r 481 WNDVEAYDQKMRELLLMFENNAEKK 505 (509)
Q Consensus 481 w~d~~~Y~~~a~~L~~~F~~Nf~~~ 505 (509)
|+|+++|++++++|+++|++||+..
T Consensus 479 w~~~~~y~~~~~~l~~~f~~nF~~~ 503 (515)
T cd01919 479 MELFSQSKEFWDKLVEDFEKYFVDQ 503 (515)
T ss_pred HHCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 5470245999999999999999987
No 8
>pfam00821 PEPCK Phosphoenolpyruvate carboxykinase. Catalyses the formation of phosphoenolpyruvate by decarboxylation of oxaloacetate.
Probab=99.58 E-value=3e-11 Score=94.55 Aligned_cols=474 Identities=18% Similarity=0.183 Sum_probs=272.7
Q ss_pred CCCCCCEEECCCH-H---HHHHHHHHHCCCE-ECC---CCCEEEECCC-CCCCCCCCCEEECCCCCCCCCCCCC-CCCCC
Q ss_conf 8682204627988-9---9999999728838-826---8548985687-6568713223616886544345767-87588
Q gi|254780826|r 6 LEGSSRVYRNLST-S---RLYEESIRREKTI-LTC---DGALRALTGQ-HTGRSAFDKFIVRDSHTENDVFWEN-NKYIS 75 (509)
Q Consensus 6 i~~~~~v~~Nls~-~---eL~e~ai~~~eG~-lt~---~GAL~v~TG~-~TGRSPkDKfIV~d~~t~d~I~Wg~-N~~i~ 75 (509)
+....+|||.-.. + .|.+++++.++-+ |.. .+.....++. =..|.-...||+-++.. +=|. |+-++
T Consensus 9 l~~Pd~V~~cdGS~ee~~~l~~~~~~~G~~~~L~~~~~~n~~l~~s~p~DvARve~~T~I~s~~~~----dagp~nnw~~ 84 (586)
T pfam00821 9 LCQPDRVYICDGSEEEYDRLRKKAVEAGELIPLNEEKHPNCYLARSDPSDVARVESRTFICTPDKE----DAGPTNNWMD 84 (586)
T ss_pred HCCCCEEEECCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCEEECCCCCCCCEECCCEEEECCCHH----HCCCCCCCCC
T ss_conf 659986998489999999999999865986566767788837852780011020244599468723----1488656579
Q ss_pred HHHHHHH-HHHHHHHHCCCCEEEEEEEEEC-CHHHCCEEEEECCCCHHHHHHHHHCCCCCCCC-----CCCCCCCCEEEE
Q ss_conf 8999999-9999998627946997425517-83236402872287107789997512542111-----344456612764
Q gi|254780826|r 76 PADFDTL-KADMLDYIKDKDLFLQDLVACP-HTKNAISVCVVTQYAWHSLFIRNLLKHKEDLG-----AVPNMMSLQVVV 148 (509)
Q Consensus 76 ~e~F~~L-~~~v~~yl~~k~lyv~D~~~Ga-d~~~rl~vRvite~AwhaLF~~nmFirp~~~e-----~~~~~pd~tI~~ 148 (509)
++....- ...+..-+++|.+||.=-.+|- ...+...--=||..+|-.+-++-|...-.+.- ...|.+-..-.-
T Consensus 85 ~~e~~~~l~~lf~G~M~GRtMyVipfsmGP~gSp~s~~gVqiTDS~YVv~sm~imtR~g~~~l~~l~~~~~Fv~~vHSvG 164 (586)
T pfam00821 85 PEEMKAELRELFKGCMKGRTMYVIPFSMGPVGSPFSKIGVQLTDSPYVVHSMRIMTRMGFEVLDALGEDGEFVRCLHSVG 164 (586)
T ss_pred HHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 89999999987302146865799743217789852223136316634213278887624999997467887366662047
Q ss_pred CCCC--CCCCCCCCCC-CCCEEEEEHHCCEEEEECCHHHHHH---HHH-HHHHHHHHCCCCCEEEEECCCC--CCCCCC-
Q ss_conf 5887--6374224566-6616997722193566413678887---789-9999986241078799312453--477787-
Q gi|254780826|r 149 LPDF--SADPNRHGCC-SETIIAVDLTAGLILIGGTSYAGEI---KKS-VFTYLNHIFPERGIMPMHCSIN--MDKEKE- 218 (509)
Q Consensus 149 aP~~--~~~p~~~g~~-Se~~i~in~~~k~~lI~GT~YaGEi---KKs-iFtvmny~lp~~g~lpmHcsan--~~~~~~- 218 (509)
+|.- +.+.. --++ ....|....+++.+.=.|+.|+|-- ||. -+++..++.-++|=|.=|-=.- .+.+|+
T Consensus 165 ~pl~~g~~dv~-wpcnp~~~~I~h~pe~~~I~S~gSgYGGNaLlgKKcfALRiAs~~ar~EGWLAEHMlIlgvt~P~G~~ 243 (586)
T pfam00821 165 APLEPGQKDVN-WPCNPDKRYIVHFPEERTIWSFGSGYGGNALLGKKCFALRIASYMARDEGWLAEHMLILGITNPEGRK 243 (586)
T ss_pred CCCCCCCCCCC-CCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHEEEEEECCCCCCE
T ss_conf 76766776788-98887733899936757599834776764101102445667877501256165520145641799877
Q ss_pred -EEEEEEECCCCCCCCCCCC-CC-----CEEEECCCEE-E-CCCCC---CCCCCCCCCCCCCCCCCCCHHHHHHHHHCCH
Q ss_conf -0279983354311122247-88-----6133031102-1-56741---2345553211013583335135887530110
Q gi|254780826|r 219 -DVALFFGLSGTGKTTLSAS-VD-----RFLIGDDEHG-W-SKEGV---FNFEGGCYAKSINLSKETEPEIFSASCRFGT 286 (509)
Q Consensus 219 -d~alfFGLSGTGKTTLS~d-~~-----r~LigDDehg-W-~d~gv---fn~EgGcYaK~i~Ls~~~EP~I~~aa~~~~a 286 (509)
.++.- -.|+.|||.|.-- |. -..||||-.= | +++|. +|-|-|.+-=.-+-+...-|.++++ ++.++
T Consensus 244 ~yvaaA-FPSaCGKTnlAMl~p~~pgwkv~~vGDDIAwm~~~~dG~l~AiNPE~GfFGVapgt~~~tnP~am~~-l~~~~ 321 (586)
T pfam00821 244 KYIAAA-FPSACGKTNLAMLTPTLPGWKVECVGDDIAWMKFGEDGRLRAINPENGFFGVAPGTNEKTNPNAMAT-LPKNT 321 (586)
T ss_pred EEEEEE-CCCCCCCCCHHHCCCCCCCCEEEEECCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHH-HHCCC
T ss_conf 999842-5654465423220588888446894174688888899818987666564311689887889999997-53084
Q ss_pred HHCCCEECCCCCEECC-------------------CCCCC----CCEEEEEECCCCCCCCCC--CCCCCCCEEEEE-ECC
Q ss_conf 3124005789811114-------------------78867----670589860004310002--567887269996-026
Q gi|254780826|r 287 VLENVVVDECGIPNFK-------------------DSSVT----ENTRAAYPLNFIHNHAPQ--SIGKHPKHVIML-AAD 340 (509)
Q Consensus 287 ilENV~~d~~~~~df~-------------------d~s~T----eNtR~~yp~~~i~n~~~~--~~~~~p~~iifl-~~d 340 (509)
|.-||.+.++|.|-.. ..+-+ -|.|-+.|+...|+.... +-.+-|...|++ -+|
T Consensus 322 IFTNVa~t~DG~vwWeG~~~~~P~~~~dw~G~~w~p~~~~paaHPNsRFt~pa~qcp~i~p~wedP~GVpIsaiiFGGRr 401 (586)
T pfam00821 322 IFTNVALTDDGDVWWEGMEEEPPAHLIDWKGKPWTPESGEPAAHPNSRFTAPLAQCPNLDPDWEDPEGVPISAIIFGGRR 401 (586)
T ss_pred EEEEEEECCCCCEECCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCEEEEEEECCCC
T ss_conf 67656776899720167999999875037897568999997779863235646449876833348889678899975756
Q ss_pred CCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHCCCCCCCCHHHHHHHHHHHHH--HHCCEEEEEEC
Q ss_conf 7788760444185889999974232456662000125653121001050015683153899999998--81980999816
Q gi|254780826|r 341 AFGVLPPVAYLNPEKAVYYFLSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNILKDYIV--KYCVDCWLVNT 418 (509)
Q Consensus 341 ~~gvlPpvsklt~~qa~~~F~sGyT~k~agte~g~~ep~~tfs~cFg~PF~~~~p~~ya~ll~~~i~--~~~~~vyLvNT 418 (509)
+ ..+|+|..--.=+-.-+..+.-.|..+.+..| +..+..+-+-=.-||+.++...|-+--.+--+ +.-.++|-||=
T Consensus 402 ~-~t~PlV~ea~dW~HGV~~GAt~~SE~TAAa~g-~~g~~r~DPmAMlPF~gYn~gdY~~HWL~~g~~~~~~PkIF~VNW 479 (586)
T pfam00821 402 P-DTVPLVYEAFDWEHGVFIGASMESETTAAAEG-KVGVLRHDPMAMLPFCGYNMGDYLQHWLSMGKKGKKLPKIFHVNW 479 (586)
T ss_pred C-CCCCCEEECCCCCCCEEEEEEEHHHHHHHHHC-CCCEEEECCHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEE
T ss_conf 8-88884698244544457751103277787524-676177582020543478889999998775035578985899721
Q ss_pred ---CCCCC----CCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCHHHCC-HHHHC-----CCHH
Q ss_conf ---74688----76887320788999999999849602466066788774256207989965649-76625-----9989
Q gi|254780826|r 419 ---GWTAG----SYGEGYRMPLSVTRALLKAIFDNSIKSVPYRVDENFGFSVPLEVKGVDRKLLN-PRDSW-----NDVE 485 (509)
Q Consensus 419 ---Gw~Gg----~~g~G~Ri~l~~Tr~ii~ai~~g~l~~~~~~~~~~f~l~iP~~~~gv~~~~l~-P~~~w-----~d~~ 485 (509)
+=.|. .+|..+|+ |+.--.- .+|+.+-++. |+ |+ ||+.- .++.+-|+ ++..| -|++
T Consensus 480 Frkd~~GkFlWPGfgeN~RV-L~Wi~~R----~~G~~~A~eT---Pi-G~-vP~~~-dL~~~Gl~~~~~~~~~lf~v~~~ 548 (586)
T pfam00821 480 FRKDEDGKFLWPGFGENKRV-LKWILRR----VEGEVDAVET---PI-GY-IPKYE-DLNLLGLDLPEEDYEELFSIDKE 548 (586)
T ss_pred EEECCCCCEECCCCCCHHHH-HHHHHHH----HCCCCCCCCC---CC-CC-CCCCC-CCCCCCCCCCHHHHHHHHCCCHH
T ss_conf 68879998807888720799-9999998----6296562127---75-22-57811-03645687998999987096889
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999999999
Q gi|254780826|r 486 AYDQKMRELLLMFE 499 (509)
Q Consensus 486 ~Y~~~a~~L~~~F~ 499 (509)
.|.+++..+.+-|.
T Consensus 549 ~w~~e~~~i~~~~~ 562 (586)
T pfam00821 549 EWLQEVERIEKYYE 562 (586)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999999
No 9
>cd00819 PEPCK_GTP Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity, this model describes the GTP-dependent group.
Probab=99.56 E-value=9.6e-11 Score=91.18 Aligned_cols=482 Identities=16% Similarity=0.146 Sum_probs=285.3
Q ss_pred CCCCCCCEEECCCH----HHHHHHHHHHCCCE-ECC-CCCEEEECC-CCCCCCCCCCEEECCCCCCCCCCCCC-CCCCCH
Q ss_conf 78682204627988----99999999728838-826-854898568-76568713223616886544345767-875888
Q gi|254780826|r 5 DLEGSSRVYRNLST----SRLYEESIRREKTI-LTC-DGALRALTG-QHTGRSAFDKFIVRDSHTENDVFWEN-NKYISP 76 (509)
Q Consensus 5 Gi~~~~~v~~Nls~----~eL~e~ai~~~eG~-lt~-~GAL~v~TG-~~TGRSPkDKfIV~d~~t~d~I~Wg~-N~~i~~ 76 (509)
-|....+|||.-.. +.|.+.+++.+|-+ |.. -|.....+. .=..|.-...||+-+.. -+=|. |+-+++
T Consensus 10 ~L~~Pd~v~~cdGS~eE~~~l~~~~~~~g~~~~L~~~pn~~l~~sdp~DvARve~~TfI~t~~~----~dagp~nnw~~p 85 (579)
T cd00819 10 ELCQPDSVYICDGSEEEYDRLRDLMVEQGEEIRLNKYPNSYLARSDPSDVARVESRTFICSEDE----EDAGPTNNWMDP 85 (579)
T ss_pred HHCCCCEEEECCCCHHHHHHHHHHHHHCCCEECCCCCCCCEEEECCCCCCCEECCCEEEECCCC----CCCCCCCCCCCH
T ss_conf 8639987999489999999999999864874417899996787378010113115469945760----024874466798
Q ss_pred HHHHHHHHHH-HHHHCCCCEEEEEEEEEC-CHHHCCEEEEECCCCHHHHHHHHHCCCCCCCC--C--CCCCCCCEEEECC
Q ss_conf 9999999999-998627946997425517-83236402872287107789997512542111--3--4445661276458
Q gi|254780826|r 77 ADFDTLKADM-LDYIKDKDLFLQDLVACP-HTKNAISVCVVTQYAWHSLFIRNLLKHKEDLG--A--VPNMMSLQVVVLP 150 (509)
Q Consensus 77 e~F~~L~~~v-~~yl~~k~lyv~D~~~Ga-d~~~rl~vRvite~AwhaLF~~nmFirp~~~e--~--~~~~pd~tI~~aP 150 (509)
+.+..-.... ..-+++|.+||.=-.+|- ...+...--=||..+|-.+-++-|+..-...- + ..|.+-..-.-+|
T Consensus 86 ~e~~~~l~~lf~G~M~GRTMYVipfsMGP~gSp~s~~gVqiTDS~YVv~sm~imtR~g~~vl~~l~~~~Fv~~vHSvG~p 165 (579)
T cd00819 86 EEMKAELKELFKGCMRGRTMYVIPFSMGPLGSPISKIGVELTDSPYVVHSMRIMTRMGKAVLDALGEGEFVPCLHSVGAP 165 (579)
T ss_pred HHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 99999999763432369668996432078898523351262065776551899886009999861767705655215776
Q ss_pred CCCC-CCCCCCCCCCCEEEEEHHCCEEEEECCHHHHHH---HHHH-HHHHHHHCCCCCEEEEECCCCC--CCCCCEEEEE
Q ss_conf 8763-742245666616997722193566413678887---7899-9999862410787993124534--7778702799
Q gi|254780826|r 151 DFSA-DPNRHGCCSETIIAVDLTAGLILIGGTSYAGEI---KKSV-FTYLNHIFPERGIMPMHCSINM--DKEKEDVALF 223 (509)
Q Consensus 151 ~~~~-~p~~~g~~Se~~i~in~~~k~~lI~GT~YaGEi---KKsi-Ftvmny~lp~~g~lpmHcsan~--~~~~~d~alf 223 (509)
.-.- ...---.+....|+...+++.+.=.|+.|+|-- ||.. +++..++.-++|=|.-|--.-- +.++ .+.-|
T Consensus 166 ~~~~~~~~~~~~~~~~~I~h~p~~~~I~S~gsgYGGNaLlgKKc~aLRiAs~~a~~eGWLAEHMlIlgi~~P~g-~~~yv 244 (579)
T cd00819 166 LSAGQKDVWPCNPEKKYIVHFPEEREIWSFGSGYGGNALLGKKCFALRIASVMARDEGWLAEHMLILGVTNPEG-EKKYF 244 (579)
T ss_pred CCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHEEEECCCCC-CEEEE
T ss_conf 76777777899987269999667673999558868740332357888899887533252775423266427899-77999
Q ss_pred E--ECCCCCCCCCCCCC------CCEEEECCCEE--ECCCCC---CCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHCC
Q ss_conf 8--33543111222478------86133031102--156741---23455532110135833351358875301103124
Q gi|254780826|r 224 F--GLSGTGKTTLSASV------DRFLIGDDEHG--WSKEGV---FNFEGGCYAKSINLSKETEPEIFSASCRFGTVLEN 290 (509)
Q Consensus 224 F--GLSGTGKTTLS~d~------~r~LigDDehg--W~d~gv---fn~EgGcYaK~i~Ls~~~EP~I~~aa~~~~ailEN 290 (509)
- -.|+.|||+|.-=. +-..||||-.= +.++|. .|-|-|.+-=.-+-+...-|.++++ ++.++|.-|
T Consensus 245 aaAFPSaCGKTnlAMl~p~~pGwkv~~vGDDiawm~~~~dG~l~AiNPE~G~FGVapGt~~~tnP~am~~-l~~~~IFTN 323 (579)
T cd00819 245 AAAFPSACGKTNLAMLIPPLPGWKVETVGDDIAWMKFGEDGRLYAINPEAGFFGVAPGTNAKTNPNAMAT-LHKNTIFTN 323 (579)
T ss_pred EEECCCCCCCCCCEEECCCCCCCEEEEECCCEEEEEECCCCCEEEECCCCCCEEECCCCCCCCCHHHHHH-HHCCCEEEE
T ss_conf 8634644565421010478898545894174547788788967863664463123478887789899997-532744665
Q ss_pred CEECCCCCEECCC---------------------CCC----CCCEEEEEECCCCCCCCCC--CCCCCCCEEEEEECCCCC
Q ss_conf 0057898111147---------------------886----7670589860004310002--567887269996026778
Q gi|254780826|r 291 VVVDECGIPNFKD---------------------SSV----TENTRAAYPLNFIHNHAPQ--SIGKHPKHVIMLAADAFG 343 (509)
Q Consensus 291 V~~d~~~~~df~d---------------------~s~----TeNtR~~yp~~~i~n~~~~--~~~~~p~~iifl~~d~~g 343 (509)
|.+.++|.|-... +|- --|.|-+.|....|+.... +-.+-|...|++--++..
T Consensus 324 Va~t~DG~vwWeG~~~~~p~~~~~~~~~g~~~~~~~~~paaHPNsRFt~p~~qcp~i~p~wedP~GVpIsaiiFGGRr~~ 403 (579)
T cd00819 324 VALTEDGDVWWEGLTEEPPEHLTDWQGLGKRWTPGDGEPAAHPNSRFTAPASQCPNIDPEWENPEGVPIDAIIFGGRRPD 403 (579)
T ss_pred EEECCCCCEEECCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCEEEEEEECCCCCC
T ss_conf 67768996310578889998623336789878899999677888755762666986684334888856889997674688
Q ss_pred CCCHHHHCCHHHHHHHHHHHCCCCC-CCCCCCCCCCCCEEEHHHCCCCCCCCHHHHHHHHHH---HHHHHCCEEEEEE--
Q ss_conf 8760444185889999974232456-662000125653121001050015683153899999---9988198099981--
Q gi|254780826|r 344 VLPPVAYLNPEKAVYYFLSGYTAKV-AGTEKGVLKPEATFSACFGAPFMPRDPVQYGNILKD---YIVKYCVDCWLVN-- 417 (509)
Q Consensus 344 vlPpvsklt~~qa~~~F~sGyT~k~-agte~g~~ep~~tfs~cFg~PF~~~~p~~ya~ll~~---~i~~~~~~vyLvN-- 417 (509)
.+|+|..--.=+..-+..+.-.|.. |.++-.++ +..+-+-=.-||+.++...|-+--.+ ++...-.+++-||
T Consensus 404 t~PlV~ea~dW~hGV~~GA~m~SE~TAAa~g~~g--~~r~dPmAmlPF~gyn~gdY~~HWL~~g~~~~~~~PkIF~VNwF 481 (579)
T cd00819 404 TVPLVYEAFNWNHGVFIGASMGSETTAAAEGKVG--VVRRDPFAMLPFCGYNMGDYFRHWLSFGRKLGAKLPKIFGVNWF 481 (579)
T ss_pred CCCCEEEECCCCCCEEEEEEECCHHHHHHHCCCC--CEEECCHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEE
T ss_conf 8871799415777579866650024466515665--27858211065567798999999999861166889978996114
Q ss_pred -CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCC----CCCCCCHHHCCHHHHCCCHHHHHHHHH
Q ss_conf -674688768873207889999999998496024660667887742562----079899656497662599899999999
Q gi|254780826|r 418 -TGWTAGSYGEGYRMPLSVTRALLKAIFDNSIKSVPYRVDENFGFSVPL----EVKGVDRKLLNPRDSWNDVEAYDQKMR 492 (509)
Q Consensus 418 -TGw~Gg~~g~G~Ri~l~~Tr~ii~ai~~g~l~~~~~~~~~~f~l~iP~----~~~gv~~~~l~P~~~w~d~~~Y~~~a~ 492 (509)
.+=.|.-.=-|.+=..+.-.=|++- .+|+.+ -..-|+ |+ ||+ .+.|++.+.++. ..--|++.|.+.+.
T Consensus 482 rkd~~G~flWPGfgdN~rvL~Wi~~R-~~G~~~---A~eTPi-G~-vP~~~~ldl~gL~~~~~~~-l~~vd~~~w~~E~~ 554 (579)
T cd00819 482 RKDEDGKFLWPGFGENSRVLKWIFRR-VEGKAN---AIETPI-GY-IPKYGDLDLKGLGKSKLDF-LFSVDEDYWLQELI 554 (579)
T ss_pred EECCCCCCCCCCCCCHHHHHHHHHHH-HCCCCC---CEECCC-CC-CCCCCCCCCCCCCCCCHHH-HCCCCHHHHHHHHH
T ss_conf 47799998178854112789999998-539656---030786-22-4586665764568845476-55869899999999
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q gi|254780826|r 493 ELLLMFENN 501 (509)
Q Consensus 493 ~L~~~F~~N 501 (509)
++-+.|.+-
T Consensus 555 ~~~~~f~~~ 563 (579)
T cd00819 555 EIEEYLEKI 563 (579)
T ss_pred HHHHHHHHH
T ss_conf 999999985
No 10
>PRK04210 phosphoenolpyruvate carboxykinase; Provisional
Probab=99.42 E-value=2e-10 Score=89.06 Aligned_cols=473 Identities=18% Similarity=0.193 Sum_probs=270.6
Q ss_pred CCCCCCEEECCCH----HHHHHHHHHHCCCE-EC---CCCCEEEECCC-CCCCCCCCCEEECCCCCCCCCCCCC-CCCCC
Q ss_conf 8682204627988----99999999728838-82---68548985687-6568713223616886544345767-87588
Q gi|254780826|r 6 LEGSSRVYRNLST----SRLYEESIRREKTI-LT---CDGALRALTGQ-HTGRSAFDKFIVRDSHTENDVFWEN-NKYIS 75 (509)
Q Consensus 6 i~~~~~v~~Nls~----~eL~e~ai~~~eG~-lt---~~GAL~v~TG~-~TGRSPkDKfIV~d~~t~d~I~Wg~-N~~i~ 75 (509)
+....+|||.-.. +.|.+.+++.+|-+ |. ..+++...+.. =..|.-...||+-++. -+=|. |+-++
T Consensus 32 l~~Pd~V~~cdGS~ee~~~l~~~~~~~g~~~~L~~~~~~~~~~~rsdp~DvARve~rT~I~s~~~----~dagp~nnw~~ 107 (610)
T PRK04210 32 LTQPDRVVWCDGSEEEYDRLCDQMVEAGTLIRLNPEKHPNSFLARSDPSDVARVEDRTFICSPDE----EDAGPTNNWMD 107 (610)
T ss_pred HCCCCEEEECCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEEEECCCCCCCCEECCCEEEECCCH----HHCCCCCCCCC
T ss_conf 65998799848999999999999986698543577788762563288010314314448936872----32377656579
Q ss_pred HHHH-HHHHHHHHHHHCCCCEEEEEEEEEC-CHHHCCEEEEECCCCHHHHHHHHHCCCCCCCC-----CCCCCCCCEEEE
Q ss_conf 8999-9999999998627946997425517-83236402872287107789997512542111-----344456612764
Q gi|254780826|r 76 PADF-DTLKADMLDYIKDKDLFLQDLVACP-HTKNAISVCVVTQYAWHSLFIRNLLKHKEDLG-----AVPNMMSLQVVV 148 (509)
Q Consensus 76 ~e~F-~~L~~~v~~yl~~k~lyv~D~~~Ga-d~~~rl~vRvite~AwhaLF~~nmFirp~~~e-----~~~~~pd~tI~~ 148 (509)
++.. ..|.+.+..-+++|.+||.=-.+|- ...+...--=||..+|-.+-++-|...-.+.- ...|.+-..-.-
T Consensus 108 p~e~~~~l~~lf~G~M~GRTMyVipfsMGP~gSp~s~~gVqiTDS~YVv~sm~imtR~g~~~l~~l~~~~~Fv~~vHSvG 187 (610)
T PRK04210 108 PAEMRAELRGLFRGCMRGRTMYVVPFSMGPLGSPIAHIGVEITDSPYVVVSMRIMTRMGKAVLDVLGTDGEFVPCVHSVG 187 (610)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 89999999987403146865799643117789852223136316634213278887725999997456887356651157
Q ss_pred CCCC--CCCCCCCCCCCCCEEEEEH-HCCEEEEECCHHHHHH----HHHHHHHHHHHCCCCCEEEEECCCC--CCCCCCE
Q ss_conf 5887--6374224566661699772-2193566413678887----7899999986241078799312453--4777870
Q gi|254780826|r 149 LPDF--SADPNRHGCCSETIIAVDL-TAGLILIGGTSYAGEI----KKSVFTYLNHIFPERGIMPMHCSIN--MDKEKED 219 (509)
Q Consensus 149 aP~~--~~~p~~~g~~Se~~i~in~-~~k~~lI~GT~YaGEi----KKsiFtvmny~lp~~g~lpmHcsan--~~~~~~d 219 (509)
+|.- +.+.. --++ +.-++++| +.+.+.=.|+.|+|-- |+=-|++..++.-++|-|.=|-=.- .+.+| .
T Consensus 188 ~pl~~~~~dv~-wpc~-~~r~i~hfpe~r~I~S~gSgYGGNaLLGKKc~ALRias~~ar~EGWLAEHMlIlgv~~P~G-~ 264 (610)
T PRK04210 188 APLEPGQKDVP-WPCN-KTKYIVHFPEEREIWSFGSGYGGNALLGKKCLALRIASVMARDEGWLAEHMLILGVTSPEG-R 264 (610)
T ss_pred CCCCCCCCCCC-CCCC-CCEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHEEEECCCCC-C
T ss_conf 77766666678-9988-4359997477666998447767620221134555677776564230665311255328999-7
Q ss_pred EEEEE--ECCCCCCCCCCC-CCC-----CEEEECCCEEEC---CCCC---CCCCCCCCCCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 27998--335431112224-788-----613303110215---6741---234555321101358333513588753011
Q gi|254780826|r 220 VALFF--GLSGTGKTTLSA-SVD-----RFLIGDDEHGWS---KEGV---FNFEGGCYAKSINLSKETEPEIFSASCRFG 285 (509)
Q Consensus 220 ~alfF--GLSGTGKTTLS~-d~~-----r~LigDDehgW~---d~gv---fn~EgGcYaK~i~Ls~~~EP~I~~aa~~~~ 285 (509)
+.-|- -.|+.|||.|.- -|. -..||||-. |- ++|. +|-|-|.+-=.-+-+...-|.++.+..+.+
T Consensus 265 ~~yvaaAFPSaCGKTnlAMl~p~~pgwkv~~vGDDIA-wm~~~~dG~l~AiNPE~GfFGVapGt~~~tnP~am~~l~~~n 343 (610)
T PRK04210 265 KTYVAAAFPSACGKTNLAMLIPPFPGWKVETIGDDIA-WIKPGEDGRLYAINPEAGFFGVAPGTNEKTNPNAMATLHKGN 343 (610)
T ss_pred EEEEEEECCCCCCCCCHHHHCCCCCCCEEEEECCCEE-EEEECCCCCEEEECCCCCCCEECCCCCCCCCHHHHHHHCCCC
T ss_conf 7999742565446532544068888845799417468-888889894888766656301367888888989999736898
Q ss_pred HHHCCCEECCCCCE-------------------ECCCCCCC------CCEEEEEECCCCCCCCCC--CCCCCCCEEEEEE
Q ss_conf 03124005789811-------------------11478867------670589860004310002--5678872699960
Q gi|254780826|r 286 TVLENVVVDECGIP-------------------NFKDSSVT------ENTRAAYPLNFIHNHAPQ--SIGKHPKHVIMLA 338 (509)
Q Consensus 286 ailENV~~d~~~~~-------------------df~d~s~T------eNtR~~yp~~~i~n~~~~--~~~~~p~~iifl~ 338 (509)
+|.-||.+.++|.| ++...|-+ -|.|-+.|+...|+..+. +-.+-|...|++-
T Consensus 344 ~IFTNValt~dG~vwWeG~~~~~P~~~~dw~G~~w~p~~~~~~paAHPNsRFT~pa~qcp~i~p~wedP~GVpIsAiiFG 423 (610)
T PRK04210 344 VIFTNVALTDDGDVWWEGMTEEPPAHLIDWQGNDWTPESGEGIPAAHPNARFTVPASQCPNLDPEWEDPAGVPISAIIFG 423 (610)
T ss_pred EEEEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCEEEEEEEC
T ss_conf 06876658699975407789999976512679703887788587779864324546448877833348889678899976
Q ss_pred CCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHCCCCCCCCHHHHHHHHHHHH--HHHCCEEEEE
Q ss_conf 26778876044418588999997423245666200012565312100105001568315389999999--8819809998
Q gi|254780826|r 339 ADAFGVLPPVAYLNPEKAVYYFLSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNILKDYI--VKYCVDCWLV 416 (509)
Q Consensus 339 ~d~~gvlPpvsklt~~qa~~~F~sGyT~k~agte~g~~ep~~tfs~cFg~PF~~~~p~~ya~ll~~~i--~~~~~~vyLv 416 (509)
-++...+|+|..--.=+-.-+..+.-.|..+.+..|. .-+..+-+-=.-||+.++...|-+--.+-- .+.-.++|-|
T Consensus 424 GRr~~t~PlV~ea~dW~HGV~~GAt~~SE~TAAa~g~-~G~~rrDPmAMlPF~gYn~gdY~~HWL~~g~~~~~~PkIF~V 502 (610)
T PRK04210 424 GRRSDTVPLVTEAFDWVHGVYMGATMGSETTAAAVGK-VGVVRRDPMAMLPFCGYNMGDYFQHWLEFGKAGSKLPKIFGV 502 (610)
T ss_pred CCCCCCCCCEEECCCCCCCEEEEEEHHHHHHHHHHCC-CCCEEECCHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEE
T ss_conf 7568888846982445444577411043787986346-673663722315555779899999998752455789968996
Q ss_pred EC---CCCCC----CCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCC----CCCCCC--HHHCCHHHHCCC
Q ss_conf 16---74688----768873207889999999998496024660667887742562----079899--656497662599
Q gi|254780826|r 417 NT---GWTAG----SYGEGYRMPLSVTRALLKAIFDNSIKSVPYRVDENFGFSVPL----EVKGVD--RKLLNPRDSWND 483 (509)
Q Consensus 417 NT---Gw~Gg----~~g~G~Ri~l~~Tr~ii~ai~~g~l~~~~~~~~~~f~l~iP~----~~~gv~--~~~l~P~~~w~d 483 (509)
|= +=.|. .+|..+|+ |+.- ++ -.+|+.+.+ .-|+ |+ +|+ .+.|.+ .+.++ +..=-|
T Consensus 503 NWFrkd~~GkFlWPGfgeN~RV-L~Wi---~~-R~~G~~~A~---eTPi-G~-~P~~~dL~~~Gld~~~e~~~-~l~~vd 571 (610)
T PRK04210 503 NWFRKDEDGRFLWPGFGENMRV-LKWI---VD-RVEGRADAV---ETPI-GY-LPRYEDLDLLGLDYSREDYE-KLFSVD 571 (610)
T ss_pred EEEEECCCCCCCCCCCCCCHHH-HHHH---HH-HHCCCCCCE---ECCC-CC-CCCCCCCCCCCCCCCHHHHH-HHHCCC
T ss_conf 1048879998878887620699-9999---99-863965611---0775-13-57812257668989989999-871968
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 899999999999999
Q gi|254780826|r 484 VEAYDQKMRELLLMF 498 (509)
Q Consensus 484 ~~~Y~~~a~~L~~~F 498 (509)
+++|.+++....+.|
T Consensus 572 ~~~w~~e~~~~~~~~ 586 (610)
T PRK04210 572 VDEWLAELELIEELF 586 (610)
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 899999999999999
No 11
>COG1274 PckA Phosphoenolpyruvate carboxykinase (GTP) [Energy production and conversion]
Probab=99.00 E-value=4.3e-07 Score=67.00 Aligned_cols=386 Identities=19% Similarity=0.190 Sum_probs=228.1
Q ss_pred HHHHHHHHHHCCCE-EC---CCCCEEEECC-CCCCCCCCCCEEECCCCCCCCCCCCC-CCCCCHHHH-HHHHHHHHHHHC
Q ss_conf 99999999728838-82---6854898568-76568713223616886544345767-875888999-999999999862
Q gi|254780826|r 19 SRLYEESIRREKTI-LT---CDGALRALTG-QHTGRSAFDKFIVRDSHTENDVFWEN-NKYISPADF-DTLKADMLDYIK 91 (509)
Q Consensus 19 ~eL~e~ai~~~eG~-lt---~~GAL~v~TG-~~TGRSPkDKfIV~d~~t~d~I~Wg~-N~~i~~e~F-~~L~~~v~~yl~ 91 (509)
+.|.+.+++.++-+ |- ..++.++.+- ---.|.-.+.||.-. +..+=|. |.-++++.- ..+.+-...-+.
T Consensus 47 ~~l~~~~v~aG~~i~Ln~~~~pn~~l~~s~psDvAR~e~rTfI~s~----~~~~agPtnNw~~p~e~~~~m~~l~~G~Mr 122 (608)
T COG1274 47 DYLCWKMVEAGEEIKLNPEKHPNSYLARSNPSDVARVEERTFICSP----KEEDAGPTNNWMDPQEMRSEMNELFRGCMR 122 (608)
T ss_pred HHHHHHHHHCCCEEECCCCCCCCCEEEECCHHHHHHHHCCEEEECC----CCCCCCCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 9999999861864423744588846863685565443101466325----410137755778989999999999876514
Q ss_pred CCCEEEEEEEEEC-CHHHCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCC--C-EEEECCCCCCCCCCCC----CCC
Q ss_conf 7946997425517-832364028722871077899975125421113444566--1-2764588763742245----666
Q gi|254780826|r 92 DKDLFLQDLVACP-HTKNAISVCVVTQYAWHSLFIRNLLKHKEDLGAVPNMMS--L-QVVVLPDFSADPNRHG----CCS 163 (509)
Q Consensus 92 ~k~lyv~D~~~Ga-d~~~rl~vRvite~AwhaLF~~nmFirp~~~e~~~~~pd--~-tI~~aP~~~~~p~~~g----~~S 163 (509)
+|.+||.--.+|- +..+.+.--=+|..+|-.+-++.|-. --.+.++.--++ | .-++.-+-..+|-... ++.
T Consensus 123 GrtmyVvpf~mGP~~Spf~~~gVeiTDS~YVv~sm~imtR-mG~~vl~~lG~~g~Fvk~vHSvG~pL~pg~~dv~wPcn~ 201 (608)
T COG1274 123 GRTMYVVPFCMGPLNSPFTILGVELTDSPYVVHSMRIMTR-MGKEVLEKLGDDGNFVKCVHSVGKPLDPGQKDVAWPCNE 201 (608)
T ss_pred CCEEEEEEEEECCCCCCCCCCEEEEECCCEEEEEHHHHHH-HHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 8658998664178999765440485067306731668988-779999864888745664332688899876657677552
Q ss_pred CCEEEEEHHCCEEEEECCHHHHHH---HH-HHHHHHHHHCCCCCEEEEECCCCC--CCCCCE---EEEEEECCCCCCCCC
Q ss_conf 616997722193566413678887---78-999999862410787993124534--777870---279983354311122
Q gi|254780826|r 164 ETIIAVDLTAGLILIGGTSYAGEI---KK-SVFTYLNHIFPERGIMPMHCSINM--DKEKED---VALFFGLSGTGKTTL 234 (509)
Q Consensus 164 e~~i~in~~~k~~lI~GT~YaGEi---KK-siFtvmny~lp~~g~lpmHcsan~--~~~~~d---~alfFGLSGTGKTTL 234 (509)
--.|..-.+.+.+.=.||.|.|.. || --|++..++..++|-|+=|--.-- +.+|.. ++.| .|+.|||.|
T Consensus 202 ~k~i~hfped~~v~S~gsgYGGNall~KKC~ALRias~~A~~EGWLAEHMlil~v~~PeGk~~yftaAF--PSacGKTnl 279 (608)
T COG1274 202 TKYIRHFPEDREVWSFGSGYGGNALLGKKCLALRIASVMARDEGWLAEHMLILGVTNPEGKKYYFTAAF--PSACGKTNL 279 (608)
T ss_pred CCCEEECCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCEEEEEEEC--CCCCCCCCH
T ss_conf 110453688751676247866023444467877788887654105764310367317888458997435--654576551
Q ss_pred CCCC----C--CEEEECCCEEEC---CCCC---CCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHCCCEECCCCCEECC
Q ss_conf 2478----8--613303110215---6741---23455532110135833351358875301103124005789811114
Q gi|254780826|r 235 SASV----D--RFLIGDDEHGWS---KEGV---FNFEGGCYAKSINLSKETEPEIFSASCRFGTVLENVVVDECGIPNFK 302 (509)
Q Consensus 235 S~d~----~--r~LigDDehgW~---d~gv---fn~EgGcYaK~i~Ls~~~EP~I~~aa~~~~ailENV~~d~~~~~df~ 302 (509)
+-=+ . -.+||||- .|- .+|. .|-|-|.+.-.-+.++..-|.++.+...-++|.-||.+.++|.|=..
T Consensus 280 AMi~p~~pGWk~~~igDDI-awik~~~DG~lyAvNPE~GfFGVapGtn~~tnpnam~tl~~~n~IFTNV~lT~DGdvwWE 358 (608)
T COG1274 280 AMIPPTIPGWKAETIGDDI-AWIKFGKDGRLYAVNPEIGFFGVAPGTNEKTNPNAMATLHSGNTIFTNVALTDDGDVWWE 358 (608)
T ss_pred HHCCCCCCCCCEEECCCCE-EEEECCCCCCEEEECCCCCEEEECCCCCCCCCHHHHHHHCCCCEEEEEEEECCCCCCCCC
T ss_conf 1127788884013304632-455206777057635765347860377766780588774237667764456478972115
Q ss_pred CCCC------------------------CCCEEEEEECCCCCCCCCC--CCCCCCCE-EEEEECCCCCCCCHHHHC-CHH
Q ss_conf 7886------------------------7670589860004310002--56788726-999602677887604441-858
Q gi|254780826|r 303 DSSV------------------------TENTRAAYPLNFIHNHAPQ--SIGKHPKH-VIMLAADAFGVLPPVAYL-NPE 354 (509)
Q Consensus 303 d~s~------------------------TeNtR~~yp~~~i~n~~~~--~~~~~p~~-iifl~~d~~gvlPpvskl-t~~ 354 (509)
-... --|.|-..|++.-|+..+. +-.+-|.. |||=-+|+ .-+|+|-.- +=+
T Consensus 359 G~~~~~p~~l~dw~G~~w~~~~~g~paAHpNsRft~pl~~~P~ld~ew~dP~GVpi~aiiFGgRr~-~TvPlV~EA~~W~ 437 (608)
T COG1274 359 GLEGEPPEELIDWKGNDWRPGETGEPAAHPNSRFTVPLSQCPNLDPEWDDPEGVPIDAIIFGGRRP-TTVPLVTEAFDWE 437 (608)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCEEEEEEECCCCC-CCCCCEEEECCCC
T ss_conf 789999622316778726787789988898753355243397667344698885676799667677-6567245603555
Q ss_pred HHHHHHHHHCCCCC---CCCCCCCCCCCCEEEHHHCCCCCCCCHHHHHHH---HHHHHHHHCCEEEEEEC
Q ss_conf 89999974232456---662000125653121001050015683153899---99999881980999816
Q gi|254780826|r 355 KAVYYFLSGYTAKV---AGTEKGVLKPEATFSACFGAPFMPRDPVQYGNI---LKDYIVKYCVDCWLVNT 418 (509)
Q Consensus 355 qa~~~F~sGyT~k~---agte~g~~ep~~tfs~cFg~PF~~~~p~~ya~l---l~~~i~~~~~~vyLvNT 418 (509)
.-.+ .|-|.-+ |.+|-.++ +..+-+-=.-||+.+|-..|-.- |++|+++.-.+++.||=
T Consensus 438 HGV~---mGA~m~Se~TAA~~Gk~G--~lr~dPmAmLpF~gyn~~dYf~hwl~~G~k~~~k~PKIF~VNw 502 (608)
T COG1274 438 HGVF---MGATMGSETTAAAEGKVG--VLRRDPMAMLPFCGYNMGDYFRHWLEFGRKLRDKLPKIFGVNW 502 (608)
T ss_pred CCEE---EEECCCCCHHHHHHCCCC--CEECCCHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 5526---640324313445414546--1412850212445656899999999998764103885799976
No 12
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.62 E-value=4.1e-09 Score=80.34 Aligned_cols=62 Identities=27% Similarity=0.212 Sum_probs=50.6
Q ss_pred CEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCC---CCCEEEECCCEEECCC-----CCCCCCCCCCCC
Q ss_conf 87993124534777870279983354311122247---8861330311021567-----412345553211
Q gi|254780826|r 203 GIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSAS---VDRFLIGDDEHGWSKE-----GVFNFEGGCYAK 265 (509)
Q Consensus 203 g~lpmHcsan~~~~~~d~alfFGLSGTGKTTLS~d---~~r~LigDDehgW~d~-----gvfn~EgGcYaK 265 (509)
|..+|||....- .++...|+.|.||.|||.++.+ ..+.||+||.+-|... ..++.|.|||++
T Consensus 1 Gtts~HGvlvdv-~g~~Gvli~G~SgiGKSE~AleLi~rghrLVaDD~Vei~~~~~~~LvG~aPEllleir 70 (107)
T cd00820 1 GTTSLHGVLVDV-YGKVGVLITGDSGIGKTELALELIKRKHRLVGDDNVEIREDSKDELIGRNPELGLEIR 70 (107)
T ss_pred CCEEEEEEEEEE-ECCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEECCHHHEEEE
T ss_conf 924688899998-6766589986887878699999998488313165399998179989871846731236
No 13
>KOG3749 consensus
Probab=97.78 E-value=0.00061 Score=46.12 Aligned_cols=334 Identities=19% Similarity=0.225 Sum_probs=198.8
Q ss_pred CCCCCHHHHHHHHHHHHH-HHCCCCEEEEEEEEECC--HHHCCEEEEECCCCHHHHHHHHHCCCCCCC--CCC--CCCCC
Q ss_conf 875888999999999999-86279469974255178--323640287228710778999751254211--134--44566
Q gi|254780826|r 71 NKYISPADFDTLKADMLD-YIKDKDLFLQDLVACPH--TKNAISVCVVTQYAWHSLFIRNLLKHKEDL--GAV--PNMMS 143 (509)
Q Consensus 71 N~~i~~e~F~~L~~~v~~-yl~~k~lyv~D~~~Gad--~~~rl~vRvite~AwhaLF~~nmFirp~~~--e~~--~~~pd 143 (509)
-+-|+++.|+.-.++-.. -+++|..||.---+|-= |-..+.|. +|..|+--+-+|.|+.--+.. .+. .|.--
T Consensus 132 g~wms~~df~~~~~~rFpgcM~GRtMYVvPFSMGpvGsplskiGiq-lTDspyvV~smRimtR~g~~Vl~~l~~~dFvrC 210 (640)
T KOG3749 132 GHWMSEEDFDFAVDERFPGCMKGRTMYVVPFSMGPVGSPLSKIGIQ-LTDSPYVVLSMRIMTRMGTPVLDALGDGDFVRC 210 (640)
T ss_pred CCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCHHCEEE-ECCCCEEEEEHHHHHHHCCHHHHHHCCCCHHHH
T ss_conf 0337998987887631884226865899730247778850121367-407824664125787725099998625635666
Q ss_pred CEEEECCC---------CCCCCCCCCCCCCCEEEEEHHCCEEEEECCHHHHHH---HHHH-HHHHHHHCCCCCEEEEECC
Q ss_conf 12764588---------763742245666616997722193566413678887---7899-9999862410787993124
Q gi|254780826|r 144 LQVVVLPD---------FSADPNRHGCCSETIIAVDLTAGLILIGGTSYAGEI---KKSV-FTYLNHIFPERGIMPMHCS 210 (509)
Q Consensus 144 ~tI~~aP~---------~~~~p~~~g~~Se~~i~in~~~k~~lI~GT~YaGEi---KKsi-Ftvmny~lp~~g~lpmHcs 210 (509)
..-+-.|- ..++|+ .++|+.-.+++.+.--|+.|.|.- ||.+ +.+...+..++|-|.=|.-
T Consensus 211 lHSVG~Prp~~~~~v~~wpcnPe------~t~i~hkp~e~EI~s~GsgyGgnsllGkKcFalriaS~iak~eGWLAEhml 284 (640)
T KOG3749 211 LHSVGMPRPGQQKIVNPWPCNPE------RTLIAHKPDEREIWSFGSGYGGNSLLGKKCFALRIASRLAKDEGWLAEHML 284 (640)
T ss_pred HHHCCCCCCCCCCCCCCCCCCCC------EEEEEECCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 54138988755577889997852------447766486110454046778875434122212256554121113877678
Q ss_pred CC--CCCCCC-EEEEEEECCCCCCCCCCCC----CC--CEEEECCCEE--ECCCCC---CCCCCCCCCCCCCCCCCCCHH
Q ss_conf 53--477787-0279983354311122247----88--6133031102--156741---234555321101358333513
Q gi|254780826|r 211 IN--MDKEKE-DVALFFGLSGTGKTTLSAS----VD--RFLIGDDEHG--WSKEGV---FNFEGGCYAKSINLSKETEPE 276 (509)
Q Consensus 211 an--~~~~~~-d~alfFGLSGTGKTTLS~d----~~--r~LigDDehg--W~d~gv---fn~EgGcYaK~i~Ls~~~EP~ 276 (509)
.- ....++ ....---.|.+|||.|.-- |. -..+|||-.= |+.+|. +|=|.|.|--.-+-|...-|.
T Consensus 285 IlgITnP~g~k~~iaaafpSacgktnLam~~p~lPGwKV~cVgddiaWmkf~~dG~l~ainPEngffgvapgts~~tnP~ 364 (640)
T KOG3749 285 ILGITNPKGEKKYIAAAFPSACGKTNLAMMNPTLPGWKVECVGDDIAWMKFDADGRLRAINPENGFFGVAPGTSEKTNPN 364 (640)
T ss_pred HHCCCCCCCCCEEEEEECCCCCCCCHHHHCCCCCCCCEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCHH
T ss_conf 73325778871478885343125310865078889856899516325778657771887566546556588733345877
Q ss_pred HHHHHHHCCHHHCCCEECCCCCEECCC--------CCC-----------------CCCEEEEEECCCCCCCC---CCCCC
Q ss_conf 588753011031240057898111147--------886-----------------76705898600043100---02567
Q gi|254780826|r 277 IFSASCRFGTVLENVVVDECGIPNFKD--------SSV-----------------TENTRAAYPLNFIHNHA---PQSIG 328 (509)
Q Consensus 277 I~~aa~~~~ailENV~~d~~~~~df~d--------~s~-----------------TeNtR~~yp~~~i~n~~---~~~~~ 328 (509)
-.+ +++.++|.+||.-..+|.+-..- ..+ --|.|-+-|-..-|+.. .+..+
T Consensus 365 am~-t~~~ntIftnvaeTsDg~~~weg~e~~l~~~v~it~wlgk~w~~~~~~~aahPnsrf~~pa~Qcpii~p~Wesp~G 443 (640)
T KOG3749 365 AMA-TIQKNTIFTNVAETSDGGVYWEGIEKPLAPGVTITSWLGKPWSIGDGEPAAHPNSRFCAPASQCPIIDPAWESPEG 443 (640)
T ss_pred HHH-HHHHCCCEEEEEECCCCCEEECCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCC
T ss_conf 899-8874640232320257731312344334678432112577565788875779864446704209976823248788
Q ss_pred CCCCEEEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCCC-CCCCCCCEEEHHHCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 887269996026778876044418588999997423245666200-0125653121001050015683153899999998
Q gi|254780826|r 329 KHPKHVIMLAADAFGVLPPVAYLNPEKAVYYFLSGYTAKVAGTEK-GVLKPEATFSACFGAPFMPRDPVQYGNILKDYIV 407 (509)
Q Consensus 329 ~~p~~iifl~~d~~gvlPpvsklt~~qa~~~F~sGyT~k~agte~-g~~ep~~tfs~cFg~PF~~~~p~~ya~ll~~~i~ 407 (509)
-..+.|||=-+++.|| |-|-.-..=+-.. .-|-..++..|-. ..++-...-.+--..||+-+.=.+| |+.+|+
T Consensus 444 VPI~AiiFggRRp~gv-PLvyEa~~WehGV--fvga~mrseataaae~~gkiimhdP~amrpf~gynfgkY---l~HWL~ 517 (640)
T KOG3749 444 VPISAIIFGGRRPAGV-PLVYEANSWEHGV--FVGAAMRSEATAAAEHKGKIIMHDPFAMRPFFGYNFGKY---LEHWLS 517 (640)
T ss_pred CCEEEEEECCCCCCCC-CEEEECCCCCCCE--EEEEHHHHHHHHHHHHCCCEEEECCHHCCCCCCCCHHHH---HHHHHH
T ss_conf 7446788658777888-4488726532333--431012056667787448557547011362026768999---999997
Q ss_pred H--H----CCEEEEEEC
Q ss_conf 8--1----980999816
Q gi|254780826|r 408 K--Y----CVDCWLVNT 418 (509)
Q Consensus 408 ~--~----~~~vyLvNT 418 (509)
- + -.++|-||=
T Consensus 518 m~~~~~~~~PkIFhvNw 534 (640)
T KOG3749 518 MGQRPKAKLPKIFHVNW 534 (640)
T ss_pred HCCCCCCCCCCEEEEEE
T ss_conf 51477899982788663
No 14
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.46 E-value=0.005 Score=40.07 Aligned_cols=179 Identities=21% Similarity=0.361 Sum_probs=96.0
Q ss_pred EEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 93124534777870279983354311122247886133031102156741234555321101358333513588753011
Q gi|254780826|r 206 PMHCSINMDKEKEDVALFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSASCRFG 285 (509)
Q Consensus 206 pmHcsan~~~~~~d~alfFGLSGTGKTTLS~d~~r~LigDDehgW~d~gvfn~EgGcYaK~i~Ls~~~EP~I~~aa~~~~ 285 (509)
.-|-+.+..-..+.+..+.|-||||||||---=-..+-- +.|-.-+.|- ++..-.|.+.|.--.+.|
T Consensus 22 ~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P-------~~GeI~i~G~------~i~~ls~~~~~~ir~r~G 88 (263)
T COG1127 22 VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRP-------DKGEILIDGE------DIPQLSEEELYEIRKRMG 88 (263)
T ss_pred EEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC-------CCCEEEECCC------CHHCCCHHHHHHHHHHEE
T ss_conf 786273135507818999889886899999998565789-------8875998476------411049889999984351
Q ss_pred HHHCCCEECCCCCEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHCCHHHHHHHHHHHCC
Q ss_conf 03124005789811114788676705898600043100025678872699960267788760444185889999974232
Q gi|254780826|r 286 TVLENVVVDECGIPNFKDSSVTENTRAAYPLNFIHNHAPQSIGKHPKHVIMLAADAFGVLPPVAYLNPEKAVYYFLSGYT 365 (509)
Q Consensus 286 ailENV~~d~~~~~df~d~s~TeNtR~~yp~~~i~n~~~~~~~~~p~~iifl~~d~~gvlPpvsklt~~qa~~~F~sGyT 365 (509)
-+.+- -.-|++-++-||- ++|+.--..-.++. ...+..+--.+-|.-|-++.+=|.+ +||=.
T Consensus 89 vlFQ~-------gALFssltV~eNV--afplre~~~lp~~~----i~~lv~~KL~~VGL~~~~~~~~PsE-----LSGGM 150 (263)
T COG1127 89 VLFQQ-------GALFSSLTVFENV--AFPLREHTKLPESL----IRELVLMKLELVGLRGAAADLYPSE-----LSGGM 150 (263)
T ss_pred EEEEC-------CCCCCCCCHHHHH--HEEHHHHCCCCHHH----HHHHHHHHHHHCCCCHHHHHHCCHH-----HCCHH
T ss_conf 78605-------6123556545731--00068642599999----9999999998649985666639332-----04358
Q ss_pred CCCCCCCCC-CCCCCCEEEHHHCCCCCCCCHH---HHHHHHHHHHHHHCCEEEEEEC
Q ss_conf 456662000-1256531210010500156831---5389999999881980999816
Q gi|254780826|r 366 AKVAGTEKG-VLKPEATFSACFGAPFMPRDPV---QYGNILKDYIVKYCVDCWLVNT 418 (509)
Q Consensus 366 ~k~agte~g-~~ep~~tfs~cFg~PF~~~~p~---~ya~ll~~~i~~~~~~vyLvNT 418 (509)
.|+++--|- +.+|+-.| |-+||-=+.|. +..+|-.+.-+..+.+|++|--
T Consensus 151 ~KRvaLARAialdPell~---~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTH 204 (263)
T COG1127 151 RKRVALARAIALDPELLF---LDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTH 204 (263)
T ss_pred HHHHHHHHHHHCCCCEEE---ECCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEEC
T ss_conf 899999999864987798---559977888302779999999999863987999977
No 15
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter; InterPro: IPR005897 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family contains ABC-type bacteriocin transporter. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. Peptide bacteriocins are exported across the cytoplasmic membrane by a dedicated ATP-binding cassette (ABC) transporter. These ABC-transporters have an N-terminal peptidase domain that belong to MEROPS peptidase family C39 (clan CA); a central multi-pass transmembrane region and a C-terminal ABC transporter domain. These transporters have dual function: (i) they remove the N-terminal leader peptide from its bacteriocin precursor by cleavage at a Gly-Gly bond and (ii) transport the mature bacteriocin across the cytoplasmic membrane. This represents a novel strategy for secretion of bacterial proteins . Many bacteria are known to regulate diverse physiological processes through this system, such as bioluminescence, regulation of sporulation, virulence factor expression, antibiotics production, competence for genetic transformation, and activation of biofilm formation .; GO: 0008234 cysteine-type peptidase activity, 0019534 toxin transporter activity, 0006810 transport, 0016020 membrane.
Probab=95.12 E-value=0.0098 Score=38.11 Aligned_cols=69 Identities=30% Similarity=0.476 Sum_probs=48.4
Q ss_pred CCCCEEEEEEECCCCCCCCCCC------CCCCEEEECCCEE---ECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 7787027998335431112224------7886133031102---156741234555321101358333513588753011
Q gi|254780826|r 215 KEKEDVALFFGLSGTGKTTLSA------SVDRFLIGDDEHG---WSKEGVFNFEGGCYAKSINLSKETEPEIFSASCRFG 285 (509)
Q Consensus 215 ~~~~d~alfFGLSGTGKTTLS~------d~~r~LigDDehg---W~d~gvfn~EgGcYaK~i~Ls~~~EP~I~~aa~~~~ 285 (509)
+.+ ...-.-|.||+|||||.- +| |.+|| ....-+-|+.-+-==.-|++=| -||-||+ |
T Consensus 498 ~~n-~k~tiVGmSGSGKsTLaKLLV~FfeP------Q~~sG~I~Lng~~l~~iD~h~LRq~INYlP-QeP~IF~-----G 564 (710)
T TIGR01193 498 KKN-EKITIVGMSGSGKSTLAKLLVGFFEP------QAESGEILLNGISLKDIDRHELRQFINYLP-QEPYIFS-----G 564 (710)
T ss_pred ECC-CEEEEECCCCCCHHHHHHHHHCCCCC------CCCCCEEEECCCCHHHCCHHHHCCCCCCCC-CCCEEEC-----C
T ss_conf 078-54899736797489999875203589------988773652782445337344412335568-8784512-----3
Q ss_pred HHHCCCEECCC
Q ss_conf 03124005789
Q gi|254780826|r 286 TVLENVVVDEC 296 (509)
Q Consensus 286 ailENV~~d~~ 296 (509)
+||||--+-..
T Consensus 565 sILeNLLlGak 575 (710)
T TIGR01193 565 SILENLLLGAK 575 (710)
T ss_pred CHHHHHHHCCC
T ss_conf 17887650378
No 16
>TIGR02142 modC_ABC molybdate ABC transporter, ATP-binding protein; InterPro: IPR011868 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulphate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulphate transporter rather than by a specific molybdate transporter.; GO: 0005524 ATP binding, 0015098 molybdate ion transmembrane transporter activity, 0015689 molybdate ion transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=94.79 E-value=0.011 Score=37.89 Aligned_cols=71 Identities=27% Similarity=0.371 Sum_probs=38.8
Q ss_pred CCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCC-------CCCCEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 78799312453477787027998335431112224-------78861330311021567412345553211013583335
Q gi|254780826|r 202 RGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSA-------SVDRFLIGDDEHGWSKEGVFNFEGGCYAKSINLSKETE 274 (509)
Q Consensus 202 ~g~lpmHcsan~~~~~~d~alfFGLSGTGKTTLS~-------d~~r~LigDDehgW~d~gvfn~EgGcYaK~i~Ls~~~E 274 (509)
.|-..+-.+..+ .+..++..||-||.|||||=. -+.-.+.-|++ .|-|. .|-|.|++++
T Consensus 9 lG~f~Ld~~~~~--pg~GvtAlFG~SGsGKTtli~~iaGL~rp~~G~i~l~G~-~L~ds----------~k~i~Lp~ek- 74 (361)
T TIGR02142 9 LGDFELDVDLTL--PGQGVTALFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGE-VLFDS----------RKGIFLPPEK- 74 (361)
T ss_pred CCCEEEEEEEEC--CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCE-EEECC----------CCCCCCCCCC-
T ss_conf 455477776532--874068712589970789999987316756687998874-62056----------7766787201-
Q ss_pred HHHHHHHHHCCHHHCCCEE
Q ss_conf 1358875301103124005
Q gi|254780826|r 275 PEIFSASCRFGTVLENVVV 293 (509)
Q Consensus 275 P~I~~aa~~~~ailENV~~ 293 (509)
++.|-|.+.-.+
T Consensus 75 -------Rr~GYVFQeA~L 86 (361)
T TIGR02142 75 -------RRIGYVFQEARL 86 (361)
T ss_pred -------CEEEEEEECCEE
T ss_conf -------135368853550
No 17
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=94.72 E-value=0.13 Score=30.57 Aligned_cols=101 Identities=21% Similarity=0.155 Sum_probs=64.7
Q ss_pred CCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCC---CEEECCCCCCCCCCCC
Q ss_conf 1568315389999999881980999816746887688732078899999999984960246---6066788774256207
Q gi|254780826|r 391 MPRDPVQYGNILKDYIVKYCVDCWLVNTGWTAGSYGEGYRMPLSVTRALLKAIFDNSIKSV---PYRVDENFGFSVPLEV 467 (509)
Q Consensus 391 ~~~~p~~ya~ll~~~i~~~~~~vyLvNTGw~Gg~~g~G~Ri~l~~Tr~ii~ai~~g~l~~~---~~~~~~~f~l~iP~~~ 467 (509)
+|+.|.-+.=+=.+.+++-+..++||||| |=++-.+.++++|+-+|.|... -|+..|...=..=.+.
T Consensus 208 ~Plt~~T~hLin~~~l~~mk~ga~lVNta----------RG~~VDe~ALi~AL~~g~i~gaglDV~e~Ep~~~d~~l~~l 277 (324)
T COG1052 208 CPLTPETRHLINAEELAKMKPGAILVNTA----------RGGLVDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRL 277 (324)
T ss_pred CCCCHHHHHHCCHHHHHHCCCCEEEEECC----------CCCEECHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHC
T ss_conf 79983766532999997568976999648----------74216599999999809742267011678887788067636
Q ss_pred CCCCHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98996564976625998999999999999999999875
Q gi|254780826|r 468 KGVDRKLLNPRDSWNDVEAYDQKMRELLLMFENNAEKK 505 (509)
Q Consensus 468 ~gv~~~~l~P~~~w~d~~~Y~~~a~~L~~~F~~Nf~~~ 505 (509)
+..|.-++-|...|...++- ..++..-.+|-+.|
T Consensus 278 ~~~~~vvltPHia~at~ea~----~~m~~~~~~nl~~~ 311 (324)
T COG1052 278 DNFPNVVLTPHIASATEEAR----KAMAELALENLEAF 311 (324)
T ss_pred CCCCCEEEECCCCCCCHHHH----HHHHHHHHHHHHHH
T ss_conf 68998797044130209999----99999999999999
No 18
>PRK06436 glycerate dehydrogenase; Provisional
Probab=94.48 E-value=0.4 Score=27.46 Aligned_cols=101 Identities=12% Similarity=0.062 Sum_probs=64.3
Q ss_pred CCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 15683153899999998819809998167468876887320788999999999849602466066788774256207989
Q gi|254780826|r 391 MPRDPVQYGNILKDYIVKYCVDCWLVNTGWTAGSYGEGYRMPLSVTRALLKAIFDNSIKSVPYRVDENFGFSVPLEVKGV 470 (509)
Q Consensus 391 ~~~~p~~ya~ll~~~i~~~~~~vyLvNTGw~Gg~~g~G~Ri~l~~Tr~ii~ai~~g~l~~~~~~~~~~f~l~iP~~~~gv 470 (509)
+|+.+.-+.-+=.+.++.-+-.+|||||+ |=++=.+.++++|.-+|.+... -.+.|--+=+..-...
T Consensus 181 ~Plt~~T~~lI~~~~l~~MK~~a~lIN~a----------RG~iVde~aL~~aL~~g~i~ga---~lDV~~~EP~~~~~~l 247 (303)
T PRK06436 181 LPLTDETRGMINSKMLSLFRKGLAIINVA----------RADVVDKNDMLNFLRNHNDKYY---LSDVWWNEPIITETNP 247 (303)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEEEC----------CCCEECHHHHHHHHHHCCCEEE---EECCCCCCCCCCCCCC
T ss_conf 57865567776899998569997899927----------8654689999999981996599---9679999989987899
Q ss_pred CHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9656497662599899999999999999999987512
Q gi|254780826|r 471 DRKLLNPRDSWNDVEAYDQKMRELLLMFENNAEKKQI 507 (509)
Q Consensus 471 ~~~~l~P~~~w~d~~~Y~~~a~~L~~~F~~Nf~~~~~ 507 (509)
|.-++.|.-+|...+++.+ ..+.++.+|.+.|-.
T Consensus 248 ~NVilTPHiAg~~t~e~~~---~~~~~a~~Ni~~fl~ 281 (303)
T PRK06436 248 DNVILSPHVAGGMSGEIMQ---PAVALAFENIKNFFE 281 (303)
T ss_pred CCEEECCCCCCCCHHHHHH---HHHHHHHHHHHHHHC
T ss_conf 9889999466457999999---999999999999987
No 19
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.40 E-value=0.041 Score=34.01 Aligned_cols=26 Identities=35% Similarity=0.574 Sum_probs=20.2
Q ss_pred CCCCCCCCCEEEEEEECCCCCCCCCC
Q ss_conf 45347778702799833543111222
Q gi|254780826|r 210 SINMDKEKEDVALFFGLSGTGKTTLS 235 (509)
Q Consensus 210 san~~~~~~d~alfFGLSGTGKTTLS 235 (509)
-||....+.-++..||+||.|||||-
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTsli 41 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLI 41 (352)
T ss_pred EEECCCCCCCEEEEECCCCCCHHHHH
T ss_conf 87436877856999647888716189
No 20
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit; InterPro: IPR005892 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits this transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L. lactis functionally complements an Escherichia coli proU mutant. The complementing locus is similar to a opuA locus in Bacillus subtlis. This clarifies the differences in nomenclature.; GO: 0005524 ATP binding, 0015171 amino acid transmembrane transporter activity, 0006865 amino acid transport, 0016020 membrane.
Probab=94.38 E-value=0.016 Score=36.75 Aligned_cols=21 Identities=38% Similarity=0.694 Sum_probs=17.7
Q ss_pred CCCEEEEEEECCCCCCCCCCCC
Q ss_conf 7870279983354311122247
Q gi|254780826|r 216 EKEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 216 ~~~d~alfFGLSGTGKTTLS~d 237 (509)
+| ...+|.||||+||||+--=
T Consensus 18 ~G-Ei~vi~GlSGsGKsT~vrm 38 (372)
T TIGR01186 18 KG-EIFVIMGLSGSGKSTLVRM 38 (372)
T ss_pred CC-EEEEEECCCCCCHHHHHHH
T ss_conf 54-3899977899857899999
No 21
>TIGR02868 CydC ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; InterPro: IPR014223 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents CydC, a member of a heterodimeric ATP-binding cassette-type transporter (ABC transporter). It is involved in the export of glutathione from the cytoplasm to the periplasm and is required for the assembly of both cytochrome c and cytochrome bd , , .; GO: 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane.
Probab=94.01 E-value=0.024 Score=35.51 Aligned_cols=96 Identities=20% Similarity=0.199 Sum_probs=57.3
Q ss_pred CCCEEEEEEECCCCCCCCCCC------CCC-CEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHH
Q ss_conf 787027998335431112224------788-6133031102156741234555321101358333513588753011031
Q gi|254780826|r 216 EKEDVALFFGLSGTGKTTLSA------SVD-RFLIGDDEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSASCRFGTVL 288 (509)
Q Consensus 216 ~~~d~alfFGLSGTGKTTLS~------d~~-r~LigDDehgW~d~gvfn~EgGcYaK~i~Ls~~~EP~I~~aa~~~~ail 288 (509)
.| .-....|-||+|||||-. ||. -.+.-|+.+.|+ +.+.-=.|+|.+.++ +|=+|++ +|.
T Consensus 386 ~G-~r~Ai~G~SG~GKsTLL~~L~G~l~P~~G~vtl~G~~~~~------~~~~evrr~v~~~aQ-~aHlF~t-----tvr 452 (566)
T TIGR02868 386 PG-ERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSS------LSEDEVRRRVSVFAQ-DAHLFDT-----TVR 452 (566)
T ss_pred CC-CCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEECCCCHHH------CCCCHHEHHEEECCC-CCCCCCC-----CHH
T ss_conf 88-6089866887657899999984028999917877732432------573110000031278-8621105-----478
Q ss_pred CCCEECCCCCEEC----CCCCCCC---CEEEEEECCCCCCCCCCCC
Q ss_conf 2400578981111----4788676---7058986000431000256
Q gi|254780826|r 289 ENVVVDECGIPNF----KDSSVTE---NTRAAYPLNFIHNHAPQSI 327 (509)
Q Consensus 289 ENV~~d~~~~~df----~d~s~Te---NtR~~yp~~~i~n~~~~~~ 327 (509)
||+-+ ++||= +|..+.+ -.|-.-.++.+|.-.++.+
T Consensus 453 ~NLrl---arpdaaaGDtdeE~~~aL~~vgL~~~~~~LP~Gl~T~~ 495 (566)
T TIGR02868 453 ENLRL---ARPDAAAGDTDEELLAALERVGLADWLRALPDGLDTVL 495 (566)
T ss_pred HHHHH---CCCCCCCCCCHHHHHHHHHHHCCCCHHHHCCCCCCCCC
T ss_conf 78873---18888998888999999997158023863857678530
No 22
>PRK06487 glycerate dehydrogenase; Provisional
Probab=93.82 E-value=0.46 Score=27.05 Aligned_cols=99 Identities=19% Similarity=0.222 Sum_probs=65.4
Q ss_pred CCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEECCCCCCCC-----CC
Q ss_conf 1568315389999999881980999816746887688732078899999999984960246606678877425-----62
Q gi|254780826|r 391 MPRDPVQYGNILKDYIVKYCVDCWLVNTGWTAGSYGEGYRMPLSVTRALLKAIFDNSIKSVPYRVDENFGFSV-----PL 465 (509)
Q Consensus 391 ~~~~p~~ya~ll~~~i~~~~~~vyLvNTGw~Gg~~g~G~Ri~l~~Tr~ii~ai~~g~l~~~~~~~~~~f~l~i-----P~ 465 (509)
+|+.|.-+.-+=++.+++-+-.++||||| |=++=...++++|..+|.|..+ -.+.|--|- |.
T Consensus 205 ~Plt~~T~~li~~~~l~~Mk~~a~lIN~a----------RG~lVde~aL~~AL~~g~i~gA---alDV~~~EP~~~~~pl 271 (317)
T PRK06487 205 CPLTEHTRHLIGARELALMKPGALLINTA----------RGGLVDEQALADALRSGHLGGA---ATDVLSVEPPVNGNPL 271 (317)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCEEEEEC----------CCCCCCHHHHHHHHHHCCCEEE---EEECCCCCCCCCCCHH
T ss_conf 35761121157999998538997899706----------8654699999999984994189---9958999899999934
Q ss_pred CCCCCCHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 07989965649766259989999999999999999998751
Q gi|254780826|r 466 EVKGVDRKLLNPRDSWNDVEAYDQKMRELLLMFENNAEKKQ 506 (509)
Q Consensus 466 ~~~gv~~~~l~P~~~w~d~~~Y~~~a~~L~~~F~~Nf~~~~ 506 (509)
--...|.-++.|...|...+++.. ++.+..+|-+.|-
T Consensus 272 ~~~~~pNvilTPHia~~t~ea~~~----~~~~~~~ni~~fl 308 (317)
T PRK06487 272 LAPDIPRLIVTPHSAWGSREARQR----IVGQLAENARAFF 308 (317)
T ss_pred HHCCCCCEEECCCCCCCHHHHHHH----HHHHHHHHHHHHH
T ss_conf 537999899868535060999999----9999999999998
No 23
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family; InterPro: IPR014324 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the ATP-binding subunit DevA, found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The ABC transporter encoded by the devBCA operon is induced by nitrogen deficiency and is necessary for the formation of the laminated layer which envelops heterocysts , . It is thought to be involved in the export of either the heterocyst-specific glycolipids found in the laminated layer, or an enzyme essential for their formation..
Probab=93.54 E-value=0.029 Score=34.96 Aligned_cols=21 Identities=38% Similarity=0.634 Sum_probs=17.6
Q ss_pred CCCEEEEEEECCCCCCCCCCC
Q ss_conf 787027998335431112224
Q gi|254780826|r 216 EKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 216 ~~~d~alfFGLSGTGKTTLS~ 236 (509)
+.+.+.+.=|.||+|||||=+
T Consensus 29 ~~GEiViltGPSGSGKTTLLt 49 (220)
T TIGR02982 29 NPGEIVILTGPSGSGKTTLLT 49 (220)
T ss_pred CCCEEEEEECCCCCCHHHHHH
T ss_conf 176479843788984688999
No 24
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.46 E-value=0.026 Score=35.27 Aligned_cols=29 Identities=38% Similarity=0.658 Sum_probs=22.0
Q ss_pred EEEEECCCCCCCCCCCC-----CCCEEEECCCEE
Q ss_conf 79983354311122247-----886133031102
Q gi|254780826|r 221 ALFFGLSGTGKTTLSAS-----VDRFLIGDDEHG 249 (509)
Q Consensus 221 alfFGLSGTGKTTLS~d-----~~r~LigDDehg 249 (509)
.+..|+||+||||+... .-..+=|||+|-
T Consensus 2 iiv~GvsGsGKSTia~~La~~lg~~~i~~D~~h~ 35 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHP 35 (150)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEECCCCCCC
T ss_conf 8999189999999999999971995641543354
No 25
>PRK05541 adenylylsulfate kinase; Provisional
Probab=93.30 E-value=0.035 Score=34.48 Aligned_cols=24 Identities=33% Similarity=0.495 Sum_probs=19.1
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCC
Q ss_conf 787027998335431112224788
Q gi|254780826|r 216 EKEDVALFFGLSGTGKTTLSASVD 239 (509)
Q Consensus 216 ~~~d~alfFGLSGTGKTTLS~d~~ 239 (509)
.++-+.-|-||||+|||||+..=.
T Consensus 5 ~kg~viW~TGLsGSGKTTiA~~l~ 28 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALY 28 (176)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 886799978999998999999999
No 26
>PRK06932 glycerate dehydrogenase; Provisional
Probab=92.91 E-value=0.46 Score=27.02 Aligned_cols=98 Identities=21% Similarity=0.270 Sum_probs=62.7
Q ss_pred CCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEECCCCCCCC-----CC
Q ss_conf 1568315389999999881980999816746887688732078899999999984960246606678877425-----62
Q gi|254780826|r 391 MPRDPVQYGNILKDYIVKYCVDCWLVNTGWTAGSYGEGYRMPLSVTRALLKAIFDNSIKSVPYRVDENFGFSV-----PL 465 (509)
Q Consensus 391 ~~~~p~~ya~ll~~~i~~~~~~vyLvNTGw~Gg~~g~G~Ri~l~~Tr~ii~ai~~g~l~~~~~~~~~~f~l~i-----P~ 465 (509)
+|+.+.-..-+=.+.+++-+-.++||||+ |=++=.+.++++|.-+|.|..+ -.+.|--|- |.
T Consensus 205 ~Plt~eT~~li~~~~l~~MK~~a~lIN~a----------RG~iVde~aL~~AL~~g~I~gA---~lDV~~~EP~~~~~pl 271 (314)
T PRK06932 205 CPLTESTQNLINAETLALMKPTAFLINTG----------RGPLVDEQALVDALETGHIAGA---ALDVLVKEPPEKDNPL 271 (314)
T ss_pred ECCCCCCCCHHHHHHHHCCCCCCEEEECC----------CCCCCCHHHHHHHHHHCCCEEE---EECCCCCCCCCCCCHH
T ss_conf 11301023366699973578871999826----------7554499999999982990289---9727999999889845
Q ss_pred --CCCCCCHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf --0798996564976625998999999999999999999875
Q gi|254780826|r 466 --EVKGVDRKLLNPRDSWNDVEAYDQKMRELLLMFENNAEKK 505 (509)
Q Consensus 466 --~~~gv~~~~l~P~~~w~d~~~Y~~~a~~L~~~F~~Nf~~~ 505 (509)
..-..|.-++-|...|...+++...+... .+|-++|
T Consensus 272 ~~~~~~~~NvilTPHia~~T~ea~~~~~~~~----~~Ni~~f 309 (314)
T PRK06932 272 IQAAKTLPNLIITPHIAWASDSAVTTLVNKV----MQNIEEF 309 (314)
T ss_pred HHHHCCCCCEEECCCCCCCHHHHHHHHHHHH----HHHHHHH
T ss_conf 6763679989987832225799999999999----9999999
No 27
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=92.87 E-value=0.44 Score=27.14 Aligned_cols=97 Identities=18% Similarity=0.183 Sum_probs=60.8
Q ss_pred CCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEECCCCCCCC-CC----
Q ss_conf 1568315389999999881980999816746887688732078899999999984960246606678877425-62----
Q gi|254780826|r 391 MPRDPVQYGNILKDYIVKYCVDCWLVNTGWTAGSYGEGYRMPLSVTRALLKAIFDNSIKSVPYRVDENFGFSV-PL---- 465 (509)
Q Consensus 391 ~~~~p~~ya~ll~~~i~~~~~~vyLvNTGw~Gg~~g~G~Ri~l~~Tr~ii~ai~~g~l~~~~~~~~~~f~l~i-P~---- 465 (509)
+|+.|.-+.-+=.+.++.-+..++||||+ |=++=.+.++++|.-+|.|. .- .+.|--+= |.
T Consensus 204 ~Plt~~T~~li~~~~l~~Mk~~a~lIN~a----------RG~iVde~aL~~aL~~~~ig---aa-lDV~~~EP~~~~~pl 269 (311)
T PRK08410 204 APLNEKTKNLINYEELKLLKDGAILINVG----------RGGIVNEKDLAKALDEKDIY---AA-LDVLEIEPMEKNHPL 269 (311)
T ss_pred CCCCCCCCCHHHHHHHHHCCCCCEEEEEC----------CCCCCCHHHHHHHHHCCCCE---EE-EECCCCCCCCCCCHH
T ss_conf 35762223401289996304575599925----------74225999999999759958---99-989999999999845
Q ss_pred -CCCCCCHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -0798996564976625998999999999999999999875
Q gi|254780826|r 466 -EVKGVDRKLLNPRDSWNDVEAYDQKMRELLLMFENNAEKK 505 (509)
Q Consensus 466 -~~~gv~~~~l~P~~~w~d~~~Y~~~a~~L~~~F~~Nf~~~ 505 (509)
++++-|.-++.|.-.|...+++.... .+..+|-..|
T Consensus 270 ~~l~~~~nvi~TPHia~~T~ea~~~~~----~~~~~ni~~f 306 (311)
T PRK08410 270 LNIKNKEKLLITPHIAWASKEARKTLV----EKVKENIKDF 306 (311)
T ss_pred HHCCCCCCEEEECCCCCCHHHHHHHHH----HHHHHHHHHH
T ss_conf 546789968990843217799999999----9999999999
No 28
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.72 E-value=0.067 Score=32.59 Aligned_cols=42 Identities=31% Similarity=0.619 Sum_probs=27.0
Q ss_pred HCCCCC-EEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCC
Q ss_conf 241078-7993124534777870279983354311122247886
Q gi|254780826|r 198 IFPERG-IMPMHCSINMDKEKEDVALFFGLSGTGKTTLSASVDR 240 (509)
Q Consensus 198 ~lp~~g-~lpmHcsan~~~~~~d~alfFGLSGTGKTTLS~d~~r 240 (509)
++.+.| ++.. +.++..-..+...+..||||+||+||--.-+|
T Consensus 34 i~~~tg~vvGv-~~~sl~v~~GeIfViMGLSGSGKSTLvR~~Nr 76 (386)
T COG4175 34 ILKKTGLVVGV-NDASLDVEEGEIFVIMGLSGSGKSTLVRLLNR 76 (386)
T ss_pred HHHHHCCEEEE-CCCEEEECCCEEEEEEECCCCCHHHHHHHHHC
T ss_conf 99861947764-24204545870899993587878899999735
No 29
>PRK03846 adenylylsulfate kinase; Provisional
Probab=92.22 E-value=0.061 Score=32.85 Aligned_cols=23 Identities=39% Similarity=0.634 Sum_probs=18.5
Q ss_pred CCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 777870279983354311122247
Q gi|254780826|r 214 DKEKEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 214 ~~~~~d~alfFGLSGTGKTTLS~d 237 (509)
++. +-+.-|-||||+|||||+..
T Consensus 21 ~~k-g~viWlTGLSGSGKTTlA~~ 43 (198)
T PRK03846 21 GHK-GVVLWFTGLSGSGKSTVAGA 43 (198)
T ss_pred CCC-CEEEEEECCCCCCHHHHHHH
T ss_conf 899-86999879999988999999
No 30
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=92.20 E-value=0.04 Score=34.09 Aligned_cols=28 Identities=39% Similarity=0.487 Sum_probs=21.4
Q ss_pred CCCCCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 2453477787027998335431112224
Q gi|254780826|r 209 CSINMDKEKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 209 csan~~~~~~d~alfFGLSGTGKTTLS~ 236 (509)
++|+.-.+-=|..||||+.|.|||||..
T Consensus 43 ~AAk~r~e~lDHvLl~GPPGlGKTTLA~ 70 (332)
T COG2255 43 KAAKKRGEALDHVLLFGPPGLGKTTLAH 70 (332)
T ss_pred HHHHHCCCCCCEEEEECCCCCCHHHHHH
T ss_conf 9998449876747864799876888999
No 31
>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=92.16 E-value=0.051 Score=33.35 Aligned_cols=18 Identities=50% Similarity=0.805 Sum_probs=15.4
Q ss_pred EEEEEEECCCCCCCCCCC
Q ss_conf 027998335431112224
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~ 236 (509)
..+||+|..|||||||.-
T Consensus 51 ~h~lf~GPPG~GKTTlAr 68 (234)
T pfam05496 51 DHVLLYGPPGLGKTTLAN 68 (234)
T ss_pred CEEEEECCCCCCHHHHHH
T ss_conf 627887899998889999
No 32
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=91.66 E-value=0.026 Score=35.34 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=17.6
Q ss_pred CCCCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 453477787027998335431112224
Q gi|254780826|r 210 SINMDKEKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 210 san~~~~~~d~alfFGLSGTGKTTLS~ 236 (509)
|-.+. .| .+..+-|.||+|||||..
T Consensus 370 s~~i~-~G-e~vaIVG~SGsGKSTl~~ 394 (588)
T PRK11174 370 NFTLP-AG-QRVALVGPSGAGKTSLLN 394 (588)
T ss_pred EEEEC-CC-CEEEEECCCCCCHHHHHH
T ss_conf 69974-99-789998999864999999
No 33
>PRK08605 D-lactate dehydrogenase; Validated
Probab=91.47 E-value=0.85 Score=25.26 Aligned_cols=100 Identities=20% Similarity=0.203 Sum_probs=67.2
Q ss_pred CCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEECCCCCCCC---CC--
Q ss_conf 1568315389999999881980999816746887688732078899999999984960246606678877425---62--
Q gi|254780826|r 391 MPRDPVQYGNILKDYIVKYCVDCWLVNTGWTAGSYGEGYRMPLSVTRALLKAIFDNSIKSVPYRVDENFGFSV---PL-- 465 (509)
Q Consensus 391 ~~~~p~~ya~ll~~~i~~~~~~vyLvNTGw~Gg~~g~G~Ri~l~~Tr~ii~ai~~g~l~~~~~~~~~~f~l~i---P~-- 465 (509)
+|+.+.-..-+=.+.+++-+-..+||||+ |=.+=.+-++++|.-+|.|..+ -.+.|--|- |.
T Consensus 208 ~Plt~~T~~lI~~~~l~~MK~~a~lINta----------RG~iVde~aL~~AL~~g~I~gA---alDVfe~Epp~~p~~~ 274 (332)
T PRK08605 208 MPATKYNTYLFNADLFKHFKKGAVFVNCA----------RGSLVDTKALLDALDNGLIKGA---ALDTYEFERPLFPSDQ 274 (332)
T ss_pred CCCCHHHHHHCCHHHHHHCCCCCEEEEEC----------CCCCCCHHHHHHHHHCCCEEEE---EEECCCCCCCCCCCCC
T ss_conf 36883550121899997224796899906----------8653389999999981981289---9853777888786543
Q ss_pred -----------CCCCCCHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf -----------07989965649766259989999999999999999998
Q gi|254780826|r 466 -----------EVKGVDRKLLNPRDSWNDVEAYDQKMRELLLMFENNAE 503 (509)
Q Consensus 466 -----------~~~gv~~~~l~P~~~w~d~~~Y~~~a~~L~~~F~~Nf~ 503 (509)
.+-..|.-++.|.-.|.-.++....+...++...+=|+
T Consensus 275 ~~~~~~~~~~~~L~~~~NvilTPHig~~T~ea~~~m~~~a~~ni~~~l~ 323 (332)
T PRK08605 275 RGKTINDPLLESLINREDVILTPHIAFYTDAAVKNLIVDALDATVEVLQ 323 (332)
T ss_pred CCCCCCCHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 3345677778987069999988921004899999999999999999982
No 34
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=91.42 E-value=0.22 Score=29.18 Aligned_cols=22 Identities=5% Similarity=0.191 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHCCEEEEEE
Q ss_conf 1538999999988198099981
Q gi|254780826|r 396 VQYGNILKDYIVKYCVDCWLVN 417 (509)
Q Consensus 396 ~~ya~ll~~~i~~~~~~vyLvN 417 (509)
+.-|..|..++.+.+.++|++-
T Consensus 457 stiA~~le~~L~~~g~~~~~LD 478 (613)
T PRK05506 457 STIANLVERRLHALGRHTYVLD 478 (613)
T ss_pred HHHHHHHHHHHHHCCCCEEEEC
T ss_conf 7999999999997799879988
No 35
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=91.01 E-value=0.033 Score=34.65 Aligned_cols=73 Identities=22% Similarity=0.378 Sum_probs=39.8
Q ss_pred CEEEEEEECCCCCCCCCCC------CC--CCEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHC
Q ss_conf 7027998335431112224------78--861330311021567412345553211013583335135887530110312
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSA------SV--DRFLIGDDEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSASCRFGTVLE 289 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~------d~--~r~LigDDehgW~d~gvfn~EgGcYaK~i~Ls~~~EP~I~~aa~~~~ailE 289 (509)
+....+-|.||+|||||-. +| .+.+|++ .-+-.+.-..+-+.|.+-+ -||.+|+ +++.|
T Consensus 341 Ge~vaIVG~SGsGKSTLl~LL~g~y~p~~G~I~idg-------~di~~i~~~~lR~~I~~V~-Q~~~LF~-----~TI~e 407 (569)
T PRK10789 341 GQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHD-------IPLTKLQLDSWRSRLAVVS-QTPFLFS-----DTVAN 407 (569)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEC-------EECCCCCHHHHHHCCCCCC-CCCCCCC-----CCHHH
T ss_conf 978998799999879999999977642678746501-------0134257688863147658-8750256-----62999
Q ss_pred CCEECCCCCEECCCCCC
Q ss_conf 40057898111147886
Q gi|254780826|r 290 NVVVDECGIPNFKDSSV 306 (509)
Q Consensus 290 NV~~d~~~~~df~d~s~ 306 (509)
|..+ |+|+.+|..+
T Consensus 408 NI~l---g~~~~~~eei 421 (569)
T PRK10789 408 NIAL---GRPDATQQEI 421 (569)
T ss_pred HHHC---CCCCCCHHHH
T ss_conf 9865---7977654589
No 36
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN; InterPro: IPR013462 The GvpN protein is associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy , . It belongs to a larger family of ATPases .; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0031412 gas vesicle organization and biogenesis, 0031411 gas vesicle.
Probab=90.92 E-value=0.061 Score=32.84 Aligned_cols=73 Identities=32% Similarity=0.251 Sum_probs=44.4
Q ss_pred CEEEEEEECCCCCCCCCCCC----CCC---EEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHCC
Q ss_conf 70279983354311122247----886---13303110215674123455532110135833351358875301103124
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS----VDR---FLIGDDEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSASCRFGTVLEN 290 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d----~~r---~LigDDehgW~d~gvfn~EgGcYaK~i~Ls~~~EP~I~~aa~~~~ailEN 290 (509)
+-..=|-|..|||||||.-+ -+| .+-||+|..-+| -|=.+-|--+- .-.+--+-|
T Consensus 21 G~PvHl~GPaG~GKT~LA~hvA~~r~RPV~l~~Gd~eL~~~D-LvG~~~g~~~~-----------------kv~Dqfihn 82 (265)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVVLINGDAELTTSD-LVGSYAGYTRK-----------------KVVDQFIHN 82 (265)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCC-CCCCCCCCEEE-----------------EEEECCEEE
T ss_conf 886674478885568999999973689689986582326544-23154675222-----------------232012111
Q ss_pred CEECCCC-CEECCCCCCCC
Q ss_conf 0057898-11114788676
Q gi|254780826|r 291 VVVDECG-IPNFKDSSVTE 308 (509)
Q Consensus 291 V~~d~~~-~~df~d~s~Te 308 (509)
|+-.++. +-...|..||.
T Consensus 83 V~K~~d~~~~~W~D~rLt~ 101 (265)
T TIGR02640 83 VVKLEDIVRQNWVDNRLTL 101 (265)
T ss_pred EECCCCCCCCCCCCCHHHH
T ss_conf 3425122002667835789
No 37
>COG1493 HprK Serine kinase of the HPr protein, regulates carbohydrate metabolism [Signal transduction mechanisms]
Probab=90.78 E-value=0.23 Score=28.98 Aligned_cols=69 Identities=25% Similarity=0.192 Sum_probs=45.4
Q ss_pred HHHHHHHHCCC-CCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCC----CCCEEEECCCEEECCCCCCCCCCCC
Q ss_conf 99999862410-787993124534777870279983354311122247----8861330311021567412345553
Q gi|254780826|r 191 VFTYLNHIFPE-RGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSAS----VDRFLIGDDEHGWSKEGVFNFEGGC 262 (509)
Q Consensus 191 iFtvmny~lp~-~g~lpmHcsan~~~~~~d~alfFGLSGTGKTTLS~d----~~r~LigDDehgW~d~gvfn~EgGc 262 (509)
.+++++|+... --...+|+.+=.- - +-..|+-|-||.|||.|.-+ .| .||+||-.--.-.+-..+.|.|
T Consensus 119 ~~~l~~yL~~~lA~~~~vHGvl~~I-~-GvGVLItG~SG~GKSElALeLi~rgh-rLVaDD~V~i~~~~~~~L~gr~ 192 (308)
T COG1493 119 SFTLTNYLSRPLAERVNVHGVLLDI-F-GVGVLITGPSGAGKSELALELIKRGH-RLVADDAVEIFREGGNRLVGRA 192 (308)
T ss_pred HHHHHHHHHHHCCCCEEEEEEEEEE-E-EEEEEEECCCCCCHHHHHHHHHHHCC-CEECCCCEEEEECCCCEEEECC
T ss_conf 9999998613105202554689999-4-25899987898877689999998455-0132560788843697676048
No 38
>PRK06217 hypothetical protein; Validated
Probab=90.32 E-value=0.12 Score=30.85 Aligned_cols=35 Identities=31% Similarity=0.427 Sum_probs=25.0
Q ss_pred EEEEECCCCCCCCCCCCC----CCEEEECCCEEECCCCC
Q ss_conf 799833543111222478----86133031102156741
Q gi|254780826|r 221 ALFFGLSGTGKTTLSASV----DRFLIGDDEHGWSKEGV 255 (509)
Q Consensus 221 alfFGLSGTGKTTLS~d~----~r~LigDDehgW~d~gv 255 (509)
.+.+|.||+|||||+..= +-..|.=|..-|-+...
T Consensus 4 I~i~G~sGsGkSTla~~La~~l~~~~~~lD~~~W~p~~~ 42 (185)
T PRK06217 4 IHITGASGSGTTTLGAALAEALDLPHLDTDDFFWLPTDP 42 (185)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEECCCCEECCCCC
T ss_conf 999789988789999999997598968645553568999
No 39
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=90.27 E-value=0.043 Score=33.84 Aligned_cols=72 Identities=22% Similarity=0.379 Sum_probs=36.1
Q ss_pred CEEEEEEECCCCCCCCCCC------CC--CCEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHC
Q ss_conf 7027998335431112224------78--861330311021567412345553211013583335135887530110312
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSA------SV--DRFLIGDDEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSASCRFGTVLE 289 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~------d~--~r~LigDDehgW~d~gvfn~EgGcYaK~i~Ls~~~EP~I~~aa~~~~ailE 289 (509)
+....+-|.||.|||||-. +| .+.+|++- -+-.+---.+-+.|++=+ -||.+|+ |+|.|
T Consensus 361 Ge~vaiVG~SGsGKSTL~~LL~gly~p~~G~I~idg~-------di~~i~~~~lR~~i~~V~-Q~~~LF~-----gTI~e 427 (585)
T PRK13657 361 GQTVAIVGPTGAGKSTLINLLHRVFDPQSGRIRIDGT-------DIRTVTRASLRRNIGVVF-QEAGLFN-----RSIED 427 (585)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEECCE-------ECHHCCHHHHHHHCCEEC-CCCCCCC-----HHHHH
T ss_conf 9889998898986999999986015788796758989-------610168999985252216-6763547-----65998
Q ss_pred CCEECCCCCEECCCCC
Q ss_conf 4005789811114788
Q gi|254780826|r 290 NVVVDECGIPNFKDSS 305 (509)
Q Consensus 290 NV~~d~~~~~df~d~s 305 (509)
|+.+ |+|+.+|..
T Consensus 428 NI~~---g~~~~sd~e 440 (585)
T PRK13657 428 NLRV---GRPDATDEE 440 (585)
T ss_pred HHHC---CCCCCCHHH
T ss_conf 8752---799998688
No 40
>PRK00889 adenylylsulfate kinase; Provisional
Probab=90.19 E-value=0.12 Score=30.86 Aligned_cols=22 Identities=45% Similarity=0.638 Sum_probs=17.9
Q ss_pred CEEEEEEECCCCCCCCCCCCCC
Q ss_conf 7027998335431112224788
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSASVD 239 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d~~ 239 (509)
+-|.-|-||||+|||||+..=.
T Consensus 4 g~viWltGlsgSGKTTia~~l~ 25 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTISHALA 25 (175)
T ss_pred CEEEEEECCCCCCHHHHHHHHH
T ss_conf 8899988989999999999999
No 41
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein; InterPro: IPR012693 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.; GO: 0005524 ATP binding, 0015416 phosphonate transmembrane-transporting ATPase activity, 0015716 phosphonate transport, 0016020 membrane.
Probab=89.98 E-value=0.13 Score=30.59 Aligned_cols=158 Identities=26% Similarity=0.314 Sum_probs=80.1
Q ss_pred CCEEEEEEECCCCCCCCCCCCCCCEEEECCCEEECCCC------CCCCCCCCCCCCCCCCCCC-CHHHHH----------
Q ss_conf 87027998335431112224788613303110215674------1234555321101358333-513588----------
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEG------VFNFEGGCYAKSINLSKET-EPEIFS---------- 279 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~d~~r~LigDDehgW~d~g------vfn~EgGcYaK~i~Ls~~~-EP~I~~---------- 279 (509)
.++....-|+||.|||||==.=+| |+.-| -...| -.-+|| -++.+.. .-++=.
T Consensus 27 ~GE~~~~IG~SGAGKSTLLR~iNr-L~~Gd---k~~~Geilidf~i~~~g------~~i~~~~~~k~LR~~R~~igMIFQ 96 (253)
T TIGR02315 27 PGEFVAVIGPSGAGKSTLLRCINR-LVEGD---KPSSGEILIDFSILLEG------TDITKLRRGKKLRKLRRKIGMIFQ 96 (253)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-HCCCC---CCCCCEEEEEEEEEECC------CHHHHHHHHHHHHHHHHHHCCEEH
T ss_conf 651799973788726799987753-02688---88765089888888727------318767548899999764350110
Q ss_pred --HHHHCCHHHCCCEEC-----CCCCEECCCCCCCCCEEEEEECCCCCC------CCCCCCCCC----------CCEEEE
Q ss_conf --753011031240057-----898111147886767058986000431------000256788----------726999
Q gi|254780826|r 280 --ASCRFGTVLENVVVD-----ECGIPNFKDSSVTENTRAAYPLNFIHN------HAPQSIGKH----------PKHVIM 336 (509)
Q Consensus 280 --aa~~~~ailENV~~d-----~~~~~df~d~s~TeNtR~~yp~~~i~n------~~~~~~~~~----------p~~iif 336 (509)
.-+..-+|||||=.- +.=+.-|.-=+.-+--||-.-|+.+-. |++.--+|+ --+-.+
T Consensus 97 ~yNLi~R~~VL~NVL~GRLg~~~~~~~~~~~F~~~dk~~Al~~L~rVGl~~~A~~RaD~LSGGQQQRVaIARAL~Q~P~l 176 (253)
T TIGR02315 97 HYNLIERLTVLENVLHGRLGYKSTWRSLLGRFSEEDKERALSLLERVGLADKAYQRADQLSGGQQQRVAIARALAQQPKL 176 (253)
T ss_pred HHHCCCCCHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCE
T ss_conf 10237830366764214321450345563258998999999876523878898652132158511689999863689958
Q ss_pred EECCCCCCCCHHHHCCHHH---HHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 6026778876044418588---9999974232456662000125653121001050015683153899999998
Q gi|254780826|r 337 LAADAFGVLPPVAYLNPEK---AVYYFLSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNILKDYIV 407 (509)
Q Consensus 337 l~~d~~gvlPpvsklt~~q---a~~~F~sGyT~k~agte~g~~ep~~tfs~cFg~PF~~~~p~~ya~ll~~~i~ 407 (509)
+.|| =|||=|+|.- .|-+| |.=--|.|+|-- .-+|-.+||..+.+||=
T Consensus 177 ILAD-----EPiASLDP~~s~~VMd~l------k~In~e~GIT~i------------~NLH~VdlA~~Y~dRiv 227 (253)
T TIGR02315 177 ILAD-----EPIASLDPKTSKQVMDYL------KRINKEDGITVI------------VNLHQVDLAKKYADRIV 227 (253)
T ss_pred EEEC-----CCCCCCCHHHHHHHHHHH------HHHHHHCCCEEE------------EECCCHHHHHHHHHHHH
T ss_conf 9704-----884336756789999999------998877697799------------97461787887633776
No 42
>pfam01583 APS_kinase Adenylylsulphate kinase. Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulfate. This domain contains an ATP binding P-loop motif.
Probab=89.92 E-value=0.13 Score=30.75 Aligned_cols=20 Identities=40% Similarity=0.660 Sum_probs=16.8
Q ss_pred CEEEEEEECCCCCCCCCCCC
Q ss_conf 70279983354311122247
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d 237 (509)
+-|.-|-||||+|||||+..
T Consensus 2 G~viW~TGLsGsGKTTlA~~ 21 (157)
T pfam01583 2 GCTVWFTGLSGSGKSTIANA 21 (157)
T ss_pred CEEEEEECCCCCCHHHHHHH
T ss_conf 88999889899999999999
No 43
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=89.90 E-value=0.11 Score=31.11 Aligned_cols=12 Identities=50% Similarity=0.999 Sum_probs=4.0
Q ss_pred EEEECCCCCCCC
Q ss_conf 998335431112
Q gi|254780826|r 222 LFFGLSGTGKTT 233 (509)
Q Consensus 222 lfFGLSGTGKTT 233 (509)
+|||..||||||
T Consensus 56 Il~GPPGtGKTT 67 (726)
T PRK13341 56 ILYGPPGVGKTT 67 (726)
T ss_pred EEECCCCCCHHH
T ss_conf 888979999999
No 44
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=89.83 E-value=0.14 Score=30.50 Aligned_cols=24 Identities=42% Similarity=0.692 Sum_probs=18.4
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCC
Q ss_conf 787027998335431112224788
Q gi|254780826|r 216 EKEDVALFFGLSGTGKTTLSASVD 239 (509)
Q Consensus 216 ~~~d~alfFGLSGTGKTTLS~d~~ 239 (509)
..+.+.++-|.||+|||||---=+
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN 49 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLN 49 (240)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 389789998999998889999997
No 45
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL; InterPro: IPR012701 Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three-component ABC transporter, where IPR005769 from INTERPRO is the permease, IPR005770 from INTERPRO is the phosphonates binding protein, and IPR012693 from INTERPRO is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lyase complex. This protein (PhnL) and the adjacent-encoded PhnK (IPR012700 from INTERPRO) resemble transporter ATP-binding proteins but are suggested, based on mutagenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se ..
Probab=89.76 E-value=0.16 Score=29.99 Aligned_cols=39 Identities=23% Similarity=0.336 Sum_probs=30.0
Q ss_pred HHCCCCCEEEEECCCCCC---CCCCEEEEEEECCCCCCCCCCC
Q ss_conf 624107879931245347---7787027998335431112224
Q gi|254780826|r 197 HIFPERGIMPMHCSINMD---KEKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 197 y~lp~~g~lpmHcsan~~---~~~~d~alfFGLSGTGKTTLS~ 236 (509)
|.|+++|++-+-.=.++. ..| .-...-|-||.||+||=-
T Consensus 11 F~LHqqgG~~LpVl~~v~l~V~aG-Ecv~L~G~SGaGKSTlLk 52 (224)
T TIGR02324 11 FTLHQQGGVRLPVLKNVSLTVNAG-ECVALSGPSGAGKSTLLK 52 (224)
T ss_pred EEHHHCCCEEEEECCCCEEEEECC-CEEEEECCCCCCHHHHHH
T ss_conf 330200786500006743787367-358853688876789999
No 46
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=89.61 E-value=0.13 Score=30.74 Aligned_cols=27 Identities=33% Similarity=0.781 Sum_probs=19.7
Q ss_pred ECCCCCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 12453477787027998335431112224
Q gi|254780826|r 208 HCSINMDKEKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 208 Hcsan~~~~~~d~alfFGLSGTGKTTLS~ 236 (509)
..|-.+. .| ....+.|+||.|||||--
T Consensus 42 dvsl~I~-~G-Ei~~lvGpSGsGKSTLLr 68 (382)
T TIGR03415 42 NASLDIE-EG-EICVLMGLSGSGKSSLLR 68 (382)
T ss_pred CCEEEEC-CC-CEEEEECCCCCHHHHHHH
T ss_conf 5174887-99-899999999734999999
No 47
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=89.49 E-value=0.19 Score=29.54 Aligned_cols=47 Identities=26% Similarity=0.251 Sum_probs=34.7
Q ss_pred EEEECCCCCCCCCCEEEEEEECCCCCCCCCCCC---CCCEEEECCCEEECCC
Q ss_conf 993124534777870279983354311122247---8861330311021567
Q gi|254780826|r 205 MPMHCSINMDKEKEDVALFFGLSGTGKTTLSAS---VDRFLIGDDEHGWSKE 253 (509)
Q Consensus 205 lpmHcsan~~~~~~d~alfFGLSGTGKTTLS~d---~~r~LigDDehgW~d~ 253 (509)
.++|+++=.- .+...|+-|-||.|||+|..+ -...||.||-......
T Consensus 3 ~~~Hg~~v~i--~g~GvLi~G~SG~GKS~lal~Li~rGh~LVaDD~v~i~~~ 52 (149)
T cd01918 3 VTVHGVLVEV--GGIGVLITGPSGIGKSELALELIKRGHRLVADDRVVVKRE 52 (149)
T ss_pred EEEEEEEEEE--CCEEEEEECCCCCCHHHHHHHHHHCCCEEEECCEEEEEEE
T ss_conf 0079999999--9989999878999989999999981997872787999997
No 48
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=89.34 E-value=0.12 Score=30.99 Aligned_cols=17 Identities=41% Similarity=0.733 Sum_probs=14.3
Q ss_pred EEEEECCCCCCCCCCCC
Q ss_conf 79983354311122247
Q gi|254780826|r 221 ALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 221 alfFGLSGTGKTTLS~d 237 (509)
.-|-||||+|||||+..
T Consensus 2 iW~tGLsgsGKTTlA~~ 18 (149)
T cd02027 2 IWLTGLSGSGKSTIARA 18 (149)
T ss_pred EEEECCCCCCHHHHHHH
T ss_conf 89879999999999999
No 49
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=89.20 E-value=1.5 Score=23.56 Aligned_cols=101 Identities=22% Similarity=0.197 Sum_probs=64.4
Q ss_pred CCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCC---CEEECC-CCCCC----
Q ss_conf 1568315389999999881980999816746887688732078899999999984960246---606678-87742----
Q gi|254780826|r 391 MPRDPVQYGNILKDYIVKYCVDCWLVNTGWTAGSYGEGYRMPLSVTRALLKAIFDNSIKSV---PYRVDE-NFGFS---- 462 (509)
Q Consensus 391 ~~~~p~~ya~ll~~~i~~~~~~vyLvNTGw~Gg~~g~G~Ri~l~~Tr~ii~ai~~g~l~~~---~~~~~~-~f~l~---- 462 (509)
+|+.+.-+.-+=.+.+++-+-.+|||||+ |=++=.+.++++|.-+|.|..+ -|+..| +|...
T Consensus 206 ~Plt~~T~~lIn~~~l~~MK~~ailINta----------RG~iVde~aL~~AL~~g~I~gAgLDV~e~EP~~~~~d~~~~ 275 (330)
T PRK12480 206 VPANKESYHLFDKAMFDHVKKGAILVNAA----------RGAVINTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNK 275 (330)
T ss_pred CCCCHHHHCCHHHHHHHHCCCCCEEEECC----------CCCCCCHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCC
T ss_conf 76853312004899997579997699727----------86331999999999759845899855888998644444444
Q ss_pred -CC----CCCCCCCHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -56----20798996564976625998999999999999999999875
Q gi|254780826|r 463 -VP----LEVKGVDRKLLNPRDSWNDVEAYDQKMRELLLMFENNAEKK 505 (509)
Q Consensus 463 -iP----~~~~gv~~~~l~P~~~w~d~~~Y~~~a~~L~~~F~~Nf~~~ 505 (509)
++ ..+-..|.-+|-|...|.-.++-+..+ .+-.+|...|
T Consensus 276 ~~~d~~~~~L~~~~NVilTPHia~~T~ea~~~m~----~~a~~ni~~~ 319 (330)
T PRK12480 276 DIDDKTLLELIEHERILVTPHIAFFSDEAVQNLV----EGGLNAALSV 319 (330)
T ss_pred CCCCHHHHHHHCCCCEEECCCCCCCHHHHHHHHH----HHHHHHHHHH
T ss_conf 5577456887359999998846557899999999----9999999999
No 50
>TIGR00455 apsK adenylylsulfate kinase; InterPro: IPR002891 Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulphate. This domain contains an ATP binding P-loop motif .; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity transferring phosphorus-containing groups, 0000103 sulfate assimilation.
Probab=89.20 E-value=0.041 Score=34.03 Aligned_cols=47 Identities=21% Similarity=0.374 Sum_probs=28.1
Q ss_pred HHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCHHHCCHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99999984960246606678877425620798996564976625998999999999999
Q gi|254780826|r 438 ALLKAIFDNSIKSVPYRVDENFGFSVPLEVKGVDRKLLNPRDSWNDVEAYDQKMRELLL 496 (509)
Q Consensus 438 ~ii~ai~~g~l~~~~~~~~~~f~l~iP~~~~gv~~~~l~P~~~w~d~~~Y~~~a~~L~~ 496 (509)
-+=.-|.+|+|.. | .|+.-|=+-|--|.=+|+ .|+..-++-+.+|.+
T Consensus 139 GLYkKAR~GEIk~--F-----TGID~pYE~P~~Pe~~~~-----tD~~~~~~~~~~i~~ 185 (187)
T TIGR00455 139 GLYKKARNGEIKG--F-----TGIDSPYEAPENPEVVLD-----TDQEDVEECVQQIIE 185 (187)
T ss_pred CHHHHHHCCCCCC--C-----CCCCCCCCCCCCCEEEEE-----CCCHHHHHHHHHHHH
T ss_conf 0238864688865--6-----787887786998706883-----772338889999997
No 51
>PRK13342 recombination factor protein RarA; Reviewed
Probab=89.10 E-value=0.14 Score=30.41 Aligned_cols=16 Identities=50% Similarity=0.841 Sum_probs=8.6
Q ss_pred EEEEEECCCCCCCCCC
Q ss_conf 2799833543111222
Q gi|254780826|r 220 VALFFGLSGTGKTTLS 235 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS 235 (509)
..+|+|..|||||||.
T Consensus 39 s~Il~GPPG~GKTTlA 54 (417)
T PRK13342 39 SMILWGPPGTGKTTLA 54 (417)
T ss_pred EEEEECCCCCCHHHHH
T ss_conf 5998896999899999
No 52
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.02 E-value=0.17 Score=29.93 Aligned_cols=46 Identities=15% Similarity=0.182 Sum_probs=29.4
Q ss_pred CCCCCCCCCCCCEEEHHHCCCCCCCCHHHHHHHHHH---HHHHHCCEEEEEE
Q ss_conf 662000125653121001050015683153899999---9988198099981
Q gi|254780826|r 369 AGTEKGVLKPEATFSACFGAPFMPRDPVQYGNILKD---YIVKYCVDCWLVN 417 (509)
Q Consensus 369 agte~g~~ep~~tfs~cFg~PF~~~~p~~ya~ll~~---~i~~~~~~vyLvN 417 (509)
|=.-+-+.+|.-.+- -+||--+.|..-.+++.. ..++++..+-+|-
T Consensus 110 aIARAL~~~P~ill~---DEPts~LD~~~~~~i~~~l~~l~~~~~~t~i~vT 158 (178)
T cd03229 110 ALARALAMDPDVLLL---DEPTSALDPITRREVRALLKSLQAQLGITVVLVT 158 (178)
T ss_pred HHHHHHHCCCCEEEE---ECCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEC
T ss_conf 999998529999997---0897647999999999999999996499999998
No 53
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=88.98 E-value=0.14 Score=30.37 Aligned_cols=203 Identities=19% Similarity=0.223 Sum_probs=90.1
Q ss_pred EEEEEECCCCCCCCCCCCCCCEEE-----ECCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHCCCEEC
Q ss_conf 279983354311122247886133-----031102156741234555321101358333513588753011031240057
Q gi|254780826|r 220 VALFFGLSGTGKTTLSASVDRFLI-----GDDEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSASCRFGTVLENVVVD 294 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS~d~~r~Li-----gDDehgW~d~gvfn~EgGcYaK~i~Ls~~~EP~I~~aa~~~~ailENV~~d 294 (509)
.-||-|..||||||+.--=-+.|- .|-+-+..=...-.+..|.....+-++...+.-|=+ +| .++|+|.+-
T Consensus 41 AyLF~GprGtGKTT~ArilAkaLnC~~~~~~~~pCg~C~~C~~I~~g~~~DViEiDaAs~~gVdd--IR--el~e~v~~~ 116 (462)
T PRK06305 41 AYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCAICKEISSGTSLDVIEIDGASHRGIED--IR--QINETVLFT 116 (462)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCCCCHHH--HH--HHHHHHCCC
T ss_conf 34303899859999999999996799998888988766888998638999868643553446689--99--999771008
Q ss_pred CCCCEECCCCCCCCCEEEEEECCCCC-------CCCCCCCCCCCCEEEEE--ECCCCCCCCHH---------HHCCHHHH
Q ss_conf 89811114788676705898600043-------10002567887269996--02677887604---------44185889
Q gi|254780826|r 295 ECGIPNFKDSSVTENTRAAYPLNFIH-------NHAPQSIGKHPKHVIML--AADAFGVLPPV---------AYLNPEKA 356 (509)
Q Consensus 295 ~~~~~df~d~s~TeNtR~~yp~~~i~-------n~~~~~~~~~p~~iifl--~~d~~gvlPpv---------sklt~~qa 356 (509)
+. +..+-+|-++-.. |+...-+...|.+++|+ |.++.-++|.| .+++.++-
T Consensus 117 P~-----------~~~yKVyIIDEvhmLs~~AfNALLKtLEEPP~~v~FILaTTe~~KIp~TIlSRCQrf~F~~i~~~~I 185 (462)
T PRK06305 117 PS-----------KSQYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETI 185 (462)
T ss_pred CC-----------CCCEEEEEEECHHHCCHHHHHHHHHHHHCCCCCEEEEEEECCHHHCCHHHHHHHHEEECCCCCHHHH
T ss_conf 86-----------7750599981521179999999999861898774999981881428547876540233257999999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCEEEHHHCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHH
Q ss_conf 99997423245666200012565312100105001568315389999999881980999816746887688732078899
Q gi|254780826|r 357 VYYFLSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNILKDYIVKYCVDCWLVNTGWTAGSYGEGYRMPLSVT 436 (509)
Q Consensus 357 ~~~F~sGyT~k~agte~g~~ep~~tfs~cFg~PF~~~~p~~ya~ll~~~i~~~~~~vyLvNTGw~Gg~~g~G~Ri~l~~T 436 (509)
+.|.. +++-.|.---|..+..--. -..---.+.|..|.+.+-.++-.- |..--+-.- .| -++-+.-
T Consensus 186 ~~~L~-----~I~~~E~i~~e~~AL~lIA----~~a~GsmRDAlslLDQ~i~~~~~~--it~~~V~~~--lG-~v~~~~l 251 (462)
T PRK06305 186 IDKLA-----LIAQQDGIETSREALLPIA----RAAQGSLRDAESLYDYVVGLFPKS--LSPDTVAKA--LG-LLSQDSL 251 (462)
T ss_pred HHHHH-----HHHHHCCCCCCHHHHHHHH----HHCCCCHHHHHHHHHHHHHHCCCC--CCHHHHHHH--HC-CCCHHHH
T ss_conf 99999-----9999839985999999999----985895878999999999847998--689999998--68-9988999
Q ss_pred HHHHHHHHCCCCCCC
Q ss_conf 999999984960246
Q gi|254780826|r 437 RALLKAIFDNSIKSV 451 (509)
Q Consensus 437 r~ii~ai~~g~l~~~ 451 (509)
-.++++|+++...++
T Consensus 252 ~~L~~ai~~~d~~~~ 266 (462)
T PRK06305 252 YTLAEAITTQNYAQA 266 (462)
T ss_pred HHHHHHHHCCCHHHH
T ss_conf 999999983899999
No 54
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family; InterPro: IPR004346 This family includes the Helicobacter pylori protein CagE (see examples), which together with other proteins from the cag pathogenicity island (PAI), encodes a type IV transporter secretion system. The precise role of CagE is not known, but studies in animal models have shown that it is essential for pathogenesis in Helicobacter pylori induced gastritis and peptic ulceration . Indeed, the expression of the cag PAI has been shown to be essential for stimulating human gastric epithelial cell apoptosis in vitro . Similar type IV transport systems are also found in other bacteria. This family includes proteins from the trb and Vir conjugal transfer systems in Agrobacterium tumefaciens and homologues of VirB proteins from other species.; GO: 0005524 ATP binding.
Probab=88.89 E-value=0.14 Score=30.39 Aligned_cols=17 Identities=53% Similarity=0.802 Sum_probs=14.3
Q ss_pred EEEEEECCCCCCCCCCC
Q ss_conf 27998335431112224
Q gi|254780826|r 220 VALFFGLSGTGKTTLSA 236 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS~ 236 (509)
-++.||-||+|||||=.
T Consensus 518 hT~IfG~~G~GKTtLl~ 534 (931)
T TIGR00929 518 HTLIFGPTGSGKTTLLN 534 (931)
T ss_pred CEEEECCCCCCHHHHHH
T ss_conf 77788888984699999
No 55
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=88.80 E-value=0.18 Score=29.79 Aligned_cols=44 Identities=23% Similarity=0.166 Sum_probs=26.0
Q ss_pred CCCCCCCCCCEEEHHHCCCCCCCCHHHHHHHHH--HHHHHHCCEEEEEEC
Q ss_conf 200012565312100105001568315389999--999881980999816
Q gi|254780826|r 371 TEKGVLKPEATFSACFGAPFMPRDPVQYGNILK--DYIVKYCVDCWLVNT 418 (509)
Q Consensus 371 te~g~~ep~~tfs~cFg~PF~~~~p~~ya~ll~--~~i~~~~~~vyLvNT 418 (509)
.-+=+.+|.-.+- -+|+=-+.|....+++. +.+++.++.+ ++-|
T Consensus 148 ARALv~~P~ill~---DEPT~~LD~~~~~~i~~ll~~l~~~g~Ti-i~vT 193 (214)
T cd03292 148 ARAIVNSPTILIA---DEPTGNLDPDTTWEIMNLLKKINKAGTTV-VVAT 193 (214)
T ss_pred HHHHHCCCCEEEE---CCCCCCCCHHHHHHHHHHHHHHHHCCCEE-EEEC
T ss_conf 9999729999998---39878779899999999999998509999-9989
No 56
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=88.78 E-value=0.18 Score=29.74 Aligned_cols=34 Identities=26% Similarity=0.533 Sum_probs=23.0
Q ss_pred CCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 078799312453477787027998335431112224
Q gi|254780826|r 201 ERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 201 ~~g~lpmHcsan~~~~~~d~alfFGLSGTGKTTLS~ 236 (509)
+.|-+.+..+..+. .+ .+..+||.||.|||||--
T Consensus 9 ~~g~f~ldv~l~i~-~g-~i~~l~GpsGaGKTTLl~ 42 (352)
T PRK11144 9 QLGQLCLTVNLTLP-AQ-GITAIFGRSGAGKTSLIN 42 (352)
T ss_pred EECCEEEEEEEEEC-CC-CEEEEECCCCCHHHHHHH
T ss_conf 98999999999988-99-899999999962999999
No 57
>PRK08118 topology modulation protein; Reviewed
Probab=88.53 E-value=0.21 Score=29.35 Aligned_cols=35 Identities=23% Similarity=0.333 Sum_probs=26.5
Q ss_pred EEEEECCCCCCCCCCCC----CCCEEEECCCEEECCCCC
Q ss_conf 79983354311122247----886133031102156741
Q gi|254780826|r 221 ALFFGLSGTGKTTLSAS----VDRFLIGDDEHGWSKEGV 255 (509)
Q Consensus 221 alfFGLSGTGKTTLS~d----~~r~LigDDehgW~d~gv 255 (509)
.+..|-||+|||||+.. -+-.++.=|..-|.++..
T Consensus 4 I~IiG~~GsGKSTlAr~L~~~~~ip~~~LD~l~w~~~w~ 42 (167)
T PRK08118 4 IILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPNWE 42 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEECCCEEECCCCC
T ss_conf 999889998799999999998896979644347668994
No 58
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein; InterPro: IPR005666 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). These proteins are involved in the transmembrane transport of sulphate and thiosulphate.; GO: 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0016020 membrane.
Probab=88.37 E-value=0.2 Score=29.44 Aligned_cols=172 Identities=19% Similarity=0.248 Sum_probs=86.4
Q ss_pred CCEEEEEEECCCCCCCCCCC--------CCC-CEEEECCCEEEC--CCCC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHC
Q ss_conf 87027998335431112224--------788-613303110215--6741-23455532110135833351358875301
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSA--------SVD-RFLIGDDEHGWS--KEGV-FNFEGGCYAKSINLSKETEPEIFSASCRF 284 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~--------d~~-r~LigDDehgW~--d~gv-fn~EgGcYaK~i~Ls~~~EP~I~~aa~~~ 284 (509)
.+.-..+.|.||+|||||-- |.. -.+-|.|.--.. +..| |-|-- | |.-+.
T Consensus 25 ~G~lvaLLGPSGSGKsTLLR~iAGLe~pd~G~I~~~G~D~t~~~~~~R~iGFVFQ~-----------------Y-AlF~H 86 (241)
T TIGR00968 25 TGSLVALLGPSGSGKSTLLRVIAGLEQPDSGRIILNGRDATRVKLRDREIGFVFQH-----------------Y-ALFKH 86 (241)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEH-----------------H-HHCCC
T ss_conf 85279854689873789999983579998426998520022132013621227700-----------------1-31256
Q ss_pred CHHHCCCEECCCCCEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHCCHHHHHHHHHHHC
Q ss_conf 10312400578981111478867670589860004310002567887269996026778876044418588999997423
Q gi|254780826|r 285 GTVLENVVVDECGIPNFKDSSVTENTRAAYPLNFIHNHAPQSIGKHPKHVIMLAADAFGVLPPVAYLNPEKAVYYFLSGY 364 (509)
Q Consensus 285 ~ailENV~~d~~~~~df~d~s~TeNtR~~yp~~~i~n~~~~~~~~~p~~iifl~~d~~gvlPpvsklt~~qa~~~F~sGy 364 (509)
-||-+||++-=.=+| .|--.+-..+..++.. |=.---...|..-|
T Consensus 87 lTv~~NiAFGL~~~p----------~~~k~~~~~~k~~V~~-------------------------LL~lvqL~~l~~rY 131 (241)
T TIGR00968 87 LTVRDNIAFGLEIRP----------RREKHPKAKIKARVEE-------------------------LLELVQLEGLGDRY 131 (241)
T ss_pred CCHHHHHCCCCEEEC----------CCCCCCHHHHHHHHHH-------------------------HHHHHHHHHHHHCC
T ss_conf 511101001422302----------1026757889999999-------------------------99987465443127
Q ss_pred CCCCCC--------CCCCCCCCCCEEEHHHCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHH
Q ss_conf 245666--------200012565312100105001568315389999999881980999816746887688732078899
Q gi|254780826|r 365 TAKVAG--------TEKGVLKPEATFSACFGAPFMPRDPVQYGNILKDYIVKYCVDCWLVNTGWTAGSYGEGYRMPLSVT 436 (509)
Q Consensus 365 T~k~ag--------te~g~~ep~~tfs~cFg~PF~~~~p~~ya~ll~~~i~~~~~~vyLvNTGw~Gg~~g~G~Ri~l~~T 436 (509)
-+..+| ..+-.-+|+...-- +||=.+...+- +-|..++++-.-++-+--. .+- +.--+-|.+...
T Consensus 132 P~QLSGGQrQRvALARALAv~P~vLLLD---EPFgALDAkvR-k~LR~WLR~LH~e~~~T~V-fVT--HD~~EA~evAd~ 204 (241)
T TIGR00968 132 PNQLSGGQRQRVALARALAVEPQVLLLD---EPFGALDAKVR-KELRAWLRKLHDEVHVTTV-FVT--HDQEEAMEVADR 204 (241)
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCEEEEE---CCHHHHHHHHH-HHHHHHHHHHCCEEEEEEE-EEE--CCHHHHHHHHHH
T ss_conf 4203573378999998863398157620---87145428999-9999999874030567799-986--285899888744
Q ss_pred HHHHHHHHCCCCCCC
Q ss_conf 999999984960246
Q gi|254780826|r 437 RALLKAIFDNSIKSV 451 (509)
Q Consensus 437 r~ii~ai~~g~l~~~ 451 (509)
-.+ +..|++..+
T Consensus 205 ivv---~~~G~i~Q~ 216 (241)
T TIGR00968 205 IVV---LSNGKIEQV 216 (241)
T ss_pred HHH---HCCCCEEEC
T ss_conf 013---217827871
No 59
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein; InterPro: IPR005670 This is a family of phosphate transport system permease proteins.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0015114 phosphate transmembrane transporter activity, 0006817 phosphate transport, 0016020 membrane.
Probab=88.35 E-value=0.21 Score=29.23 Aligned_cols=69 Identities=29% Similarity=0.476 Sum_probs=37.3
Q ss_pred CEEEEEEECCCCCCCCCCCCCCCEEEECCCEEECCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHH-----H----CCHH
Q ss_conf 7027998335431112224788613303110215674123455-5321101358333513588753-----0----1103
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEG-GCYAKSINLSKETEPEIFSASC-----R----FGTV 287 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d~~r~LigDDehgW~d~gvfn~Eg-GcYaK~i~Ls~~~EP~I~~aa~-----~----~~ai 287 (509)
..|+.|-|.||.|||||==-=|| +.|---+---.|-.-|+| --|.+-+|... ++.-+ | +=+|
T Consensus 27 n~vTAlIGPSGCGKSTlLR~lNR--MnDl~~~~r~~G~v~f~G~dIy~~~~D~~~------LR~~vGMVFQ~PNPFpmSI 98 (248)
T TIGR00972 27 NQVTALIGPSGCGKSTLLRSLNR--MNDLVPGVRIEGKVLFDGQDIYDKKIDVVE------LRKRVGMVFQKPNPFPMSI 98 (248)
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--HHHHCCCEEEEEEEEECCCCCCCCCCCHHH------HHHHCCCCCCCCCCCCCCH
T ss_conf 70589877889867899999887--764078816888898645114565668788------7622585214789788405
Q ss_pred HCCCEEC
Q ss_conf 1240057
Q gi|254780826|r 288 LENVVVD 294 (509)
Q Consensus 288 lENV~~d 294 (509)
.|||++-
T Consensus 99 ydNiayG 105 (248)
T TIGR00972 99 YDNIAYG 105 (248)
T ss_pred HHHHHHH
T ss_conf 5675452
No 60
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.33 E-value=0.097 Score=31.50 Aligned_cols=19 Identities=32% Similarity=0.466 Sum_probs=16.3
Q ss_pred CEEEEEEECCCCCCCCCCC
Q ss_conf 7027998335431112224
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~ 236 (509)
+....+.|.||+|||||..
T Consensus 27 Ge~v~ivG~sGsGKSTLl~ 45 (236)
T cd03253 27 GKKVAIVGPSGSGKSTILR 45 (236)
T ss_pred CCEEEEECCCCCCHHHHHH
T ss_conf 9999999999998999999
No 61
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=88.13 E-value=0.21 Score=29.27 Aligned_cols=57 Identities=16% Similarity=0.072 Sum_probs=32.3
Q ss_pred HHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHCCCCCCCCHHHHHHHHHH--HHHHHCCEEEEEEC
Q ss_conf 44185889999974232456662000125653121001050015683153899999--99881980999816
Q gi|254780826|r 349 AYLNPEKAVYYFLSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNILKD--YIVKYCVDCWLVNT 418 (509)
Q Consensus 349 sklt~~qa~~~F~sGyT~k~agte~g~~ep~~tfs~cFg~PF~~~~p~~ya~ll~~--~i~~~~~~vyLvNT 418 (509)
+.||-.|.. ++|=.-+-+.+|.-.+-- +|.=-+.|..-.+++.- .+.+.+.. -++-|
T Consensus 133 ~~LSGGe~Q---------RVAIARAL~~~P~illaD---EPT~~LD~~~~~~i~~ll~~l~~~g~t-ii~vT 191 (206)
T TIGR03608 133 YELSGGEQQ---------RVALARAILKPSELILAD---EPTGSLDPKNRDEVLDLLLELNDEGKT-IIIVT 191 (206)
T ss_pred HHCCHHHHH---------HHHHHHHHHCCCCEEEEC---CCCCCCCHHHHHHHHHHHHHHHHCCCE-EEEEC
T ss_conf 444869999---------999999982499999963---998778999999999999999867999-99989
No 62
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=88.07 E-value=0.21 Score=29.34 Aligned_cols=51 Identities=29% Similarity=0.638 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHH------HHCCCCC-EEEE-ECCCCCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 8887789999998------6241078-7993-12453477787027998335431112224
Q gi|254780826|r 184 AGEIKKSVFTYLN------HIFPERG-IMPM-HCSINMDKEKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 184 aGEiKKsiFtvmn------y~lp~~g-~lpm-Hcsan~~~~~~d~alfFGLSGTGKTTLS~ 236 (509)
+|.-.+-.+.++. -++.+.| ++.+ ..|-.+. .| ....+.|.||+|||||--
T Consensus 14 fg~~~~~a~~~~~~g~~k~ei~~~tg~~vAv~dVsl~I~-~G-Ei~~ivG~SGsGKSTLlr 72 (400)
T PRK10070 14 FGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIE-EG-EIFVIMGLSGSGKSTMVR 72 (400)
T ss_pred CCCCHHHHHHHHHCCCCHHHHHHHHCCEEEEECCEEEEC-CC-CEEEEECCCCCHHHHHHH
T ss_conf 298989999998769998999986499998974076887-99-999999999846999999
No 63
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=88.03 E-value=0.21 Score=29.24 Aligned_cols=45 Identities=13% Similarity=0.087 Sum_probs=29.9
Q ss_pred CCCCCCCCCCEEEHHHCCCCCCCCHHHHHHHH---HHHHHHHCCEEEEEEC
Q ss_conf 20001256531210010500156831538999---9999881980999816
Q gi|254780826|r 371 TEKGVLKPEATFSACFGAPFMPRDPVQYGNIL---KDYIVKYCVDCWLVNT 418 (509)
Q Consensus 371 te~g~~ep~~tfs~cFg~PF~~~~p~~ya~ll---~~~i~~~~~~vyLvNT 418 (509)
.-+-+.+|.-.. +-+||=.+.|..-.++. .+..++.++.+-+|--
T Consensus 142 ARAl~~~P~lLL---lDEP~saLD~~~r~~i~~~l~~~~~~~~~T~i~vTH 189 (213)
T cd03301 142 GRAIVREPKVFL---MDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTH 189 (213)
T ss_pred HHHHHCCCCEEE---ECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECC
T ss_conf 999875999899---838876429899999999999999974998999999
No 64
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=87.97 E-value=1.4 Score=23.94 Aligned_cols=19 Identities=32% Similarity=0.518 Sum_probs=15.4
Q ss_pred CEEEEEEECCCCCCCCCCC
Q ss_conf 7027998335431112224
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~ 236 (509)
.-+++..|..++|||||++
T Consensus 73 ~~~vmvvG~vDSGKSTLt~ 91 (398)
T COG1341 73 VGVVMVVGPVDSGKSTLTT 91 (398)
T ss_pred CCEEEEECCCCCCHHHHHH
T ss_conf 7389998986767889999
No 65
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=87.92 E-value=0.12 Score=31.02 Aligned_cols=19 Identities=32% Similarity=0.538 Sum_probs=16.4
Q ss_pred CEEEEEEECCCCCCCCCCC
Q ss_conf 7027998335431112224
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~ 236 (509)
+....+-|.||.|||||..
T Consensus 367 Ge~vaiVG~SGsGKSTL~~ 385 (575)
T PRK11160 367 GEKVALLGRTGCGKSTLLQ 385 (575)
T ss_pred CCEEEEECCCCCCHHHHHH
T ss_conf 9889998899975999999
No 66
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=87.70 E-value=0.3 Score=28.30 Aligned_cols=32 Identities=34% Similarity=0.635 Sum_probs=22.1
Q ss_pred CEEEEEEECCCCCCCCCCCCC-----CCEEEECCCEE
Q ss_conf 702799833543111222478-----86133031102
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSASV-----DRFLIGDDEHG 249 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d~-----~r~LigDDehg 249 (509)
.-+.+..|.||+||||+-..= -..+=|||-|-
T Consensus 8 ~~iiVVMGVsGsGKSTig~~LA~~l~~~fiegDdfHp 44 (177)
T PRK11545 8 HHIYVLMGVSGSGKSAVASAVAHQLHAAFLDGDFLHP 44 (177)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEECCCCCCC
T ss_conf 7599998479899999999999981998553655589
No 67
>TIGR00959 ffh signal recognition particle protein; InterPro: IPR004780 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes , . SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor . In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. This entry represents various SRP subunits.; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle.
Probab=87.69 E-value=0.18 Score=29.72 Aligned_cols=18 Identities=50% Similarity=0.783 Sum_probs=16.1
Q ss_pred EEEEEEECCCCCCCCCCC
Q ss_conf 027998335431112224
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~ 236 (509)
-+.+|-||=|+||||.++
T Consensus 103 ~vilmvGLQGsGKTTt~g 120 (439)
T TIGR00959 103 TVILMVGLQGSGKTTTAG 120 (439)
T ss_pred EEEEEECCCCCCHHHHHH
T ss_conf 389973137885788999
No 68
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=87.69 E-value=0.21 Score=29.34 Aligned_cols=44 Identities=18% Similarity=0.246 Sum_probs=25.9
Q ss_pred CCCCCCCCCCEEEHHHCCCCCCCCHHHHHHHHHH--HHHHHCCEEEEEEC
Q ss_conf 2000125653121001050015683153899999--99881980999816
Q gi|254780826|r 371 TEKGVLKPEATFSACFGAPFMPRDPVQYGNILKD--YIVKYCVDCWLVNT 418 (509)
Q Consensus 371 te~g~~ep~~tfs~cFg~PF~~~~p~~ya~ll~~--~i~~~~~~vyLvNT 418 (509)
.-+-+.+|.-.+- -+|+=-+.|..-.+++.. .+.+.+..+ ++-|
T Consensus 147 ARALa~~P~ilL~---DEPts~LD~~~~~~i~~ll~~l~~~g~T~-i~VT 192 (213)
T cd03262 147 ARALAMNPKVMLF---DEPTSALDPELVGEVLDVMKDLAEEGMTM-VVVT 192 (213)
T ss_pred HHHHCCCCCEEEE---CCCCCCCCHHHHHHHHHHHHHHHHCCCEE-EEEC
T ss_conf 9996379999997---08888779899999999999998629999-9999
No 69
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=87.58 E-value=0.033 Score=34.59 Aligned_cols=139 Identities=15% Similarity=0.247 Sum_probs=60.4
Q ss_pred EEEEEEECCCCCCCCCCCCCCCEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH----CCHHHCCCEEC
Q ss_conf 02799833543111222478861330311021567412345553211013583335135887530----11031240057
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSASCR----FGTVLENVVVD 294 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d~~r~LigDDehgW~d~gvfn~EgGcYaK~i~Ls~~~EP~I~~aa~~----~~ailENV~~d 294 (509)
..-||-|..|+|||||.-.=-|.|....+-.-...+..+..+-| .-|-.+....+|.++.-... -+..-.+..+|
T Consensus 46 HA~Lf~GP~GiGKaTlA~~~A~~Ll~~~~~~~~~~~~~~pd~~~-~~~r~i~~g~hpdl~~i~r~~d~k~~~~~~~I~vd 124 (352)
T PRK09112 46 HALLFEGPEGIGKATLAFHLANHILSHPDPNEAPETLADPDPAS-PLWRQIAQGAHPNLLHLTRPFDEKTGKFKTAITVD 124 (352)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC-HHHHHHHCCCCCCEEEEECCCCHHHHHHHCCCCHH
T ss_conf 24653589980899999999999866998666865567888787-78999974899995655343220214543357779
Q ss_pred CCCC-EECCCCCCCCCEEEEEECCCCC-------CCCCCCCCCCCCEEEE-EECCCC-CCCCHH---------HHCCHHH
Q ss_conf 8981-1114788676705898600043-------1000256788726999-602677-887604---------4418588
Q gi|254780826|r 295 ECGI-PNFKDSSVTENTRAAYPLNFIH-------NHAPQSIGKHPKHVIM-LAADAF-GVLPPV---------AYLNPEK 355 (509)
Q Consensus 295 ~~~~-~df~d~s~TeNtR~~yp~~~i~-------n~~~~~~~~~p~~iif-l~~d~~-gvlPpv---------sklt~~q 355 (509)
+-+. ..|...+-.++++=++-++-.+ |+....+...|.+++| |++... .++|.| ..|+++.
T Consensus 125 ~iR~l~~~~~~~~~~~~~kv~Iid~ad~m~~~aaNALLK~LEEPp~~~~fiLit~~~~~ll~TI~SRCq~~~f~pL~~~d 204 (352)
T PRK09112 125 EIRRVTHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDE 204 (352)
T ss_pred HHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHCHHHHHHHCCCCCCCCCCHHH
T ss_conf 99999998454886688069998187874699999999985348987489988699777768999743321488939899
Q ss_pred HHH
Q ss_conf 999
Q gi|254780826|r 356 AVY 358 (509)
Q Consensus 356 a~~ 358 (509)
.+.
T Consensus 205 i~~ 207 (352)
T PRK09112 205 LKK 207 (352)
T ss_pred HHH
T ss_conf 999
No 70
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=87.53 E-value=0.24 Score=28.96 Aligned_cols=42 Identities=17% Similarity=0.199 Sum_probs=27.1
Q ss_pred CCCCCCCCEEEHHHCCCCCCCCHHHHHHHHHH---HHHHHCCEEEEEE
Q ss_conf 00125653121001050015683153899999---9988198099981
Q gi|254780826|r 373 KGVLKPEATFSACFGAPFMPRDPVQYGNILKD---YIVKYCVDCWLVN 417 (509)
Q Consensus 373 ~g~~ep~~tfs~cFg~PF~~~~p~~ya~ll~~---~i~~~~~~vyLvN 417 (509)
+-+.+|.... +-+||--+.|....+++.. ..++.+..+-+|-
T Consensus 142 AL~~~P~ilL---lDEPts~LD~~~~~~l~~~l~~l~~~~~~Tvi~vT 186 (211)
T cd03298 142 VLVRDKPVLL---LDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVT 186 (211)
T ss_pred HHHCCCCEEE---ECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEC
T ss_conf 9865999999---71887655989999999999999997499899998
No 71
>PRK13243 glyoxylate reductase; Reviewed
Probab=87.52 E-value=1.9 Score=22.90 Aligned_cols=96 Identities=22% Similarity=0.211 Sum_probs=61.3
Q ss_pred CCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC----CCCEEECCCCCCCCCCC
Q ss_conf 15683153899999998819809998167468876887320788999999999849602----46606678877425620
Q gi|254780826|r 391 MPRDPVQYGNILKDYIVKYCVDCWLVNTGWTAGSYGEGYRMPLSVTRALLKAIFDNSIK----SVPYRVDENFGFSVPLE 466 (509)
Q Consensus 391 ~~~~p~~ya~ll~~~i~~~~~~vyLvNTGw~Gg~~g~G~Ri~l~~Tr~ii~ai~~g~l~----~~~~~~~~~f~l~iP~~ 466 (509)
+|+.+.-+.-+=++.++.-+-.++||||+ |=++=..-++++|.-+|.|. +| |...|..+ ..
T Consensus 212 ~Plt~eT~~li~~~~~~~MK~~a~lIN~a----------RG~iVde~aL~~aL~~g~i~gA~lDV-f~~EP~~~----~~ 276 (333)
T PRK13243 212 VPLTKETYHMINEERLKLMKKTAILVNIA----------RGKVVDTKALVKALKEGWIAGAGLDV-FEEEPYYN----EE 276 (333)
T ss_pred CCCCCCCCCCCCHHHHHHCCCCEEEEECC----------CCHHCCHHHHHHHHHHCCCEEEEEEC-CCCCCCCC----CH
T ss_conf 55860134613699997179981999858----------84003999999999809913899847-99999999----35
Q ss_pred CCCCCHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 798996564976625998999999999999999999875
Q gi|254780826|r 467 VKGVDRKLLNPRDSWNDVEAYDQKMRELLLMFENNAEKK 505 (509)
Q Consensus 467 ~~gv~~~~l~P~~~w~d~~~Y~~~a~~L~~~F~~Nf~~~ 505 (509)
+-..|.-++.|.-.|.-.++....+.. ..+|-..|
T Consensus 277 L~~~~nvi~TPHia~~T~ea~~~~~~~----~~~ni~~~ 311 (333)
T PRK13243 277 LFSLDNVVLAPHIGSATFEAREGMAEL----VAENLIAF 311 (333)
T ss_pred HHCCCCEEECCCCCCCHHHHHHHHHHH----HHHHHHHH
T ss_conf 765999999884441549999999999----99999999
No 72
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=87.49 E-value=0.23 Score=28.99 Aligned_cols=22 Identities=36% Similarity=0.505 Sum_probs=18.7
Q ss_pred CCCEEEEEEECCCCCCCCCCCC
Q ss_conf 7870279983354311122247
Q gi|254780826|r 216 EKEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 216 ~~~d~alfFGLSGTGKTTLS~d 237 (509)
..+.++|+-|.||||||||+..
T Consensus 264 ~~GsstLi~Gp~GtGKTtla~q 285 (501)
T PRK09302 264 FRGSIILVSGATGTGKTLLVSK 285 (501)
T ss_pred CCCCEEEEECCCCCCHHHHHHH
T ss_conf 5894699988999888999999
No 73
>TIGR01846 type_I_sec_HlyB type I secretion system ATPase; InterPro: IPR010132 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This entry contains one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane.
Probab=87.38 E-value=0.42 Score=27.31 Aligned_cols=38 Identities=26% Similarity=0.415 Sum_probs=26.5
Q ss_pred CCCCCCCEEEEEEECCCCCCCCCCC--------CCCCEEEECCCEE
Q ss_conf 3477787027998335431112224--------7886133031102
Q gi|254780826|r 212 NMDKEKEDVALFFGLSGTGKTTLSA--------SVDRFLIGDDEHG 249 (509)
Q Consensus 212 n~~~~~~d~alfFGLSGTGKTTLS~--------d~~r~LigDDehg 249 (509)
|.+-..+.+.-.-|.||+||+||+- +..|.||.--..+
T Consensus 485 ~L~I~~Ge~IGIvGpSGSGKSTLTKL~QRLYtP~~GqVLVDG~DLA 530 (703)
T TIGR01846 485 SLDIKPGEVIGIVGPSGSGKSTLTKLLQRLYTPEHGQVLVDGVDLA 530 (703)
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCC
T ss_conf 8765786579987278986789999988614888874777030001
No 74
>PRK12289 ribosome-associated GTPase; Reviewed
Probab=87.34 E-value=0.81 Score=25.40 Aligned_cols=34 Identities=26% Similarity=0.488 Sum_probs=26.2
Q ss_pred CEEEEECCCCCCC--------CCCEEEEEEECCCCCCCCCCC
Q ss_conf 8799312453477--------787027998335431112224
Q gi|254780826|r 203 GIMPMHCSINMDK--------EKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 203 g~lpmHcsan~~~--------~~~d~alfFGLSGTGKTTLS~ 236 (509)
|+-++.+|++.+. -.+.+++|-|.||-|||||--
T Consensus 148 GY~~i~iS~~~~~gl~~L~~~L~~k~tv~~G~SGVGKSSLIN 189 (351)
T PRK12289 148 GYQPLFISVEQGIGLEALLKQLRNKITVVAGPSGVGKSSLIN 189 (351)
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCCHHHHHH
T ss_conf 982899967899689999998759869998179887889887
No 75
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=87.26 E-value=0.3 Score=28.30 Aligned_cols=30 Identities=33% Similarity=0.774 Sum_probs=20.3
Q ss_pred EEEEEEECCCCCCCCCCCCCC-----CEEEECCCE
Q ss_conf 027998335431112224788-----613303110
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSASVD-----RFLIGDDEH 248 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d~~-----r~LigDDeh 248 (509)
...+..|.||+||||+-.-=. ..+=|||-|
T Consensus 4 ~a~VVmGVsGsGKSTvg~~LA~~L~~~fiegDd~H 38 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLH 38 (176)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHCCCEECCCCCC
T ss_conf 57999828989989999999999598776234437
No 76
>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763 This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.
Probab=87.25 E-value=0.17 Score=29.88 Aligned_cols=125 Identities=20% Similarity=0.285 Sum_probs=52.7
Q ss_pred EEEEEECCCCCCCCCC----CCCCCEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHCCCEECC
Q ss_conf 2799833543111222----478861330311021567412345553211013583335135887530110312400578
Q gi|254780826|r 220 VALFFGLSGTGKTTLS----ASVDRFLIGDDEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSASCRFGTVLENVVVDE 295 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS----~d~~r~LigDDehgW~d~gvfn~EgGcYaK~i~Ls~~~EP~I~~aa~~~~ailENV~~d~ 295 (509)
.=||.|.-||||||.. ..=|.. --|.|-+=.=+..--+..|-..-.|-+|+.+---+=+ +| -++|||.+-+
T Consensus 38 AYLF~GpRGtGKTS~ARIfAKaLNC~-~~~~~PCn~C~~C~~i~~g~~~DviEiDAASN~gVD~--IR--~l~e~v~y~P 112 (363)
T TIGR02397 38 AYLFSGPRGTGKTSIARIFAKALNCQ-GPDGEPCNECESCKEINSGSSLDVIEIDAASNNGVDD--IR--ELRENVKYAP 112 (363)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHCCC-CCCCCCCCCCCHHHHHHCCCCCCEEEECCCCCCCHHH--HH--HHHHHHCCCC
T ss_conf 34502859976355899999986588-7877877775022776528986668864865687889--99--9987303687
Q ss_pred CCCEECCCCCCCCCEEEEEECCCCC-------CCCCCCCCCCCCEEEEE--ECCCCCCCCH---------HHHCCHHHHH
Q ss_conf 9811114788676705898600043-------10002567887269996--0267788760---------4441858899
Q gi|254780826|r 296 CGIPNFKDSSVTENTRAAYPLNFIH-------NHAPQSIGKHPKHVIML--AADAFGVLPP---------VAYLNPEKAV 357 (509)
Q Consensus 296 ~~~~df~d~s~TeNtR~~yp~~~i~-------n~~~~~~~~~p~~iifl--~~d~~gvlPp---------vsklt~~qa~ 357 (509)
. .-.-=+|-||=+. ||-..-+-..|.+|+|+ |+|+.=+++= +.|++.++-+
T Consensus 113 ~-----------~~kYKvYIIDEVHMLS~~AFNALLKTLEEPP~hV~FIlATTE~~KiP~TIlSRCQrF~Fk~i~~~~i~ 181 (363)
T TIGR02397 113 S-----------KGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIV 181 (363)
T ss_pred C-----------CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHCCCCCEEECEEECCCCCCHHHHH
T ss_conf 5-----------54433588732302865689998765227987628887348711205540210003126789989999
Q ss_pred HHH
Q ss_conf 999
Q gi|254780826|r 358 YYF 360 (509)
Q Consensus 358 ~~F 360 (509)
-|.
T Consensus 182 ~~L 184 (363)
T TIGR02397 182 ERL 184 (363)
T ss_pred HHH
T ss_conf 999
No 77
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=87.17 E-value=0.26 Score=28.70 Aligned_cols=18 Identities=44% Similarity=0.632 Sum_probs=15.1
Q ss_pred CEEEEEEECCCCCCCCCC
Q ss_conf 702799833543111222
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLS 235 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS 235 (509)
+....++|.||.|||||-
T Consensus 31 Gef~tlLGPSGcGKTTlL 48 (352)
T COG3842 31 GEFVTLLGPSGCGKTTLL 48 (352)
T ss_pred CCEEEEECCCCCCHHHHH
T ss_conf 868999899888889999
No 78
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=87.01 E-value=0.46 Score=27.07 Aligned_cols=31 Identities=26% Similarity=0.387 Sum_probs=23.1
Q ss_pred EEEEECCCCCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 799312453477787027998335431112224
Q gi|254780826|r 204 IMPMHCSINMDKEKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 204 ~lpmHcsan~~~~~~d~alfFGLSGTGKTTLS~ 236 (509)
.+.+|. .++-+.| .+..+.|.||.|||||-.
T Consensus 14 ~~~l~~-L~ipk~G-Ei~gLiGpNGaGKSTLlk 44 (255)
T cd03236 14 SFKLHR-LPVPREG-QVLGLVGPNGIGKSTALK 44 (255)
T ss_pred CEEEEC-CCCCCCC-EEEEEECCCCCCHHHHHH
T ss_conf 736517-8989898-099998999970999999
No 79
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=86.67 E-value=0.28 Score=28.51 Aligned_cols=44 Identities=9% Similarity=0.177 Sum_probs=30.4
Q ss_pred CCCCCCCCCCEEEHHHCCCCCCCCHHHHHHHHHH---HHHHHCCEEEEEE
Q ss_conf 2000125653121001050015683153899999---9988198099981
Q gi|254780826|r 371 TEKGVLKPEATFSACFGAPFMPRDPVQYGNILKD---YIVKYCVDCWLVN 417 (509)
Q Consensus 371 te~g~~ep~~tfs~cFg~PF~~~~p~~ya~ll~~---~i~~~~~~vyLvN 417 (509)
.-+-+.+|.-.+- -+||=.+.|..-.+++.. ..++++..+-+|-
T Consensus 172 ARALa~~P~iLLl---DEPtsaLD~~~~~~i~~~l~~l~~~~~~T~i~VT 218 (269)
T cd03294 172 ARALAVDPDILLM---DEAFSALDPLIRREMQDELLRLQAELQKTIVFIT 218 (269)
T ss_pred HHHHHCCCCEEEE---CCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEC
T ss_conf 9998639989997---5875425999999999999999997499999999
No 80
>PRK04328 hypothetical protein; Provisional
Probab=86.57 E-value=0.21 Score=29.27 Aligned_cols=53 Identities=28% Similarity=0.397 Sum_probs=34.8
Q ss_pred CEEEEEEECCCCCCCCCCCCCCCEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCH
Q ss_conf 702799833543111222478861330311021567412345553211013583335135887530110
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSASCRFGT 286 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d~~r~LigDDehgW~d~gvfn~EgGcYaK~i~Ls~~~EP~I~~aa~~~~a 286 (509)
+.+.|..|-+|||||||+.. +--+|+-+=|.++|. .+.+ ...++.+.+..+|-
T Consensus 24 gs~~Lv~G~pGtGKT~la~q------------Fl~~g~~~GE~~lyi---s~eE-~~~~l~~~~~~~G~ 76 (250)
T PRK04328 24 RNVVLLSGGPGTGKSIFSQQ------------FLWNGLQMGEPGIYV---ALEE-HPVQVRRNMAQFGW 76 (250)
T ss_pred CEEEEEEECCCCCHHHHHHH------------HHHHHHHCCCCEEEE---EEEC-CHHHHHHHHHHCCC
T ss_conf 96999982899998999999------------999998769977999---9727-99999999998099
No 81
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=86.55 E-value=0.29 Score=28.35 Aligned_cols=45 Identities=16% Similarity=0.138 Sum_probs=31.1
Q ss_pred CCCCCCCCCCEEEHHHCCCCCCCCHHHHHHH---HHHHHHHHCCEEEEEEC
Q ss_conf 2000125653121001050015683153899---99999881980999816
Q gi|254780826|r 371 TEKGVLKPEATFSACFGAPFMPRDPVQYGNI---LKDYIVKYCVDCWLVNT 418 (509)
Q Consensus 371 te~g~~ep~~tfs~cFg~PF~~~~p~~ya~l---l~~~i~~~~~~vyLvNT 418 (509)
.-+-+.+|.-.+- -+||--+.|..-.++ |.+..++.++.+-+|--
T Consensus 142 ARAl~~~P~llll---DEP~s~LD~~~~~~i~~~l~~l~~~~~~T~i~VTH 189 (232)
T cd03300 142 ARALVNEPKVLLL---DEPLGALDLKLRKDMQLELKRLQKELGITFVFVTH 189 (232)
T ss_pred HHHHHCCCCEEEE---CCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECC
T ss_conf 9998659999998---08876469999999999999999985999999999
No 82
>PRK12288 ribosome-associated GTPase; Reviewed
Probab=86.55 E-value=0.47 Score=26.99 Aligned_cols=35 Identities=26% Similarity=0.407 Sum_probs=25.5
Q ss_pred CCEEEEECCCCCCC--------CCCEEEEEEECCCCCCCCCCC
Q ss_conf 78799312453477--------787027998335431112224
Q gi|254780826|r 202 RGIMPMHCSINMDK--------EKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 202 ~g~lpmHcsan~~~--------~~~d~alfFGLSGTGKTTLS~ 236 (509)
-|+=.+..|+..+. -.+.+++|.|-||.|||||--
T Consensus 183 lGY~v~~~Sa~~~~gl~~L~~~L~~ktsvf~GqSGVGKSSLiN 225 (344)
T PRK12288 183 IGYRVLMVSSHTGEGLEPLEAALTGRISIFVGQSGVGKSSLIN 225 (344)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHCCCEEEEEECCCCCHHHHHH
T ss_conf 7973999736886289999998767859998068767888876
No 83
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=86.53 E-value=0.28 Score=28.51 Aligned_cols=21 Identities=33% Similarity=0.469 Sum_probs=17.0
Q ss_pred CCEEEEEEECCCCCCCCCCCC
Q ss_conf 870279983354311122247
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~d 237 (509)
.++....-|.||+|||||-.-
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLni 50 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNL 50 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHH
T ss_conf 998999989999989999999
No 84
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=86.53 E-value=0.3 Score=28.28 Aligned_cols=20 Identities=40% Similarity=0.639 Sum_probs=16.7
Q ss_pred CCEEEEEEECCCCCCCCCCC
Q ss_conf 87027998335431112224
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~ 236 (509)
.+....+.|.||+|||||-.
T Consensus 25 ~Ge~~~iiG~SGsGKSTll~ 44 (227)
T cd03260 25 KGEITALIGPSGCGKSTLLR 44 (227)
T ss_pred CCCEEEEECCCCCCHHHHHH
T ss_conf 99899999999981999999
No 85
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=86.51 E-value=0.21 Score=29.35 Aligned_cols=27 Identities=37% Similarity=0.522 Sum_probs=19.3
Q ss_pred CCCCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 453477787027998335431112224
Q gi|254780826|r 210 SINMDKEKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 210 san~~~~~~d~alfFGLSGTGKTTLS~ 236 (509)
+|+.-++-=|-.||+|..|.|||||..
T Consensus 43 Aak~r~e~ldH~Ll~GPPGlGKTTLA~ 69 (328)
T PRK00080 43 AAKKRGEALDHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred HHHHCCCCCCCEEEECCCCCCHHHHHH
T ss_conf 999649998805765889988999999
No 86
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=86.44 E-value=0.29 Score=28.35 Aligned_cols=45 Identities=16% Similarity=0.219 Sum_probs=29.5
Q ss_pred CCCCCCCCCCEEEHHHCCCCCCCCHHHHHHHHH---HHHHHHCCEEEEEEC
Q ss_conf 200012565312100105001568315389999---999881980999816
Q gi|254780826|r 371 TEKGVLKPEATFSACFGAPFMPRDPVQYGNILK---DYIVKYCVDCWLVNT 418 (509)
Q Consensus 371 te~g~~ep~~tfs~cFg~PF~~~~p~~ya~ll~---~~i~~~~~~vyLvNT 418 (509)
.-+=+.+|.-.+ +-+||--+.|....+++. +..++.+..+-+|--
T Consensus 141 ARAl~~~P~lll---lDEP~s~LD~~~~~~i~~~l~~l~~~~~~T~i~vTH 188 (235)
T cd03299 141 ARALVVNPKILL---LDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTH 188 (235)
T ss_pred HHHHHCCCCEEE---EECCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECC
T ss_conf 999973899899---928876469999999999999999982999999878
No 87
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein; InterPro: IPR005968 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Thiamine pyrophosphate (TPP) is a required cofactor synthesized de novo in Salmonella typhimurium. The primary role for TPP is in central metabolism as an electron carrier and nucleophile for such enzymes as pyruvate dehydrogenase (1.2.4.1 from EC), acetolactate synthase (4.1.3.18 from EC), and alpha-ketoglutarate dehydrogenase (1.2.4.2 from EC). Despite its importance in cellular physiology, neither the de novo biosynthetic pathway nor the salvage systems for thiamine are fully understood in any organism. The model describes thiamine ABC transporter, ATP-binding protein, believed to be involved in the specific translocation of thiamine and its phosphoesters across the inner membrane The protein belongs to the larger ABC transport system which consists of at least three components: the inner membrane permease; thiamine binding protein and an ATP-binding subunit. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. It has been experimentally demonstrated that mutants in the various steps in the de novo synthesis of thiamine and its biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate or thiamine pyrophosphate. ; GO: 0005524 ATP binding, 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=86.41 E-value=0.32 Score=28.12 Aligned_cols=33 Identities=30% Similarity=0.555 Sum_probs=25.8
Q ss_pred CCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCC
Q ss_conf 07879931245347778702799833543111222
Q gi|254780826|r 201 ERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLS 235 (509)
Q Consensus 201 ~~g~lpmHcsan~~~~~~d~alfFGLSGTGKTTLS 235 (509)
+-..+||.=+.+|. +| +-....|.||-||+||=
T Consensus 9 ~y~hlpm~F~L~V~-~G-e~VAi~GpSGAGKSTLL 41 (213)
T TIGR01277 9 EYKHLPMEFDLSVE-DG-ERVAILGPSGAGKSTLL 41 (213)
T ss_pred CCCCCCEEEECCCC-CC-CEEEEECCCCCCHHHHH
T ss_conf 23567404504130-17-76888758986278898
No 88
>PRK07261 topology modulation protein; Provisional
Probab=86.39 E-value=0.35 Score=27.87 Aligned_cols=35 Identities=26% Similarity=0.298 Sum_probs=26.3
Q ss_pred EEEEECCCCCCCCCCCC----CCCEEEECCCEEECCCCC
Q ss_conf 79983354311122247----886133031102156741
Q gi|254780826|r 221 ALFFGLSGTGKTTLSAS----VDRFLIGDDEHGWSKEGV 255 (509)
Q Consensus 221 alfFGLSGTGKTTLS~d----~~r~LigDDehgW~d~gv 255 (509)
.+..|-||+|||||+.. -+-.++.=|..-|.++.+
T Consensus 3 I~IiG~sGsGKSTlAr~L~~~~~ip~~~LD~l~w~p~w~ 41 (171)
T PRK07261 3 IAIIGYSGSGKSTLARFLGQHYNCPVLHLDQLHFSSNWQ 41 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEECCEEECCCCE
T ss_conf 999889998689999999998797979702278889998
No 89
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=86.34 E-value=0.26 Score=28.63 Aligned_cols=21 Identities=43% Similarity=0.718 Sum_probs=17.5
Q ss_pred EEEEEEECCCCCCCCCCCCCC
Q ss_conf 027998335431112224788
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSASVD 239 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d~~ 239 (509)
...+++|.+|||||||...=.
T Consensus 20 ~~ill~GppGtGKT~la~~ia 40 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIA 40 (151)
T ss_pred CEEEEECCCCCCHHHHHHHHH
T ss_conf 808998999988659999999
No 90
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=86.28 E-value=0.15 Score=30.27 Aligned_cols=19 Identities=37% Similarity=0.597 Sum_probs=16.1
Q ss_pred CEEEEEEECCCCCCCCCCC
Q ss_conf 7027998335431112224
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~ 236 (509)
+.....-|-||+|||||-.
T Consensus 28 Ge~i~IvG~sGsGKSTLl~ 46 (234)
T cd03251 28 GETVALVGPSGSGKSTLVN 46 (234)
T ss_pred CCEEEEECCCCCHHHHHHH
T ss_conf 9999999899982999999
No 91
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein; InterPro: IPR011924 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents LolD, a member of the ABC transporter family. LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on the residue immediately following the modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. Excluded from this entry are homologs from the archaeal genus Methanosarcina .; GO: 0005524 ATP binding, 0006810 transport, 0016020 membrane.
Probab=86.01 E-value=0.32 Score=28.13 Aligned_cols=20 Identities=40% Similarity=0.632 Sum_probs=17.2
Q ss_pred CCEEEEEEECCCCCCCCCCC
Q ss_conf 87027998335431112224
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~ 236 (509)
.++.+..-|-||+|||||=+
T Consensus 30 ~GE~~~IvG~SGSGKSTLLH 49 (221)
T TIGR02211 30 KGEIVAIVGSSGSGKSTLLH 49 (221)
T ss_pred CCCEEEEECCCCCCHHHHHH
T ss_conf 66337987367871689999
No 92
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transport system, ATP-binding protein component. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=85.81 E-value=0.33 Score=28.01 Aligned_cols=19 Identities=42% Similarity=0.611 Sum_probs=16.1
Q ss_pred CCCEEEEEEECCCCCCCCCC
Q ss_conf 78702799833543111222
Q gi|254780826|r 216 EKEDVALFFGLSGTGKTTLS 235 (509)
Q Consensus 216 ~~~d~alfFGLSGTGKTTLS 235 (509)
+| ....++|.||.|||||-
T Consensus 29 ~G-e~~~llGpSG~GKtTlL 47 (353)
T TIGR03265 29 KG-EFVCLLGPSGCGKTTLL 47 (353)
T ss_pred CC-CEEEEECCCCCHHHHHH
T ss_conf 99-99999999953599999
No 93
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=85.75 E-value=0.14 Score=30.55 Aligned_cols=71 Identities=23% Similarity=0.307 Sum_probs=33.4
Q ss_pred CCEEEEEEECCCCCCCCCCCCCCCEEEECCCEE-ECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHCCCEE
Q ss_conf 870279983354311122247886133031102-15674123455532110135833351358875301103124005
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSASVDRFLIGDDEHG-WSKEGVFNFEGGCYAKSINLSKETEPEIFSASCRFGTVLENVVV 293 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~d~~r~LigDDehg-W~d~gvfn~EgGcYaK~i~Ls~~~EP~I~~aa~~~~ailENV~~ 293 (509)
.+....+-|.||+|||||-.-=-+.+.-+...+ +++.-+..+..--+.+.+++-. -+|.+|+ ++|.||+.+
T Consensus 28 ~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~-Q~~~lf~-----~Ti~~Ni~~ 99 (229)
T cd03254 28 PGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVL-QDTFLFS-----GTIMENIRL 99 (229)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEEEEC-CCCEECC-----CCHHHHHHC
T ss_conf 99999999999980999999996686678738999999954189999963289990-3898757-----459998405
No 94
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=85.55 E-value=0.31 Score=28.22 Aligned_cols=63 Identities=21% Similarity=0.381 Sum_probs=32.5
Q ss_pred CEEEEEEECCCCCCCCCCCC------CC--CEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHC
Q ss_conf 70279983354311122247------88--61330311021567412345553211013583335135887530110312
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS------VD--RFLIGDDEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSASCRFGTVLE 289 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d------~~--r~LigDDehgW~d~gvfn~EgGcYaK~i~Ls~~~EP~I~~aa~~~~ailE 289 (509)
++...+-|-||+|||||..= |. +.+++ .--+-.+.-..|.|.|++=+ -||.+|+ |++.|
T Consensus 491 Ge~vaIvG~sGsGKSTL~kll~Gl~~p~~G~i~id-------g~~~~~~~~~~~r~~i~~v~-Q~~~lf~-----gTi~e 557 (694)
T TIGR03375 491 GEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLD-------GVDIRQIDPADLRRNIGYVP-QDPRLFY-----GTLRD 557 (694)
T ss_pred CCEEEEEECCCCCHHHHHHHHCCCCCCCCCEEEEC-------CEECCCCCHHHHHHHCEEEC-CCCCCCC-----CCHHH
T ss_conf 97899980589878899998556758998879989-------85425499999973021357-6771107-----46999
Q ss_pred CCEE
Q ss_conf 4005
Q gi|254780826|r 290 NVVV 293 (509)
Q Consensus 290 NV~~ 293 (509)
|..+
T Consensus 558 Ni~~ 561 (694)
T TIGR03375 558 NIAL 561 (694)
T ss_pred HHHC
T ss_conf 9841
No 95
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=85.51 E-value=0.19 Score=29.57 Aligned_cols=71 Identities=18% Similarity=0.352 Sum_probs=33.5
Q ss_pred CEEEEEEECCCCCCCCCCCCCCCEEEECCCEE-ECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHCCCEEC
Q ss_conf 70279983354311122247886133031102-156741234555321101358333513588753011031240057
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSASVDRFLIGDDEHG-WSKEGVFNFEGGCYAKSINLSKETEPEIFSASCRFGTVLENVVVD 294 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d~~r~LigDDehg-W~d~gvfn~EgGcYaK~i~Ls~~~EP~I~~aa~~~~ailENV~~d 294 (509)
+....+.|-||+|||||-.==.+.+--+.... ++..-+..+...-+.+.+++-+. +|.+|+ ++|.||+.+-
T Consensus 28 G~~vaivG~sGsGKSTll~ll~gl~~p~~G~I~i~g~di~~~~~~~~r~~i~~v~Q-~~~lf~-----~Ti~eNi~~g 99 (237)
T cd03252 28 GEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQ-ENVLFN-----RSIRDNIALA 99 (237)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHCEEEEC-CCCCCC-----CCHHHHHHCC
T ss_conf 99999999999859999999967765798789999999551899999860189958-771557-----8289887238
No 96
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=85.38 E-value=0.18 Score=29.74 Aligned_cols=21 Identities=33% Similarity=0.436 Sum_probs=17.0
Q ss_pred CCEEEEEEECCCCCCCCCCCC
Q ss_conf 870279983354311122247
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~d 237 (509)
.+....+.|-||.|||||-.-
T Consensus 27 ~Ge~i~ivG~sGsGKSTLl~l 47 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKL 47 (171)
T ss_pred CCCEEEEECCCCCHHHHHHHH
T ss_conf 998999999999839999999
No 97
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=85.35 E-value=0.32 Score=28.05 Aligned_cols=46 Identities=20% Similarity=0.171 Sum_probs=30.2
Q ss_pred CCCCCCCCCCCCEEEHHHCCCCCCCCHHHHHHH---HHHHHHHHCCEEEEEE
Q ss_conf 662000125653121001050015683153899---9999988198099981
Q gi|254780826|r 369 AGTEKGVLKPEATFSACFGAPFMPRDPVQYGNI---LKDYIVKYCVDCWLVN 417 (509)
Q Consensus 369 agte~g~~ep~~tfs~cFg~PF~~~~p~~ya~l---l~~~i~~~~~~vyLvN 417 (509)
|=.-+-+.+|...+- -+||=.+.|..-.++ |.+..+++++.+-+|-
T Consensus 141 aiARAL~~~P~llLl---DEP~saLD~~~~~~i~~~l~~l~~~~~~t~i~VT 189 (214)
T cd03297 141 ALARALAAQPELLLL---DEPFSALDRALRLQLLPELKQIKKNLNIPVIFVT 189 (214)
T ss_pred HHHHHHHCCCCEEEE---ECCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEC
T ss_conf 999998719999998---0887666999999999999999998599899998
No 98
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=85.35 E-value=0.47 Score=26.96 Aligned_cols=46 Identities=24% Similarity=0.246 Sum_probs=31.9
Q ss_pred CCCCCCCCCCCCEEEHHHCCCCCCCCHHHHHHHH---HHHHHHHCCEEEEEEC
Q ss_conf 6620001256531210010500156831538999---9999881980999816
Q gi|254780826|r 369 AGTEKGVLKPEATFSACFGAPFMPRDPVQYGNIL---KDYIVKYCVDCWLVNT 418 (509)
Q Consensus 369 agte~g~~ep~~tfs~cFg~PF~~~~p~~ya~ll---~~~i~~~~~~vyLvNT 418 (509)
|=.-+-+.+|.-.+- -+|+=.+.|..-.+++ .+..+++++.+-+| |
T Consensus 146 aIARALv~~P~illl---DEPts~LDp~~~~~i~~li~~l~~~~g~T~i~v-T 194 (235)
T cd03261 146 ALARALALDPELLLY---DEPTAGLDPIASGVIDDLIRSLKKELGLTSIMV-T 194 (235)
T ss_pred HHHHHHHCCCCEEEE---ECCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEE-C
T ss_conf 999998548998998---088664798999999999999999729999998-9
No 99
>COG0645 Predicted kinase [General function prediction only]
Probab=85.29 E-value=0.3 Score=28.23 Aligned_cols=21 Identities=38% Similarity=0.643 Sum_probs=16.8
Q ss_pred EEEEEECCCCCCCCCCCCCCC
Q ss_conf 279983354311122247886
Q gi|254780826|r 220 VALFFGLSGTGKTTLSASVDR 240 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS~d~~r 240 (509)
-.+.+||||||||||...=.+
T Consensus 3 l~l~~Gl~GsGKstlA~~l~~ 23 (170)
T COG0645 3 LVLVGGLPGSGKSTLARGLAE 23 (170)
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 799725888658688789885
No 100
>TIGR01187 potA polyamine ABC transporter, ATP-binding protein; InterPro: IPR005893 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family comprises the spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belongs to the larger ATP-Binding Cassette (ABC) transporter superfamily. Polyamines like spermidine and putrescine play a vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).; GO: 0015417 polyamine-transporting ATPase activity, 0015846 polyamine transport, 0016020 membrane.
Probab=85.28 E-value=0.17 Score=29.88 Aligned_cols=13 Identities=62% Similarity=0.853 Sum_probs=10.9
Q ss_pred EEECCCCCCCCCC
Q ss_conf 9833543111222
Q gi|254780826|r 223 FFGLSGTGKTTLS 235 (509)
Q Consensus 223 fFGLSGTGKTTLS 235 (509)
+.|.||.|||||-
T Consensus 1 LLGpSGcGKTTlL 13 (331)
T TIGR01187 1 LLGPSGCGKTTLL 13 (331)
T ss_pred CCCCCCCCHHHHH
T ss_conf 9788887479999
No 101
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=85.26 E-value=0.32 Score=28.10 Aligned_cols=21 Identities=38% Similarity=0.629 Sum_probs=13.6
Q ss_pred EEEEEEECCCCCCCCCCCCCC
Q ss_conf 027998335431112224788
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSASVD 239 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d~~ 239 (509)
-+..|-||||+|||||...=.
T Consensus 393 ~tiwlTGLsgsGKsTiA~al~ 413 (568)
T PRK05537 393 FTVFFTGLSGAGKSTIAKALM 413 (568)
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 499984578887769999999
No 102
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=85.21 E-value=0.38 Score=27.61 Aligned_cols=40 Identities=18% Similarity=0.086 Sum_probs=24.1
Q ss_pred CCCCCCCEEEHHHCCCCCCCCHHHHHHH---HHHHHHHHCCEEEEE
Q ss_conf 0125653121001050015683153899---999998819809998
Q gi|254780826|r 374 GVLKPEATFSACFGAPFMPRDPVQYGNI---LKDYIVKYCVDCWLV 416 (509)
Q Consensus 374 g~~ep~~tfs~cFg~PF~~~~p~~ya~l---l~~~i~~~~~~vyLv 416 (509)
=+.+|.-.+-- +|+--+.|....++ |.+.-+++++.+-+|
T Consensus 160 L~~~P~illlD---EPTs~LD~~~~~~i~~~l~~l~~~~g~tvi~v 202 (233)
T PRK11629 160 LVNNPRLVLAD---EPTGNLDARNADSIFQLLGELNRLQGTAFLVV 202 (233)
T ss_pred HHCCCCEEEEE---CCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 96599999992---88887999999999999999999709899998
No 103
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=85.19 E-value=0.37 Score=27.69 Aligned_cols=21 Identities=38% Similarity=0.558 Sum_probs=17.4
Q ss_pred CCEEEEEEECCCCCCCCCCCC
Q ss_conf 870279983354311122247
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~d 237 (509)
.+....+.|.||.|||||-.-
T Consensus 30 ~Ge~~~iiG~sGsGKSTLl~~ 50 (228)
T cd03257 30 KGETLGLVGESGSGKSTLARA 50 (228)
T ss_pred CCCEEEEECCCCCHHHHHHHH
T ss_conf 998999999999869999999
No 104
>TIGR00630 uvra excinuclease ABC, A subunit; InterPro: IPR004602 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products . The UvrC protein contain 4 conserved regions: a central region which interact with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0009380 excinuclease repair complex.
Probab=85.10 E-value=0.35 Score=27.84 Aligned_cols=32 Identities=16% Similarity=-0.026 Sum_probs=13.2
Q ss_pred CHHHHHHHHHCCCCCCCCCCCCCCCCEEEECC
Q ss_conf 10778999751254211134445661276458
Q gi|254780826|r 119 AWHSLFIRNLLKHKEDLGAVPNMMSLQVVVLP 150 (509)
Q Consensus 119 AwhaLF~~nmFirp~~~e~~~~~pd~tI~~aP 150 (509)
+...+|..+---..-....+.-+|...=+|.|
T Consensus 263 ~~~~~f~~~~~c~~~~~s~~eLePRlFSFNSP 294 (956)
T TIGR00630 263 KSELLFSKNAACPECGFSLEELEPRLFSFNSP 294 (956)
T ss_pred HHHHHHHHHCCCCCCCCCHHCCCCCCCCCCCC
T ss_conf 46666555337420462210036210332675
No 105
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=85.09 E-value=0.43 Score=27.24 Aligned_cols=23 Identities=39% Similarity=0.723 Sum_probs=18.1
Q ss_pred CEEEEEEECCCCCCCCCCCCCCC
Q ss_conf 70279983354311122247886
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSASVDR 240 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d~~r 240 (509)
.-|.-|=||||.||||+...=.+
T Consensus 23 ~~viW~TGLSGsGKSTiA~ale~ 45 (197)
T COG0529 23 GAVIWFTGLSGSGKSTIANALEE 45 (197)
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
T ss_conf 85999646888878799999999
No 106
>pfam00004 AAA ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Probab=85.07 E-value=0.28 Score=28.45 Aligned_cols=16 Identities=56% Similarity=0.899 Sum_probs=13.9
Q ss_pred EEEEECCCCCCCCCCC
Q ss_conf 7998335431112224
Q gi|254780826|r 221 ALFFGLSGTGKTTLSA 236 (509)
Q Consensus 221 alfFGLSGTGKTTLS~ 236 (509)
.||+|.+|||||++..
T Consensus 1 iLl~GppGtGKT~~a~ 16 (131)
T pfam00004 1 LLLYGPPGTGKTTLAK 16 (131)
T ss_pred CEEECCCCCCHHHHHH
T ss_conf 9878999999999999
No 107
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=85.04 E-value=0.38 Score=27.57 Aligned_cols=41 Identities=10% Similarity=0.157 Sum_probs=24.4
Q ss_pred CCCCCCCEEEHHHCCCCCCCCHHHHHHHHH---HHHHHHCCEEEEEE
Q ss_conf 012565312100105001568315389999---99988198099981
Q gi|254780826|r 374 GVLKPEATFSACFGAPFMPRDPVQYGNILK---DYIVKYCVDCWLVN 417 (509)
Q Consensus 374 g~~ep~~tfs~cFg~PF~~~~p~~ya~ll~---~~i~~~~~~vyLvN 417 (509)
-+.+|.-.+- -+|+--+.|..-.+++. +.-++++..+-+|-
T Consensus 159 L~~~P~ill~---DEPts~LD~~~~~~i~~ll~~l~~~~g~Tii~vt 202 (241)
T cd03256 159 LMQQPKLILA---DEPVASLDPASSRQVMDLLKRINREEGITVIVSL 202 (241)
T ss_pred HHCCCCEEEE---CCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 8559998996---2876658999999999999999985198999995
No 108
>TIGR01842 type_I_sec_PrtD type I secretion system ATPase; InterPro: IPR010128 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0015031 protein transport, 0016021 integral to membrane.
Probab=84.86 E-value=0.41 Score=27.39 Aligned_cols=165 Identities=22% Similarity=0.335 Sum_probs=88.3
Q ss_pred CEEEEEEECCCCCCCCCCCCCCCEEEECCCEEEC-CCCCCCCCCC--------CCCCCCCCCCCCCHHHHHHHHHCCHHH
Q ss_conf 7027998335431112224788613303110215-6741234555--------321101358333513588753011031
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSASVDRFLIGDDEHGWS-KEGVFNFEGG--------CYAKSINLSKETEPEIFSASCRFGTVL 288 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d~~r~LigDDehgW~-d~gvfn~EgG--------cYaK~i~Ls~~~EP~I~~aa~~~~ail 288 (509)
+++-..-|.||||||||. |.|+| .|. ..|..++-|- -+=|.|++=|. .=| .-.|||-
T Consensus 356 Ge~laIIGPSgSGKStLa----R~~vG----~W~~~~G~VRLDGadl~qWD~e~lG~~iGYLPQ-dvE-----LF~GTva 421 (556)
T TIGR01842 356 GEALAIIGPSGSGKSTLA----RILVG----IWPPASGSVRLDGADLKQWDRETLGKHIGYLPQ-DVE-----LFSGTVA 421 (556)
T ss_pred CCEEEEECCCCCCHHHHH----HHHHH----CCCCCCCCEEEEHHHHHCCCHHHCCCCCCCCCC-CCC-----CCCCCHH
T ss_conf 745888747865258898----78872----101356533640334402375365880154798-505-----0767676
Q ss_pred CCCEECCCCCEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHCC-HHHHHHHHHHHCCCC
Q ss_conf 2400578981111478867670589860004310002567887269996026778876044418-588999997423245
Q gi|254780826|r 289 ENVVVDECGIPNFKDSSVTENTRAAYPLNFIHNHAPQSIGKHPKHVIMLAADAFGVLPPVAYLN-PEKAVYYFLSGYTAK 367 (509)
Q Consensus 289 ENV~~d~~~~~df~d~s~TeNtR~~yp~~~i~n~~~~~~~~~p~~iifl~~d~~gvlPpvsklt-~~qa~~~F~sGyT~k 367 (509)
||.. |.+++.+ |..| =--|||. -..-.--|=-||=+.
T Consensus 422 ~NIA-----------------------------RF~en~d--~~~i-----------ieAAklAGvHElIl~lP~GYDT~ 459 (556)
T TIGR01842 422 ENIA-----------------------------RFGENAD--PEKI-----------IEAAKLAGVHELILRLPDGYDTD 459 (556)
T ss_pred HHCC-----------------------------CCCCCCC--HHHH-----------HHHHHHHCHHHHHHCCCCCCCCC
T ss_conf 4024-----------------------------4688788--7899-----------99997603035751696885443
Q ss_pred CC--CCC--CCCCCCCCEEEHHHCCCCCCC--------CHHHHHHHHHH--HHHHHCCEEEEEECCCCCCCCCCCCCCCH
Q ss_conf 66--620--001256531210010500156--------83153899999--99881980999816746887688732078
Q gi|254780826|r 368 VA--GTE--KGVLKPEATFSACFGAPFMPR--------DPVQYGNILKD--YIVKYCVDCWLVNTGWTAGSYGEGYRMPL 433 (509)
Q Consensus 368 ~a--gte--~g~~ep~~tfs~cFg~PF~~~--------~p~~ya~ll~~--~i~~~~~~vyLvNTGw~Gg~~g~G~Ri~l 433 (509)
++ |.. -|...+.+.=-+-||+||+.- .-.=..-|..- .+|+-++.|=+|- +|.++
T Consensus 460 iG~~G~~LSGGQRQRIaLARAlyG~P~lvvLDEPNsNLD~~GE~AL~~Ai~~lK~rg~tvv~it-----------HRp~l 528 (556)
T TIGR01842 460 IGEGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVIT-----------HRPSL 528 (556)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEE-----------CHHHH
T ss_conf 1377777861468999999987179837873288987661789999999999986797289984-----------10689
Q ss_pred HHHHHHHHHHHCCCCC
Q ss_conf 8999999999849602
Q gi|254780826|r 434 SVTRALLKAIFDNSIK 449 (509)
Q Consensus 434 ~~Tr~ii~ai~~g~l~ 449 (509)
=..-..|=.+.+|.+.
T Consensus 529 L~~vDkIl~l~dG~~~ 544 (556)
T TIGR01842 529 LGLVDKILVLQDGRLK 544 (556)
T ss_pred HHHHHHHHHHHCCHHH
T ss_conf 9999999998407163
No 109
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=84.75 E-value=0.39 Score=27.49 Aligned_cols=57 Identities=19% Similarity=0.169 Sum_probs=34.6
Q ss_pred HHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHCCCCCCCCHHHHHHH---HHHHHHHHCCEEEEEEC
Q ss_conf 44185889999974232456662000125653121001050015683153899---99999881980999816
Q gi|254780826|r 349 AYLNPEKAVYYFLSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNI---LKDYIVKYCVDCWLVNT 418 (509)
Q Consensus 349 sklt~~qa~~~F~sGyT~k~agte~g~~ep~~tfs~cFg~PF~~~~p~~ya~l---l~~~i~~~~~~vyLvNT 418 (509)
..||-.|..---+ .-+-+.+|.-.+-- +|+--+.|..-.++ |.+..++.+..+-+| |
T Consensus 130 ~~LSGGqkQRvai---------ARaL~~~P~llllD---EPts~LD~~~~~~i~~~l~~l~~~~g~tii~v-T 189 (220)
T cd03293 130 HQLSGGMRQRVAL---------ARALAVDPDVLLLD---EPFSALDALTREQLQEELLDIWRETGKTVLLV-T 189 (220)
T ss_pred HHCCHHHHHHHHH---------HHHHHCCCCEEEEE---CCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEE-C
T ss_conf 1299999999999---------99986699999980---88765699999999999999998519999998-8
No 110
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=84.63 E-value=0.41 Score=27.40 Aligned_cols=20 Identities=40% Similarity=0.549 Sum_probs=16.2
Q ss_pred CCCEEEEEEECCCCCCCCCCC
Q ss_conf 787027998335431112224
Q gi|254780826|r 216 EKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 216 ~~~d~alfFGLSGTGKTTLS~ 236 (509)
+| ....+.|.||.|||||--
T Consensus 30 ~G-E~~~llGpSG~GKTTlLr 49 (362)
T TIGR03258 30 AG-ELLALIGKSGCGKTTLLR 49 (362)
T ss_pred CC-CEEEEECCCCCHHHHHHH
T ss_conf 99-899999999745999999
No 111
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=84.56 E-value=0.41 Score=27.38 Aligned_cols=45 Identities=13% Similarity=0.111 Sum_probs=31.6
Q ss_pred CCCCCCCCCCEEEHHHCCCCCCCCHHHHHHHHHH---HHHHHCCEEEEEEC
Q ss_conf 2000125653121001050015683153899999---99881980999816
Q gi|254780826|r 371 TEKGVLKPEATFSACFGAPFMPRDPVQYGNILKD---YIVKYCVDCWLVNT 418 (509)
Q Consensus 371 te~g~~ep~~tfs~cFg~PF~~~~p~~ya~ll~~---~i~~~~~~vyLvNT 418 (509)
.-+=+.+|.-.+- -+||--+.|....+++.. ..++.++.+-+|--
T Consensus 148 ARAl~~~P~vlll---DEP~s~LD~~~~~~i~~~l~~l~~e~~~T~i~vTH 195 (239)
T cd03296 148 ARALAVEPKVLLL---DEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTH 195 (239)
T ss_pred HHHHHCCCCEEEE---CCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECC
T ss_conf 9987649998997---38866469999999999999999985998999988
No 112
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=84.54 E-value=0.39 Score=27.55 Aligned_cols=33 Identities=27% Similarity=0.471 Sum_probs=22.3
Q ss_pred CCEEEEEEECCCCCCCCCC--------CCCCCEEEECCCEE
Q ss_conf 8702799833543111222--------47886133031102
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLS--------ASVDRFLIGDDEHG 249 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS--------~d~~r~LigDDehg 249 (509)
.+.-.++.|.||.|||||- .+..+.+|++...-
T Consensus 28 ~Gef~vllGPSGcGKSTlLr~IAGLe~p~~G~I~i~g~~vt 68 (338)
T COG3839 28 DGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVT 68 (338)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECC
T ss_conf 79799998999888899999996887788715999999999
No 113
>pfam03193 DUF258 Protein of unknown function, DUF258.
Probab=84.53 E-value=0.58 Score=26.37 Aligned_cols=35 Identities=29% Similarity=0.338 Sum_probs=24.0
Q ss_pred CCEEEEECCCCCCC--------CCCEEEEEEECCCCCCCCCCC
Q ss_conf 78799312453477--------787027998335431112224
Q gi|254780826|r 202 RGIMPMHCSINMDK--------EKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 202 ~g~lpmHcsan~~~--------~~~d~alfFGLSGTGKTTLS~ 236 (509)
-|+-.+.+|+..+. -.+.+++|.|-||.|||||--
T Consensus 11 lGy~v~~~S~~~~~g~~~L~~~l~~k~sv~~G~SGVGKSTLiN 53 (161)
T pfam03193 11 IGYEVLVVSAKTGEGIEELKPLLKGKTSVLAGQSGVGKSTLLN 53 (161)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCCHHHHHH
T ss_conf 7990899647998799999998679859998899988999998
No 114
>TIGR01969 minD_arch cell division ATPase MinD; InterPro: IPR010224 Proper placement of the bacterial cell division site requires the site-specific inactivation of other potential division sites. In Escherichia coli, selection of the correct mid-cell site is mediated by the MinC, MinD and MinE proteins. Several members of this family are found in archaeal genomes but their function is uncharacterised. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. This entry represents the archaeal MinD family. The exact roles of the various archaeal MinD homologs are unknown. .
Probab=84.50 E-value=0.39 Score=27.48 Aligned_cols=208 Identities=20% Similarity=0.222 Sum_probs=103.3
Q ss_pred ECCCCCCCCCCCC--------CCCEEEECCCEEECCCC-CCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHCCCEEC-
Q ss_conf 3354311122247--------88613303110215674-1234555321101358333513588753011031240057-
Q gi|254780826|r 225 GLSGTGKTTLSAS--------VDRFLIGDDEHGWSKEG-VFNFEGGCYAKSINLSKETEPEIFSASCRFGTVLENVVVD- 294 (509)
Q Consensus 225 GLSGTGKTTLS~d--------~~r~LigDDehgW~d~g-vfn~EgGcYaK~i~Ls~~~EP~I~~aa~~~~ailENV~~d- 294 (509)
|==||||||.||. .++.++-|-.----+=+ +++.|| ..+..++ ...-.|=++.=++.
T Consensus 8 GKGGtGKTT~tANLgVALA~~Gk~V~~~DADI~MANL~LiLgmE~------------~~VTLhD-VLAGeA~i~DAIY~g 74 (258)
T TIGR01969 8 GKGGTGKTTITANLGVALAKLGKKVLVLDADITMANLELILGMED------------KPVTLHD-VLAGEADIKDAIYEG 74 (258)
T ss_pred CCCCCCHHHEEEHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCC------------CCCCCCC-CCCCCCCHHHHCCCC
T ss_conf 788986140000077889860976899946766776898844688------------8967522-134456100110028
Q ss_pred CCC-CEECCCCCCCCCEEEEEECCCCCCCCCCCCCC----CCCEEEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCCC
Q ss_conf 898-11114788676705898600043100025678----8726999602677887604441858899999742324566
Q gi|254780826|r 295 ECG-IPNFKDSSVTENTRAAYPLNFIHNHAPQSIGK----HPKHVIMLAADAFGVLPPVAYLNPEKAVYYFLSGYTAKVA 369 (509)
Q Consensus 295 ~~~-~~df~d~s~TeNtR~~yp~~~i~n~~~~~~~~----~p~~iifl~~d~~gvlPpvsklt~~qa~~~F~sGyT~k~a 369 (509)
+.| +-.. =+..+++++.++-..-.-+ --...=||.=|+ |.= |..+ |+.+.. +
T Consensus 75 p~GnV~V~---------PagvSLEg~rKA~~~~L~dV~~~i~~~~D~lLIDA----PAG--L~~~-a~~Al~-------~ 131 (258)
T TIGR01969 75 PEGNVKVI---------PAGVSLEGLRKADPDKLEDVLKEIIDDTDFLLIDA----PAG--LERD-AVTALA-------A 131 (258)
T ss_pred CCCCEEEE---------CCCCCHHHCCCCCHHHHHHHHHHHHCCCCEEEEEC----CCC--CCHH-HHHHHH-------H
T ss_conf 89844785---------06122100012683332899998720437788747----898--3378-999998-------6
Q ss_pred CCCCC-CCCCCCEEEHHHCCCCCCCCHHHHHHHHHHHHHHHCCEE--EEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 62000-125653121001050015683153899999998819809--998167468876887320788999999999849
Q gi|254780826|r 370 GTEKG-VLKPEATFSACFGAPFMPRDPVQYGNILKDYIVKYCVDC--WLVNTGWTAGSYGEGYRMPLSVTRALLKAIFDN 446 (509)
Q Consensus 370 gte~g-~~ep~~tfs~cFg~PF~~~~p~~ya~ll~~~i~~~~~~v--yLvNTGw~Gg~~g~G~Ri~l~~Tr~ii~ai~~g 446 (509)
++|.= |+-|+ .|+ .-.|=..+.-.++-|+++ -+||= ++ |=+-+.+|.=|+.|++.
T Consensus 132 a~elLLVvNPE--i~S-----------ItDaLK~k~va~~lGt~ilG~vlNR------v~---~~~tel~~~eiE~iLev 189 (258)
T TIGR01969 132 ADELLLVVNPE--ISS-----------ITDALKVKIVAEKLGTAILGVVLNR------VT---RDKTELGREEIEAILEV 189 (258)
T ss_pred CCCCEEEECCC--HHH-----------HHHHHHHHHHHHHCCCCEEEEEEEE------CC---CCCCCCCHHHHHHHHCC
T ss_conf 18664866765--446-----------7778899999876088324689960------23---66663788899988479
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCCHHHCCHHHHCCCHHHHHHHHHHHHH
Q ss_conf 60246606678877425620798996564976625998999999999999
Q gi|254780826|r 447 SIKSVPYRVDENFGFSVPLEVKGVDRKLLNPRDSWNDVEAYDQKMRELLL 496 (509)
Q Consensus 447 ~l~~~~~~~~~~f~l~iP~~~~gv~~~~l~P~~~w~d~~~Y~~~a~~L~~ 496 (509)
.+--+ -=.||.-- =-...|.|-=+.+|.. .=..||-+=|.+|+.
T Consensus 190 PVl~~-vPEDP~VR---~AAa~G~P~V~~~P~S--pAA~A~~eLA~~l~G 233 (258)
T TIGR01969 190 PVLGV-VPEDPEVR---RAAAFGEPVVVYSPNS--PAAQAFMELAAELAG 233 (258)
T ss_pred CEEEE-ECCCHHHH---HHHHCCCCEEEECCCC--HHHHHHHHHHHHHHC
T ss_conf 73898-56984344---5642485368847998--789999999999718
No 115
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=84.39 E-value=0.34 Score=27.95 Aligned_cols=17 Identities=41% Similarity=0.720 Sum_probs=15.1
Q ss_pred EEEEECCCCCCCCCCCC
Q ss_conf 79983354311122247
Q gi|254780826|r 221 ALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 221 alfFGLSGTGKTTLS~d 237 (509)
.+++|.||.||||++..
T Consensus 3 iiilG~pGaGK~T~A~~ 19 (178)
T COG0563 3 ILILGPPGAGKSTLAKK 19 (178)
T ss_pred EEEECCCCCCHHHHHHH
T ss_conf 99989999988999999
No 116
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=84.35 E-value=0.54 Score=26.57 Aligned_cols=46 Identities=28% Similarity=0.525 Sum_probs=31.7
Q ss_pred CCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCC--------CCCCEEEECCCEE
Q ss_conf 78799312453477787027998335431112224--------7886133031102
Q gi|254780826|r 202 RGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSA--------SVDRFLIGDDEHG 249 (509)
Q Consensus 202 ~g~lpmHcsan~~~~~~d~alfFGLSGTGKTTLS~--------d~~r~LigDDehg 249 (509)
-+.+||+-...+- .+ +.+...|.||.||+||-. .....+|.+++|.
T Consensus 11 y~~~~~~fdl~v~-~g-e~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t 64 (231)
T COG3840 11 YGHLPMRFDLTVP-AG-EIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHT 64 (231)
T ss_pred ECCCEEEEEEEEC-CC-CEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECC
T ss_conf 0750078887606-78-579997788865788999987424778745898572147
No 117
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=84.26 E-value=0.41 Score=27.39 Aligned_cols=19 Identities=47% Similarity=0.765 Sum_probs=16.6
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
...+++|.+||||||+...
T Consensus 3 ~~ill~G~~GsGKTtl~~~ 21 (148)
T smart00382 3 EVILIVGPPGSGKTTLARA 21 (148)
T ss_pred CEEEEECCCCHHHHHHHHH
T ss_conf 7899999997029999999
No 118
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=84.20 E-value=0.43 Score=27.23 Aligned_cols=58 Identities=16% Similarity=0.166 Sum_probs=35.7
Q ss_pred HHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHCCCCCCCCHHHHHHHHHH---HHHHHCCEEEEEECC
Q ss_conf 44185889999974232456662000125653121001050015683153899999---998819809998167
Q gi|254780826|r 349 AYLNPEKAVYYFLSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNILKD---YIVKYCVDCWLVNTG 419 (509)
Q Consensus 349 sklt~~qa~~~F~sGyT~k~agte~g~~ep~~tfs~cFg~PF~~~~p~~ya~ll~~---~i~~~~~~vyLvNTG 419 (509)
..||-.|.. ++|=.-+-+.+|...+- -+||-.+.|....++... ..++.+..+-+| |-
T Consensus 134 ~~LSGGqkQ---------RvaiARAl~~~P~ilLl---DEP~saLD~~~~~~i~~~l~~l~~~~~~T~i~v-TH 194 (242)
T cd03295 134 HELSGGQQQ---------RVGVARALAADPPLLLM---DEPFGALDPITRDQLQEEFKRLQQELGKTIVFV-TH 194 (242)
T ss_pred HHCCHHHHH---------HHHHHHHHHCCCCEEEE---CCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEE-CC
T ss_conf 668999999---------99999999629999998---187654698999999999999999759999999-98
No 119
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=84.16 E-value=3.2 Score=21.47 Aligned_cols=14 Identities=14% Similarity=0.235 Sum_probs=5.9
Q ss_pred CHHHHHHHHHHHHC
Q ss_conf 78899999999984
Q gi|254780826|r 432 PLSVTRALLKAIFD 445 (509)
Q Consensus 432 ~l~~Tr~ii~ai~~ 445 (509)
.++.+-+-|..++.
T Consensus 236 al~~~~~~V~evl~ 249 (281)
T COG2240 236 ALERATAAVYEVLQ 249 (281)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999999
No 120
>TIGR00955 3a01204 Pigment precourser permease; InterPro: IPR005284 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes different parts of a membrane-spanning permease system necessary for the transport of pigment precursor into pigment cells responsible for eye color. White protein dimerises with brown protein for the transport of guanine and with scarlet protein for the transport of tryptophan.; GO: 0006810 transport.
Probab=84.11 E-value=0.45 Score=27.10 Aligned_cols=35 Identities=29% Similarity=0.477 Sum_probs=22.3
Q ss_pred CCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 41078799312453477787027998335431112224
Q gi|254780826|r 199 FPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 199 lp~~g~lpmHcsan~~~~~~d~alfFGLSGTGKTTLS~ 236 (509)
.|+|..| |..+=+-+.| +..+..|-||.|||||=.
T Consensus 42 ~p~K~lL--~~vSG~a~~G-eLlA~mGsSGAGKTTLmn 76 (671)
T TIGR00955 42 VPRKHLL--KNVSGVAKPG-ELLAIMGSSGAGKTTLMN 76 (671)
T ss_pred CCCHHHH--HCCCEEECCC-EEEEEECCCCCCHHHHHH
T ss_conf 6520111--0352021067-068984787662689999
No 121
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=84.08 E-value=0.42 Score=27.32 Aligned_cols=20 Identities=45% Similarity=0.597 Sum_probs=16.5
Q ss_pred CEEEEEEECCCCCCCCCCCC
Q ss_conf 70279983354311122247
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d 237 (509)
+.+.+..|+||+|||||+.-
T Consensus 89 g~~~~~~gdsg~GKttllL~ 108 (402)
T COG3598 89 GYVSILYGDSGVGKTTLLLY 108 (402)
T ss_pred CEEEEEECCCCCCHHHHHHH
T ss_conf 70589844886237689999
No 122
>pfam09439 SRPRB Signal recognition particle receptor beta subunit. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase which anchors the alpha subunit to the endoplasmic reticulum membrane.
Probab=84.08 E-value=0.4 Score=27.46 Aligned_cols=19 Identities=32% Similarity=0.471 Sum_probs=16.4
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
-+.|+.||||.|||+|-..
T Consensus 4 ptvLllGl~~sGKT~Lf~~ 22 (181)
T pfam09439 4 PAVIIAGLCDSGKTSLFTL 22 (181)
T ss_pred CEEEEECCCCCCHHHHHHH
T ss_conf 8699986899989999999
No 123
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=83.90 E-value=0.19 Score=29.57 Aligned_cols=20 Identities=30% Similarity=0.541 Sum_probs=16.6
Q ss_pred CCEEEEEEECCCCCCCCCCC
Q ss_conf 87027998335431112224
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~ 236 (509)
.+....+-|.||.|||||-.
T Consensus 367 ~G~~vaiVG~SGsGKSTL~~ 386 (581)
T PRK11176 367 AGKTVALVGRSGSGKSTIAN 386 (581)
T ss_pred CCCEEECCCCCCCCHHHHHH
T ss_conf 99443122899986789999
No 124
>KOG4513 consensus
Probab=83.80 E-value=1.9 Score=22.99 Aligned_cols=82 Identities=26% Similarity=0.427 Sum_probs=54.0
Q ss_pred CCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEHHC------------------------CEEEEECCHHHHHHH--H
Q ss_conf 13444566127645887637422456666169977221------------------------935664136788877--8
Q gi|254780826|r 136 GAVPNMMSLQVVVLPDFSADPNRHGCCSETIIAVDLTA------------------------GLILIGGTSYAGEIK--K 189 (509)
Q Consensus 136 e~~~~~pd~tI~~aP~~~~~p~~~g~~Se~~i~in~~~------------------------k~~lI~GT~YaGEiK--K 189 (509)
+...+.|.|.|....+--.+| .++.|.+||.. ++-.++=|+|-||.| |
T Consensus 245 ~~De~L~p~vi~ge~Gr~~~~------DdtiifFnfRADRMr~ia~a~~~~~~d~~~r~~~p~i~~~gMtqYk~el~psk 318 (531)
T KOG4513 245 ANDEYLPPFVIVGERGRAVGP------DDTIIFFNFRADRMRMIAKALEYNDFDKFDRVRHPNIRYAGMTQYKGELKPSK 318 (531)
T ss_pred CCCCCCCCEEEECCCCCCCCC------CCEEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEHHHHCCCCCCCE
T ss_conf 874555876898887743698------87499986116889999998611566532211477643755013304457530
Q ss_pred HHH------HHHHHHCCCCCEEEEECCCCCCCCCCEEEEEEE
Q ss_conf 999------999862410787993124534777870279983
Q gi|254780826|r 190 SVF------TYLNHIFPERGIMPMHCSINMDKEKEDVALFFG 225 (509)
Q Consensus 190 siF------tvmny~lp~~g~lpmHcsan~~~~~~d~alfFG 225 (509)
.+| ..+.-+|..+|+--.||+.++- -+ -|+-||.
T Consensus 319 ~Lf~pp~i~~tlaE~La~~gv~~fhcaEteK-~a-HVTfFfN 358 (531)
T KOG4513 319 YLFSPPCIDRTLAEYLAHNGVRTFHCAETEK-FA-HVTFFFN 358 (531)
T ss_pred EEECCCCCCCHHHHHHHHCCCCEEEECCCCE-EE-EEEEEEC
T ss_conf 5425610110489998746832044202100-11-4899974
No 125
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=83.80 E-value=0.48 Score=26.94 Aligned_cols=20 Identities=45% Similarity=0.606 Sum_probs=16.5
Q ss_pred CCEEEEEEECCCCCCCCCCC
Q ss_conf 87027998335431112224
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~ 236 (509)
.+....+.|.||.|||||-.
T Consensus 26 ~Ge~~aliG~sGsGKSTLl~ 45 (248)
T PRK11264 26 PGEVVAIIGPSGSGKTTLLR 45 (248)
T ss_pred CCCEEEEECCCCCCHHHHHH
T ss_conf 99899999999980999999
No 126
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=83.67 E-value=0.53 Score=26.63 Aligned_cols=24 Identities=33% Similarity=0.570 Sum_probs=18.2
Q ss_pred CCEEEEEEECCCCCCCCCCCCCCC
Q ss_conf 870279983354311122247886
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSASVDR 240 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~d~~r 240 (509)
.+...+|.|.||+||||+--==+|
T Consensus 26 ~gef~vliGpSGsGKTTtLkMINr 49 (309)
T COG1125 26 EGEFLVLIGPSGSGKTTTLKMINR 49 (309)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHC
T ss_conf 972899987899757879999960
No 127
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA; InterPro: IPR011917 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes .; GO: 0005524 ATP binding, 0006869 lipid transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=83.28 E-value=0.56 Score=26.50 Aligned_cols=20 Identities=35% Similarity=0.556 Sum_probs=16.7
Q ss_pred CCCEEEEEEECCCCCCCCCCC
Q ss_conf 787027998335431112224
Q gi|254780826|r 216 EKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 216 ~~~d~alfFGLSGTGKTTLS~ 236 (509)
-| .+...-|-||+|||||-.
T Consensus 387 ~G-~~vALVGRSGSGKsTlv~ 406 (603)
T TIGR02203 387 PG-ETVALVGRSGSGKSTLVN 406 (603)
T ss_pred CC-CEEEEECCCCCHHHHHHH
T ss_conf 87-359987068853899985
No 128
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=83.21 E-value=0.52 Score=26.67 Aligned_cols=26 Identities=31% Similarity=0.517 Sum_probs=19.2
Q ss_pred CCCCCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 2453477787027998335431112224
Q gi|254780826|r 209 CSINMDKEKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 209 csan~~~~~~d~alfFGLSGTGKTTLS~ 236 (509)
.|..+. .| ++..+.|.||.|||||-.
T Consensus 19 vsl~i~-~G-ei~~iiG~nGaGKSTLl~ 44 (205)
T cd03226 19 LSLDLY-AG-EIIALTGKNGAGKTTLAK 44 (205)
T ss_pred EEEEEC-CC-CEEEEECCCCCCHHHHHH
T ss_conf 378886-99-899998899998999999
No 129
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=83.18 E-value=0.52 Score=26.68 Aligned_cols=71 Identities=20% Similarity=0.356 Sum_probs=38.3
Q ss_pred CCCCCCCEEEHHHCCCCCCCCHHHHHHHH---HHHHHHHC-----------------CEEEEEECCCC---CCCCCCCCC
Q ss_conf 01256531210010500156831538999---99998819-----------------80999816746---887688732
Q gi|254780826|r 374 GVLKPEATFSACFGAPFMPRDPVQYGNIL---KDYIVKYC-----------------VDCWLVNTGWT---AGSYGEGYR 430 (509)
Q Consensus 374 g~~ep~~tfs~cFg~PF~~~~p~~ya~ll---~~~i~~~~-----------------~~vyLvNTGw~---Gg~~g~G~R 430 (509)
=+.+|.-.+-- +|+--+.|..-.+++ .+.-++.+ -+|++++-|-+ |-+.-+= .
T Consensus 159 L~~~P~iLlLD---EPtsgLD~~~~~~i~~li~~l~~~~g~TiiivtHdl~~v~~iaDrv~vl~~G~Iv~~Gt~eel~-~ 234 (269)
T PRK11831 159 IALEPDLIMFD---EPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAWIVADKKIVAHGSAQALQ-A 234 (269)
T ss_pred HHCCCCEEEEC---CCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHH-H
T ss_conf 97599999982---8756799999999999999999852989999864989999869999999899899984999997-7
Q ss_pred CCHHHHHHHHHHHHCCCC
Q ss_conf 078899999999984960
Q gi|254780826|r 431 MPLSVTRALLKAIFDNSI 448 (509)
Q Consensus 431 i~l~~Tr~ii~ai~~g~l 448 (509)
=|=++||+.+.++.+|-+
T Consensus 235 ~P~~~~~~~~~~~~~~~~ 252 (269)
T PRK11831 235 NPDPRVRQFLDGIADGPV 252 (269)
T ss_pred CCHHHHHHHHHCCCCCCC
T ss_conf 975999999824899999
No 130
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=83.15 E-value=0.53 Score=26.63 Aligned_cols=21 Identities=48% Similarity=0.544 Sum_probs=17.3
Q ss_pred CCCCEEEEEEECCCCCCCCCCC
Q ss_conf 7787027998335431112224
Q gi|254780826|r 215 KEKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 215 ~~~~d~alfFGLSGTGKTTLS~ 236 (509)
++| ....+.|.||+|||||--
T Consensus 23 ~~G-Eiv~ilGpNGaGKSTllk 43 (177)
T cd03222 23 KEG-EVIGIVGPNGTGKTTAVK 43 (177)
T ss_pred CCC-CEEEEECCCCCCHHHHHH
T ss_conf 899-899998999999999999
No 131
>KOG0058 consensus
Probab=83.05 E-value=0.15 Score=30.22 Aligned_cols=64 Identities=28% Similarity=0.502 Sum_probs=35.7
Q ss_pred CEEEEEEECCCCCCCCCCC------CCC--CEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHC
Q ss_conf 7027998335431112224------788--61330311021567412345553211013583335135887530110312
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSA------SVD--RFLIGDDEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSASCRFGTVLE 289 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~------d~~--r~LigDDehgW~d~gvfn~EgGcYaK~i~Ls~~~EP~I~~aa~~~~ailE 289 (509)
+.+...-|+||.||||+.. ||. +.|+. .--+-+++--.|-+-|++=. -||..|+ ++|.|
T Consensus 494 Ge~vALVGPSGsGKSTiasLL~rfY~PtsG~IllD-------G~~i~~~~~~~lr~~Ig~V~-QEPvLFs-----~sI~e 560 (716)
T KOG0058 494 GEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLD-------GVPISDINHKYLRRKIGLVG-QEPVLFS-----GSIRE 560 (716)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEC-------CEEHHHCCHHHHHHHEEEEE-CCCEEEC-----CCHHH
T ss_conf 97799988999888999999997368888738778-------83456418799987714310-2655504-----51787
Q ss_pred CCEEC
Q ss_conf 40057
Q gi|254780826|r 290 NVVVD 294 (509)
Q Consensus 290 NV~~d 294 (509)
|+.+-
T Consensus 561 NI~YG 565 (716)
T KOG0058 561 NIAYG 565 (716)
T ss_pred HHHCC
T ss_conf 77527
No 132
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=82.99 E-value=0.47 Score=26.95 Aligned_cols=18 Identities=39% Similarity=0.575 Sum_probs=15.6
Q ss_pred EEEEEECCCCCCCCCCCC
Q ss_conf 279983354311122247
Q gi|254780826|r 220 VALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS~d 237 (509)
+.|+.||||.|||||-..
T Consensus 2 tvLl~Gl~~aGKT~Lf~~ 19 (203)
T cd04105 2 TVLLLGPSDSGKTALFTK 19 (203)
T ss_pred EEEEECCCCCCHHHHHHH
T ss_conf 599990799989999999
No 133
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=82.98 E-value=0.55 Score=26.55 Aligned_cols=19 Identities=37% Similarity=0.566 Sum_probs=16.3
Q ss_pred CCCEEEEEEECCCCCCCCCC
Q ss_conf 78702799833543111222
Q gi|254780826|r 216 EKEDVALFFGLSGTGKTTLS 235 (509)
Q Consensus 216 ~~~d~alfFGLSGTGKTTLS 235 (509)
.| ....+.|.||.|||||-
T Consensus 20 ~G-e~~~iiG~nGsGKSTLl 38 (176)
T cd03238 20 LN-VLVVVTGVSGSGKSTLV 38 (176)
T ss_pred CC-CEEEEECCCCCCHHHHH
T ss_conf 99-89999999999899999
No 134
>TIGR00635 ruvB Holliday junction DNA helicase RuvB; InterPro: IPR004605 All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.; GO: 0003677 DNA binding, 0005524 ATP binding, 0009378 Holliday junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=82.85 E-value=0.34 Score=27.89 Aligned_cols=27 Identities=41% Similarity=0.602 Sum_probs=20.3
Q ss_pred CCCCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 453477787027998335431112224
Q gi|254780826|r 210 SINMDKEKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 210 san~~~~~~d~alfFGLSGTGKTTLS~ 236 (509)
+|+.-++-=|-.||||.=|=|||||++
T Consensus 22 AAk~R~e~LDH~LL~GPPGLGKTTLA~ 48 (305)
T TIGR00635 22 AAKMRQEALDHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred HHHHCCCCCCCEEEECCCCCCHHHHHH
T ss_conf 998248973416631756874678999
No 135
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=82.81 E-value=0.62 Score=26.17 Aligned_cols=33 Identities=30% Similarity=0.457 Sum_probs=23.3
Q ss_pred CCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCC
Q ss_conf 7879931245347778702799833543111222
Q gi|254780826|r 202 RGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLS 235 (509)
Q Consensus 202 ~g~lpmHcsan~~~~~~d~alfFGLSGTGKTTLS 235 (509)
++.=+.|.-+++.=.+ .++++.|.||.|||||-
T Consensus 7 ~~~~~~~~~~~i~f~~-~itaivG~NGaGKSTLl 39 (204)
T cd03240 7 RNIRSFHERSEIEFFS-PLTLIVGQNGAGKTTII 39 (204)
T ss_pred ECCEECCCCCEEEEEC-CEEEEECCCCCCHHHHH
T ss_conf 4726027773588508-88999989999999999
No 136
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=82.75 E-value=0.11 Score=31.11 Aligned_cols=168 Identities=12% Similarity=0.210 Sum_probs=85.7
Q ss_pred EEEEEEECCCCCCCCCCCCCCCEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHCCCEECCCCC
Q ss_conf 02799833543111222478861330311021567412345553211013583335135887530110312400578981
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSASCRFGTVLENVVVDECGI 298 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d~~r~LigDDehgW~d~gvfn~EgGcYaK~i~Ls~~~EP~I~~aa~~~~ailENV~~d~~~~ 298 (509)
..-||-|..|+||++|...=-|.|+-..- .+ .-=|-|.. |.-.....+|+++. +.+..--....+|+=+.
T Consensus 26 HA~L~~g~~G~Gk~~la~~la~~LlC~~~-----~~--~~Cg~C~s-C~l~~~g~HPD~~~--i~pe~~~k~I~vd~IR~ 95 (319)
T PRK06090 26 GALLLQSDEGLGVESLVELFSHALLCQNY-----QS--EACGFCHS-CELMKSGNHPDLHV--IKPEKEGKSITVEQIRQ 95 (319)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCCC-----CC--CCCCCCHH-HHHHHCCCCCCCEE--EECCCCCCCCCHHHHHH
T ss_conf 06766799985799999999999808999-----99--98877877-99987589998236--61233567687999999
Q ss_pred -EECCCCCCCCCEEEEEECCCCC-------CCCCCCCCCCCCEE-EEEECCCCCCCCH-H---------HHCCHHHHHHH
Q ss_conf -1114788676705898600043-------10002567887269-9960267788760-4---------44185889999
Q gi|254780826|r 299 -PNFKDSSVTENTRAAYPLNFIH-------NHAPQSIGKHPKHV-IMLAADAFGVLPP-V---------AYLNPEKAVYY 359 (509)
Q Consensus 299 -~df~d~s~TeNtR~~yp~~~i~-------n~~~~~~~~~p~~i-ifl~~d~~gvlPp-v---------sklt~~qa~~~ 359 (509)
.+|.-.+-.+.++-++-++..+ |+--......|.+. |+|+++...-||| | ...+.+++..|
T Consensus 96 l~~~~~~~~~~g~~KV~iI~~ae~m~~~AaNALLKtLEEPp~~t~fiL~t~~~~~ll~TI~SRCq~~~l~~p~~~~~~~W 175 (319)
T PRK06090 96 CNRLAQESSQLGGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTDQAMQW 175 (319)
T ss_pred HHHHHHHCCCCCCCEEEEECCHHHCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHCCCCHHHCCCCCCCCCCCHHHHHHH
T ss_conf 99997545210693699981444349999999999842899883899876851208641876144502899599999999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCEEEHHHCCCCCCCCHH------HHHHHHHHHH
Q ss_conf 9742324566620001256531210010500156831------5389999999
Q gi|254780826|r 360 FLSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPV------QYGNILKDYI 406 (509)
Q Consensus 360 F~sGyT~k~agte~g~~ep~~tfs~cFg~PF~~~~p~------~ya~ll~~~i 406 (509)
. .+.|+.++......|.|+|+....-. .|.+++....
T Consensus 176 L----------~~q~~~~~~~aL~l~~g~Pl~a~~~l~~~~~~~~~~l~~~l~ 218 (319)
T PRK06090 176 L----------KGQGISVPAYALKLNMGSPLKTLAMMKEGELEEYHKLERQLV 218 (319)
T ss_pred H----------HHHCCCCHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9----------884875579999884999499999863868999999999999
No 137
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=82.75 E-value=0.52 Score=26.70 Aligned_cols=43 Identities=16% Similarity=0.151 Sum_probs=28.9
Q ss_pred CCCCCCCCCEEEHHHCCCCCCCCHHHHHHHH---HHHHHHHCCEEEEEEC
Q ss_conf 0001256531210010500156831538999---9999881980999816
Q gi|254780826|r 372 EKGVLKPEATFSACFGAPFMPRDPVQYGNIL---KDYIVKYCVDCWLVNT 418 (509)
Q Consensus 372 e~g~~ep~~tfs~cFg~PF~~~~p~~ya~ll---~~~i~~~~~~vyLvNT 418 (509)
-+-+.+|.-.+-- +|+=.+.|..-++++ .+.-++.++.+ |+.|
T Consensus 153 RAL~~~P~lllaD---EPTs~LD~~~~~~il~ll~~l~~e~g~t~-i~vT 198 (233)
T cd03258 153 RALANNPKVLLCD---EATSALDPETTQSILALLRDINRELGLTI-VLIT 198 (233)
T ss_pred HHHHCCCCEEEEC---CCCCCCCHHHHHHHHHHHHHHHHHHCCEE-EEEC
T ss_conf 9983399899965---97664698899999999999999729899-9989
No 138
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=82.66 E-value=0.58 Score=26.36 Aligned_cols=19 Identities=32% Similarity=0.560 Sum_probs=16.4
Q ss_pred CEEEEEEECCCCCCCCCCC
Q ss_conf 7027998335431112224
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~ 236 (509)
+...++.|.||.|||||-.
T Consensus 33 Gei~~llG~nGsGKSTLl~ 51 (202)
T cd03233 33 GEMVLVLGRPGSGCSTLLK 51 (202)
T ss_pred CEEEEEECCCCCCHHHHHH
T ss_conf 8499999899998899999
No 139
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=82.63 E-value=0.22 Score=29.17 Aligned_cols=69 Identities=16% Similarity=0.421 Sum_probs=35.0
Q ss_pred CCCCCCCCCEEEEEEECCCCCCCCCCC------CCC--CEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 453477787027998335431112224------788--613303110215674123455532110135833351358875
Q gi|254780826|r 210 SINMDKEKEDVALFFGLSGTGKTTLSA------SVD--RFLIGDDEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSAS 281 (509)
Q Consensus 210 san~~~~~~d~alfFGLSGTGKTTLS~------d~~--r~LigDDehgW~d~gvfn~EgGcYaK~i~Ls~~~EP~I~~aa 281 (509)
|..+ +.| ....+-|.||.|||||-. +|. +.+|+ ..-+-.+.-..+-+.|++=+ -||.+|+
T Consensus 361 s~~I-~~G-e~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~id-------G~di~~i~~~~lR~~i~~V~-Q~~~LF~-- 428 (593)
T PRK10790 361 NLSV-PSR-NFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLD-------GRPLSSLSHSVLRQGVAMVQ-QDPVVLA-- 428 (593)
T ss_pred CCCC-CCC-CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCC-------CEECCCCCHHHHHHCCCCCC-CCCCCCC--
T ss_conf 1044-899-7899879998868999999998556789941659-------93244246888863157516-6651456--
Q ss_pred HHCCHHHCCCEE
Q ss_conf 301103124005
Q gi|254780826|r 282 CRFGTVLENVVV 293 (509)
Q Consensus 282 ~~~~ailENV~~ 293 (509)
|+|.||+.+
T Consensus 429 ---gTI~eNi~~ 437 (593)
T PRK10790 429 ---DTFLANVTL 437 (593)
T ss_pred ---CCHHHHHHH
T ss_conf ---529999776
No 140
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=82.49 E-value=0.55 Score=26.52 Aligned_cols=56 Identities=18% Similarity=0.050 Sum_probs=31.9
Q ss_pred HHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHCCCCCCCCHHHHHHHHH---HHHHHHCCEEEEE
Q ss_conf 4418588999997423245666200012565312100105001568315389999---9998819809998
Q gi|254780826|r 349 AYLNPEKAVYYFLSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNILK---DYIVKYCVDCWLV 416 (509)
Q Consensus 349 sklt~~qa~~~F~sGyT~k~agte~g~~ep~~tfs~cFg~PF~~~~p~~ya~ll~---~~i~~~~~~vyLv 416 (509)
..||..|..---+ .-.=+.+|.-.+-- +|.--+.|....+++. +.-++++..+-+|
T Consensus 145 ~~LSGGq~QRv~i---------AraL~~~P~llllD---EPT~~LD~~~~~~i~~~l~~l~~~~g~tii~v 203 (228)
T PRK10584 145 AQLSGGEQQRVAL---------ARAFNGRPDVLFAD---EPTGNLDRQTGDKIADLLFSLNREHGTTLILV 203 (228)
T ss_pred CCCCHHHHHHHHH---------HHHHHCCCCEEEEC---CCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 8899799999999---------99987599999984---99767899999999999999999729899998
No 141
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein B; InterPro: IPR004435 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cisdithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism , . In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which coverts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner . MoCF is the active co-factor in eukaryotic and some prokaryotic molybdoenzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdoenzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF . Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 () of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) . The MobB domain is similar to that of the urease accessory protein UreG and the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocentres of their respective target enzymes. It is involved in the final step of molybdenum-cofactor biosynthesis. While its precise function has not been identified it is thought to be involved in the transfer of a guanine dinucleotide moiety to molybdopterin, as it shows GTP-binding and weak GTPase activity . The MobB protein (P32125 from SWISSPROT) from Escherichia coli, which is comprised of this domain, is a homodimer . Each molecule is composed of two distinct regions - an outer region comprised of 6 beta-strands and three alpha helices, and an inner region comprised of a two-strand beta hairpin followed by an alpha helix. These regions require interaction with the second monomer to allow proper folding to occur. The two monomers are intertwined and form an extensive 16-stranded beta-sheet. While the active site could not be positively identified, the presence of highly conserved residues suggests the substrate binding site occurs in the central solvent channel.; GO: 0005525 GTP binding, 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=82.36 E-value=0.49 Score=26.85 Aligned_cols=17 Identities=35% Similarity=0.466 Sum_probs=13.8
Q ss_pred EEEEECCCCCCCCCCCC
Q ss_conf 79983354311122247
Q gi|254780826|r 221 ALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 221 alfFGLSGTGKTTLS~d 237 (509)
..+-|.|+||||||=..
T Consensus 2 ~~i~G~k~SGKTtL~~~ 18 (165)
T TIGR00176 2 LQIVGYKNSGKTTLIER 18 (165)
T ss_pred EEEEEECCCCHHHHHHH
T ss_conf 37896258867899999
No 142
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=82.31 E-value=0.6 Score=26.28 Aligned_cols=65 Identities=29% Similarity=0.532 Sum_probs=35.0
Q ss_pred CCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHC
Q ss_conf 45347778702799833543111222478861330311021567412345553211013583335135887530110312
Q gi|254780826|r 210 SINMDKEKEDVALFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSASCRFGTVLE 289 (509)
Q Consensus 210 san~~~~~~d~alfFGLSGTGKTTLS~d~~r~LigDDehgW~d~gvfn~EgGcYaK~i~Ls~~~EP~I~~aa~~~~ailE 289 (509)
|..+- .| ....+.|.||.|||||-.- +.|.-. ...|...+.| .+.+-+. +|.+|+ ++|.|
T Consensus 25 sl~i~-~G-e~~~IvG~sGsGKSTLl~~----i~G~~~---~~~G~I~~~g-----~i~~v~Q-~~~l~~-----~Tv~e 84 (204)
T cd03250 25 NLEVP-KG-ELVAIVGPVGSGKSSLLSA----LLGELE---KLSGSVSVPG-----SIAYVSQ-EPWIQN-----GTIRE 84 (204)
T ss_pred EEEEC-CC-CEEEEECCCCCCHHHHHHH----HCCCCC---CCCCCCCCCC-----CEEEEEC-CCCCCC-----CCHHH
T ss_conf 89976-99-8999999999858999999----818952---5689522589-----8899958-775677-----50999
Q ss_pred CCEEC
Q ss_conf 40057
Q gi|254780826|r 290 NVVVD 294 (509)
Q Consensus 290 NV~~d 294 (509)
|+.+.
T Consensus 85 Ni~~~ 89 (204)
T cd03250 85 NILFG 89 (204)
T ss_pred HHHCC
T ss_conf 97446
No 143
>PRK04195 replication factor C large subunit; Provisional
Probab=82.18 E-value=0.64 Score=26.10 Aligned_cols=18 Identities=39% Similarity=0.739 Sum_probs=15.7
Q ss_pred EEEEEEECCCCCCCCCCC
Q ss_conf 027998335431112224
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~ 236 (509)
...||.|..|+||||+..
T Consensus 41 k~lLL~GPpGvGKTT~a~ 58 (403)
T PRK04195 41 KALLLYGPPGVGKTSLAH 58 (403)
T ss_pred CEEEEECCCCCCHHHHHH
T ss_conf 469988939987999999
No 144
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=82.18 E-value=0.44 Score=27.19 Aligned_cols=27 Identities=44% Similarity=0.568 Sum_probs=20.6
Q ss_pred EEEEEECCCCCCCCCCCCCCCEEEECC
Q ss_conf 279983354311122247886133031
Q gi|254780826|r 220 VALFFGLSGTGKTTLSASVDRFLIGDD 246 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS~d~~r~LigDD 246 (509)
..||.|.+||||||+..-=-+.|.|++
T Consensus 39 hlLf~GppG~GKTt~a~~la~~l~~~~ 65 (318)
T PRK00440 39 HLLFAGPPGTGKTTAALALARELYGEY 65 (318)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 698889599889999999999976986
No 145
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=82.06 E-value=1 Score=24.78 Aligned_cols=35 Identities=29% Similarity=0.373 Sum_probs=24.5
Q ss_pred CCEEEEECCCCCCC--------CCCEEEEEEECCCCCCCCCCC
Q ss_conf 78799312453477--------787027998335431112224
Q gi|254780826|r 202 RGIMPMHCSINMDK--------EKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 202 ~g~lpmHcsan~~~--------~~~d~alfFGLSGTGKTTLS~ 236 (509)
-|+-...+|+..+. -.+.+++|.|-||.|||||--
T Consensus 137 ~gy~v~~~S~~~~~g~~~L~~~l~~k~~v~~G~SGvGKSSLiN 179 (287)
T cd01854 137 LGYPVLAVSAKTGEGLDELREYLKGKTSVLVGQSGVGKSTLIN 179 (287)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCCHHHHHH
T ss_conf 9984999966898588999987479889998899888899998
No 146
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=82.04 E-value=0.58 Score=26.37 Aligned_cols=20 Identities=45% Similarity=0.596 Sum_probs=16.5
Q ss_pred CCCEEEEEEECCCCCCCCCCC
Q ss_conf 787027998335431112224
Q gi|254780826|r 216 EKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 216 ~~~d~alfFGLSGTGKTTLS~ 236 (509)
.| ....+.|.||.|||||-.
T Consensus 32 ~G-e~~~ilGpnGsGKSTLl~ 51 (226)
T cd03234 32 SG-QVMAILGSSGSGKTTLLD 51 (226)
T ss_pred CC-CEEEEECCCCCHHHHHHH
T ss_conf 88-099999899960999999
No 147
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=82.04 E-value=0.58 Score=26.40 Aligned_cols=18 Identities=44% Similarity=0.475 Sum_probs=14.7
Q ss_pred EEEEEECCCCCCCCCCCC
Q ss_conf 279983354311122247
Q gi|254780826|r 220 VALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS~d 237 (509)
+.-|-|-||+|||||-..
T Consensus 4 ii~ivG~s~SGKTTLi~k 21 (170)
T PRK10751 4 LLAIAAWSGTGKTTLLKK 21 (170)
T ss_pred EEEEEECCCCCHHHHHHH
T ss_conf 799994699999999999
No 148
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=81.92 E-value=0.6 Score=26.26 Aligned_cols=20 Identities=40% Similarity=0.587 Sum_probs=16.4
Q ss_pred CCCEEEEEEECCCCCCCCCCC
Q ss_conf 787027998335431112224
Q gi|254780826|r 216 EKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 216 ~~~d~alfFGLSGTGKTTLS~ 236 (509)
.| ....+.|.||.|||||--
T Consensus 27 ~G-E~~~llGpSGsGKSTLlr 46 (352)
T PRK10851 27 SG-QMVALLGPSGSGKTTLLR 46 (352)
T ss_pred CC-CEEEEECCCCCHHHHHHH
T ss_conf 99-899999999846999999
No 149
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=81.89 E-value=0.6 Score=26.28 Aligned_cols=19 Identities=37% Similarity=0.576 Sum_probs=15.2
Q ss_pred CEEEEEEECCCCCCCCCCC
Q ss_conf 7027998335431112224
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~ 236 (509)
+....+.|.||.|||||-.
T Consensus 30 Ge~~~llGpsG~GKTTllr 48 (358)
T PRK11650 30 GEFIVLVGPSGCGKSTLLR 48 (358)
T ss_pred CCEEEEECCCCCHHHHHHH
T ss_conf 9899999998636999999
No 150
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=81.87 E-value=0.59 Score=26.34 Aligned_cols=18 Identities=39% Similarity=0.569 Sum_probs=14.8
Q ss_pred CEEEEEEECCCCCCCCCC
Q ss_conf 702799833543111222
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLS 235 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS 235 (509)
+....+.|.||.|||||-
T Consensus 32 Ge~~~llGpSG~GKTTlL 49 (351)
T PRK11432 32 GTMVTLLGPSGCGKTTVL 49 (351)
T ss_pred CCEEEEECCCCCHHHHHH
T ss_conf 989999999964999999
No 151
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=81.83 E-value=0.63 Score=26.13 Aligned_cols=42 Identities=17% Similarity=0.273 Sum_probs=24.4
Q ss_pred CCCCCCCCCEEEHHHCCCCCCCCHHHHHHHH--HHHHHHHCCEEEEE
Q ss_conf 0001256531210010500156831538999--99998819809998
Q gi|254780826|r 372 EKGVLKPEATFSACFGAPFMPRDPVQYGNIL--KDYIVKYCVDCWLV 416 (509)
Q Consensus 372 e~g~~ep~~tfs~cFg~PF~~~~p~~ya~ll--~~~i~~~~~~vyLv 416 (509)
-.-+.+|.-.+ +-+|+--+.|..-.+++ -+.+++.+..+-+|
T Consensus 154 raL~~~P~iLl---lDEPTs~LD~~~~~~i~~ll~~l~~~g~tii~v 197 (242)
T PRK11124 154 RALMMEPQVLL---FDEPTAALDPEITAQIVSIIRELAETGITQVIV 197 (242)
T ss_pred HHHCCCCCEEE---ECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 64337997999---768865489999999999999998429989998
No 152
>TIGR02237 recomb_radB DNA repair and recombination protein RadB; InterPro: IPR011939 This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO) and DMC1 (IPR011940 from INTERPRO), and archaeal RadA (IPR011938 from INTERPRO) ,, .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=81.81 E-value=0.32 Score=28.07 Aligned_cols=104 Identities=22% Similarity=0.279 Sum_probs=56.8
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCCCEEEECCCEEECCCCCCCCCCCCCCCCCC-CCCCCCHHHHHH-HHHCCHHHCCCEE
Q ss_conf 78702799833543111222478861330311021567412345553211013-583335135887-5301103124005
Q gi|254780826|r 216 EKEDVALFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEGGCYAKSIN-LSKETEPEIFSA-SCRFGTVLENVVV 293 (509)
Q Consensus 216 ~~~d~alfFGLSGTGKTTLS~d~~r~LigDDehgW~d~gvfn~EgGcYaK~i~-Ls~~~EP~I~~a-a~~~~ailENV~~ 293 (509)
+.+-++=+||.-||||||+.---.- +..-.+.-=-|.-|.+ ||.|.=-+|..+ +.-|..+++|+.+
T Consensus 10 E~G~iTQiYGp~G~GKTn~c~~~a~------------~a~~~Gk~v~YiDTEGGLS~ER~~q~~~~~~~D~e~~~~~~iv 77 (223)
T TIGR02237 10 ERGIITQIYGPPGSGKTNICLILAV------------NAARQGKKVVYIDTEGGLSPERFKQIAEDRALDPERVLSNVIV 77 (223)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH------------HHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCCHHHHHCCEEE
T ss_conf 2035889875899867899999999------------9986189589996289832899999863058898888415355
Q ss_pred CCCCCEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCC
Q ss_conf 7898111147886767058986000431000256788726999602677887
Q gi|254780826|r 294 DECGIPNFKDSSVTENTRAAYPLNFIHNHAPQSIGKHPKHVIMLAADAFGVL 345 (509)
Q Consensus 294 d~~~~~df~d~s~TeNtR~~yp~~~i~n~~~~~~~~~p~~iifl~~d~~gvl 345 (509)
|.=-|++|=.++ +.-. .+-+..+-..+=+++-|++..+
T Consensus 78 -------~~~~~f~eQ~~a---i~~~----~~~~~~~G~~~~LvVvDs~t~~ 115 (223)
T TIGR02237 78 -------FEVFDFDEQEVA---IQKT----SKLIDRDGDKADLVVVDSFTAL 115 (223)
T ss_pred -------ECCCCHHHHHHH---HHHH----HHHHHCCCCEEEEEEEECCHHH
T ss_conf -------235356789999---9999----9998606883314888153345
No 153
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=81.76 E-value=0.64 Score=26.11 Aligned_cols=27 Identities=30% Similarity=0.517 Sum_probs=19.6
Q ss_pred CCCCCCCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 24534777870279983354311122247
Q gi|254780826|r 209 CSINMDKEKEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 209 csan~~~~~~d~alfFGLSGTGKTTLS~d 237 (509)
.|..+. .| +...+.|.||.|||||-.-
T Consensus 20 vsl~i~-~G-ei~~iiG~nGaGKSTLlk~ 46 (211)
T cd03225 20 ISLTIK-KG-EFVLIVGPNGSGKSTLLRL 46 (211)
T ss_pred EEEEEC-CC-CEEEEECCCCCCHHHHHHH
T ss_conf 178884-99-7999988999989999999
No 154
>CHL00095 clpC Clp protease ATP binding subunit
Probab=81.76 E-value=0.47 Score=26.95 Aligned_cols=75 Identities=16% Similarity=0.140 Sum_probs=41.4
Q ss_pred CCEEEHHHCC------CCCCCCHHHHH-------HHHHHHHHHHCCEE--------EEEECCCCCCCCCC---CCCCCHH
Q ss_conf 5312100105------00156831538-------99999998819809--------99816746887688---7320788
Q gi|254780826|r 379 EATFSACFGA------PFMPRDPVQYG-------NILKDYIVKYCVDC--------WLVNTGWTAGSYGE---GYRMPLS 434 (509)
Q Consensus 379 ~~tfs~cFg~------PF~~~~p~~ya-------~ll~~~i~~~~~~v--------yLvNTGw~Gg~~g~---G~Ri~l~ 434 (509)
...|.|=|-+ +|.|+....-. .-|.+++++.++++ ||+..|+.-. ||. -+-|.-.
T Consensus 701 ~~~F~PEFlnRiDeii~F~~L~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~a~~~l~~~gy~~~-~GARpl~R~I~~~ 779 (823)
T CHL00095 701 KQYFRPEFLNRLDEIIVFRPLTKDEVWEIAEIMLKELFKRLNNQGIQLEVDERFKTLLAKEGYNPL-YGARPLRRAIMRL 779 (823)
T ss_pred HHHCCHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHCCCCC-CCCHHHHHHHHHH
T ss_conf 843798787327827861899999999999999999999999689859988899999999587977-6813688999999
Q ss_pred HHHHHHHHHHCCCCCCCCEE
Q ss_conf 99999999984960246606
Q gi|254780826|r 435 VTRALLKAIFDNSIKSVPYR 454 (509)
Q Consensus 435 ~Tr~ii~ai~~g~l~~~~~~ 454 (509)
....+-+.|++|++..-...
T Consensus 780 i~~~ls~~il~g~~~~g~~v 799 (823)
T CHL00095 780 LEDPLAEEVLSFKIKPGDSL 799 (823)
T ss_pred HHHHHHHHHHCCCCCCCCEE
T ss_conf 88999999974888996989
No 155
>PRK09183 transposase/IS protein; Provisional
Probab=81.62 E-value=0.46 Score=27.05 Aligned_cols=21 Identities=33% Similarity=0.591 Sum_probs=17.3
Q ss_pred CCCEEEEEEECCCCCCCCCCCC
Q ss_conf 7870279983354311122247
Q gi|254780826|r 216 EKEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 216 ~~~d~alfFGLSGTGKTTLS~d 237 (509)
.+ .-.+|+|.+|||||-|+..
T Consensus 100 ~~-~Nvil~G~~GtGKThLA~A 120 (258)
T PRK09183 100 RN-ENIVLLGPSGVGKTHLAIA 120 (258)
T ss_pred CC-CCEEEECCCCCCHHHHHHH
T ss_conf 58-8679989999868999999
No 156
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=81.61 E-value=0.65 Score=26.06 Aligned_cols=41 Identities=17% Similarity=0.257 Sum_probs=24.8
Q ss_pred CCCCCCEEEHHHCCCCCCCCHHHHHHHHH---HHHHHHCCEEEEEEC
Q ss_conf 12565312100105001568315389999---999881980999816
Q gi|254780826|r 375 VLKPEATFSACFGAPFMPRDPVQYGNILK---DYIVKYCVDCWLVNT 418 (509)
Q Consensus 375 ~~ep~~tfs~cFg~PF~~~~p~~ya~ll~---~~i~~~~~~vyLvNT 418 (509)
+.+|.-.+ +-+|+--+.|..-.+++. +..++.++.+-+|--
T Consensus 145 ~~~P~vLl---lDEPts~LD~~~~~~i~~ll~~l~~~~~~til~vtH 188 (233)
T PRK10771 145 VREQPILL---LDEPFSALDPALRQEMLTLVSQVCQQRQLTLLMVSH 188 (233)
T ss_pred HCCCCEEE---EECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 55999999---928775579999999999999999836989999924
No 157
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=81.50 E-value=0.72 Score=25.76 Aligned_cols=53 Identities=19% Similarity=0.167 Sum_probs=28.5
Q ss_pred HHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHCCCCCCCCHHHHHHH---HHHHHHHHCCEE
Q ss_conf 44185889999974232456662000125653121001050015683153899---999998819809
Q gi|254780826|r 349 AYLNPEKAVYYFLSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNI---LKDYIVKYCVDC 413 (509)
Q Consensus 349 sklt~~qa~~~F~sGyT~k~agte~g~~ep~~tfs~cFg~PF~~~~p~~ya~l---l~~~i~~~~~~v 413 (509)
+.|+..|+.- +|=...-+.||....-- +||-.+.+.+-.++ |.+.....++.+
T Consensus 136 ~qLSGGQrQR---------VALARALA~eP~vLLLD---EPf~ALDa~vr~~lr~wLr~~~~~~~~tt 191 (345)
T COG1118 136 AQLSGGQRQR---------VALARALAVEPKVLLLD---EPFGALDAKVRKELRRWLRKLHDRLGVTT 191 (345)
T ss_pred HHCCHHHHHH---------HHHHHHHHCCCCEEEEC---CCCHHHHHHHHHHHHHHHHHHHHHHCCEE
T ss_conf 2127178899---------99998753499868635---87214519999999999999998609639
No 158
>pfam00154 RecA recA bacterial DNA recombination protein. RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyses an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by homologous recombination.
Probab=81.46 E-value=0.54 Score=26.57 Aligned_cols=20 Identities=30% Similarity=0.491 Sum_probs=17.6
Q ss_pred CEEEEEEECCCCCCCCCCCC
Q ss_conf 70279983354311122247
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d 237 (509)
+.+..++|+++||||||+.+
T Consensus 52 GRi~ei~G~essGKTtlal~ 71 (322)
T pfam00154 52 GRIIEIYGPESSGKTTLALH 71 (322)
T ss_pred CEEEEEECCCCCCHHHHHHH
T ss_conf 70899988987778999999
No 159
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=81.46 E-value=0.64 Score=26.10 Aligned_cols=21 Identities=38% Similarity=0.532 Sum_probs=17.0
Q ss_pred CCCCEEEEEEECCCCCCCCCCC
Q ss_conf 7787027998335431112224
Q gi|254780826|r 215 KEKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 215 ~~~~d~alfFGLSGTGKTTLS~ 236 (509)
..| .+..+.|.||.|||||--
T Consensus 23 ~~G-Eiv~liGpNGaGKSTLlk 43 (246)
T cd03237 23 SES-EVIGILGPNGIGKTTFIK 43 (246)
T ss_pred CCC-CEEEEECCCCCHHHHHHH
T ss_conf 579-899999799976999999
No 160
>PRK13853 type IV secretion system protein VirB4; Provisional
Probab=81.37 E-value=0.73 Score=25.70 Aligned_cols=16 Identities=50% Similarity=0.735 Sum_probs=13.9
Q ss_pred EEEEEECCCCCCCCCC
Q ss_conf 2799833543111222
Q gi|254780826|r 220 VALFFGLSGTGKTTLS 235 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS 235 (509)
-++.+|.+|+|||||-
T Consensus 428 Ht~I~G~TGsGKTtll 443 (789)
T PRK13853 428 MTAIFGPIGRGKTTLM 443 (789)
T ss_pred CEEEECCCCCCHHHHH
T ss_conf 4488789999889999
No 161
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=81.17 E-value=0.52 Score=26.72 Aligned_cols=16 Identities=44% Similarity=0.665 Sum_probs=13.9
Q ss_pred EEEEECCCCCCCCCCC
Q ss_conf 7998335431112224
Q gi|254780826|r 221 ALFFGLSGTGKTTLSA 236 (509)
Q Consensus 221 alfFGLSGTGKTTLS~ 236 (509)
.++.||+|+|||||-.
T Consensus 2 Il~lGl~~sGKTtil~ 17 (162)
T cd04157 2 ILVVGLDNSGKTTIIN 17 (162)
T ss_pred EEEECCCCCCHHHHHH
T ss_conf 9999999998899999
No 162
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=81.17 E-value=0.66 Score=26.00 Aligned_cols=56 Identities=13% Similarity=0.067 Sum_probs=34.0
Q ss_pred HHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHCCCCCCCCHHHHHHH---HHHHHHHHCCEEEEE
Q ss_conf 44185889999974232456662000125653121001050015683153899---999998819809998
Q gi|254780826|r 349 AYLNPEKAVYYFLSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNI---LKDYIVKYCVDCWLV 416 (509)
Q Consensus 349 sklt~~qa~~~F~sGyT~k~agte~g~~ep~~tfs~cFg~PF~~~~p~~ya~l---l~~~i~~~~~~vyLv 416 (509)
..||..|-.--.+ .-+=+.+|+-.+- -+||--+.|..-.++ |.+..++++..+-+|
T Consensus 127 ~~LSGGqkQRVai---------ArAL~~~P~iLll---DEPt~~LD~~~r~~l~~ll~~l~~~~g~Til~v 185 (255)
T PRK11248 127 WQLSGGQRQRVGI---------ARALAANPQLLLL---DEPFGALDAFTREQMQELLLKLWQETGKQVLLI 185 (255)
T ss_pred HHCCHHHHHHHHH---------HHHHHCCCCEEEE---ECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 3499999999999---------9999729999998---088777998999999999999999619999998
No 163
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=80.93 E-value=0.69 Score=25.89 Aligned_cols=21 Identities=33% Similarity=0.542 Sum_probs=17.1
Q ss_pred CCCCEEEEEEECCCCCCCCCCC
Q ss_conf 7787027998335431112224
Q gi|254780826|r 215 KEKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 215 ~~~~d~alfFGLSGTGKTTLS~ 236 (509)
+.| ....+.|.||.|||||-.
T Consensus 28 ~~G-e~~~iiG~sGsGKTTll~ 48 (218)
T cd03255 28 EKG-EFVAIVGPSGSGKSTLLN 48 (218)
T ss_pred CCC-CEEEEECCCCCHHHHHHH
T ss_conf 699-899999999986999999
No 164
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=80.87 E-value=0.68 Score=25.91 Aligned_cols=24 Identities=33% Similarity=0.570 Sum_probs=16.8
Q ss_pred CCCCCCCCCEEEEEEECCCCCCCCCC
Q ss_conf 45347778702799833543111222
Q gi|254780826|r 210 SINMDKEKEDVALFFGLSGTGKTTLS 235 (509)
Q Consensus 210 san~~~~~~d~alfFGLSGTGKTTLS 235 (509)
|-.+. .| .+..+.|.||.|||||-
T Consensus 39 sl~I~-~G-E~~~llGpsGsGKSTll 62 (377)
T PRK11607 39 SLTIY-KG-EIFALLGASGCGKSTLL 62 (377)
T ss_pred EEEEC-CC-CEEEEECCCCCHHHHHH
T ss_conf 87999-99-89999999984899999
No 165
>PRK00098 ribosome-associated GTPase; Reviewed
Probab=80.86 E-value=0.69 Score=25.88 Aligned_cols=34 Identities=29% Similarity=0.332 Sum_probs=24.3
Q ss_pred CEEEEECCCCCCC--------CCCEEEEEEECCCCCCCCCCC
Q ss_conf 8799312453477--------787027998335431112224
Q gi|254780826|r 203 GIMPMHCSINMDK--------EKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 203 g~lpmHcsan~~~--------~~~d~alfFGLSGTGKTTLS~ 236 (509)
|+-.+.+|+..+. -.+.+++|.|.||.|||||-.
T Consensus 141 gy~v~~~S~~~~~g~~~L~~~l~~k~sv~~G~SGVGKSSLiN 182 (298)
T PRK00098 141 GYDVLELSAKEGPGLDELKPLLAGKVTVLAGQSGVGKSTLLN 182 (298)
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCCHHHHHH
T ss_conf 997899968999899999998579869998789887888887
No 166
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=80.76 E-value=0.6 Score=26.27 Aligned_cols=16 Identities=50% Similarity=0.841 Sum_probs=9.3
Q ss_pred EEEEEECCCCCCCCCC
Q ss_conf 2799833543111222
Q gi|254780826|r 220 VALFFGLSGTGKTTLS 235 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS 235 (509)
.++|+|.-|||||||.
T Consensus 50 SmIl~GPPG~GKTTlA 65 (436)
T COG2256 50 SMILWGPPGTGKTTLA 65 (436)
T ss_pred EEEEECCCCCCHHHHH
T ss_conf 0577789998888999
No 167
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=80.69 E-value=0.72 Score=25.76 Aligned_cols=20 Identities=35% Similarity=0.572 Sum_probs=16.9
Q ss_pred CEEEEEEECCCCCCCCCCCC
Q ss_conf 70279983354311122247
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d 237 (509)
+++..+.|.+|.|||||-.-
T Consensus 23 Ge~v~iiGpNGaGKSTLlk~ 42 (245)
T PRK03695 23 GEILHLVGPNGAGKSTLLAR 42 (245)
T ss_pred CCEEEEECCCCCHHHHHHHH
T ss_conf 98999997899419999999
No 168
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=80.54 E-value=0.74 Score=25.67 Aligned_cols=56 Identities=18% Similarity=0.185 Sum_probs=31.3
Q ss_pred HCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHCCCCCCCCHHHHHHHHHH--HHHHHCCEEEEEEC
Q ss_conf 4185889999974232456662000125653121001050015683153899999--99881980999816
Q gi|254780826|r 350 YLNPEKAVYYFLSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNILKD--YIVKYCVDCWLVNT 418 (509)
Q Consensus 350 klt~~qa~~~F~sGyT~k~agte~g~~ep~~tfs~cFg~PF~~~~p~~ya~ll~~--~i~~~~~~vyLvNT 418 (509)
.||-.|..--.+. -.=+.+|.-.+- -+|+--+.|..-.+++.- ++++.+..+-+| |
T Consensus 152 ~LSGGq~QRv~IA---------raL~~~P~lLll---DEPts~LD~~~~~~i~~ll~~l~~~g~tii~v-t 209 (257)
T PRK10619 152 HLSGGQQQRVSIA---------RALAMEPEVLLF---DEPTSALDPELVGEVLRIMQQLAEEGKTMVVV-T 209 (257)
T ss_pred CCCHHHHHHHHHH---------HHHHCCCCEEEE---CCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE-C
T ss_conf 5899999999999---------998639989997---68866589899999999999999759999999-4
No 169
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=80.53 E-value=0.65 Score=26.03 Aligned_cols=20 Identities=35% Similarity=0.612 Sum_probs=16.8
Q ss_pred CCEEEEEEECCCCCCCCCCC
Q ss_conf 87027998335431112224
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~ 236 (509)
.++...+.|.||.|||||--
T Consensus 29 ~GE~~~iiGpNGaGKSTLlk 48 (262)
T PRK09984 29 HGEMVALLGPSGSGKSTLLR 48 (262)
T ss_pred CCCEEEEECCCCCHHHHHHH
T ss_conf 99899999899960999999
No 170
>PRK10908 cell division protein FtsE; Provisional
Probab=80.50 E-value=0.71 Score=25.81 Aligned_cols=19 Identities=42% Similarity=0.651 Sum_probs=16.4
Q ss_pred CEEEEEEECCCCCCCCCCC
Q ss_conf 7027998335431112224
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~ 236 (509)
++...+.|.||.|||||-.
T Consensus 28 Ge~~~liG~nGsGKSTLl~ 46 (222)
T PRK10908 28 GEMAFLTGHSGAGKSTLLK 46 (222)
T ss_pred CCEEEEECCCCCHHHHHHH
T ss_conf 9899999999807999999
No 171
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=80.47 E-value=0.71 Score=25.78 Aligned_cols=16 Identities=25% Similarity=0.592 Sum_probs=14.1
Q ss_pred EEEEEECCCCCCCCCC
Q ss_conf 2799833543111222
Q gi|254780826|r 220 VALFFGLSGTGKTTLS 235 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS 235 (509)
.+.+.|.||.|||||-
T Consensus 24 itaIvGpsGsGKSTLl 39 (197)
T cd03278 24 LTAIVGPNGSGKSNII 39 (197)
T ss_pred EEEEECCCCCCHHHHH
T ss_conf 2899999999889999
No 172
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=80.47 E-value=0.75 Score=25.65 Aligned_cols=56 Identities=16% Similarity=0.141 Sum_probs=30.5
Q ss_pred HHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHCCCCCCCCHHHHHHHHHH--HHHHHCCEEEEE
Q ss_conf 44185889999974232456662000125653121001050015683153899999--998819809998
Q gi|254780826|r 349 AYLNPEKAVYYFLSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNILKD--YIVKYCVDCWLV 416 (509)
Q Consensus 349 sklt~~qa~~~F~sGyT~k~agte~g~~ep~~tfs~cFg~PF~~~~p~~ya~ll~~--~i~~~~~~vyLv 416 (509)
..||-.|..--.+. -+-+.+|.-.+- -+|+--+.|..-.+++.- ++++.+..+-+|
T Consensus 135 ~~LSGGq~QRvaiA---------raL~~~P~lLll---DEPt~~LD~~~~~~i~~ll~~l~~~g~tvi~v 192 (240)
T PRK09493 135 SELSGGQQQRVAIA---------RALAVKPKLMLF---DEPTSALDPELRHEVLKVMQDLAEEGMTMVIV 192 (240)
T ss_pred CCCCHHHHHHHHHH---------HHHHCCCCEEEE---ECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 72899999999999---------877359999999---08876689999999999999999769989999
No 173
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=80.43 E-value=0.76 Score=25.61 Aligned_cols=26 Identities=27% Similarity=0.459 Sum_probs=19.0
Q ss_pred CCCCCCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 4534777870279983354311122247
Q gi|254780826|r 210 SINMDKEKEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 210 san~~~~~~d~alfFGLSGTGKTTLS~d 237 (509)
|..+- .| ....+.|-||+|||||..-
T Consensus 29 s~~i~-~G-e~vaiiG~sGsGKSTLl~l 54 (269)
T PRK13648 29 SFNIP-KG-QWTSIVGHNGSGKSTIAKL 54 (269)
T ss_pred EEEEC-CC-CEEEEECCCCCCHHHHHHH
T ss_conf 89985-99-8999999999979999999
No 174
>PRK11701 phnK phosphonates transport ATP-binding protein; Provisional
Probab=80.36 E-value=0.77 Score=25.57 Aligned_cols=40 Identities=20% Similarity=0.220 Sum_probs=23.9
Q ss_pred CCCCCCCEEEHHHCCCCCCCCHHHHHHHHH---HHHHHHCCEEEEE
Q ss_conf 012565312100105001568315389999---9998819809998
Q gi|254780826|r 374 GVLKPEATFSACFGAPFMPRDPVQYGNILK---DYIVKYCVDCWLV 416 (509)
Q Consensus 374 g~~ep~~tfs~cFg~PF~~~~p~~ya~ll~---~~i~~~~~~vyLv 416 (509)
-+.+|.-.+-- +|+--+.|..-.+++. +..++.+..+-+|
T Consensus 166 L~~~P~llllD---EPtsgLD~~~~~~i~~~l~~l~~~~g~til~v 208 (258)
T PRK11701 166 LVTHPRLVFMD---EPTGGLDVSVQARLLDLLRGLVVELGLAVVIV 208 (258)
T ss_pred HHCCCCEEEEC---CCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEE
T ss_conf 86499999985---98656899999999999999999609899999
No 175
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=80.24 E-value=0.78 Score=25.53 Aligned_cols=19 Identities=42% Similarity=0.567 Sum_probs=16.1
Q ss_pred CEEEEEEECCCCCCCCCCC
Q ss_conf 7027998335431112224
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~ 236 (509)
+....+.|.||.|||||-.
T Consensus 33 Ge~~~i~G~sGsGKSTLlk 51 (225)
T PRK10247 33 GEFKLITGPSGCGKSTLLK 51 (225)
T ss_pred CCEEEEECCCCCCHHHHHH
T ss_conf 9699999999999999999
No 176
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=80.24 E-value=0.9 Score=25.12 Aligned_cols=20 Identities=25% Similarity=0.589 Sum_probs=17.6
Q ss_pred CEEEEEEECCCCCCCCCCCC
Q ss_conf 70279983354311122247
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d 237 (509)
+.+++++|.+|+|||||...
T Consensus 23 G~itei~G~pG~GKTtl~lq 42 (224)
T PRK09361 23 GTITQIYGPPGSGKTNICIQ 42 (224)
T ss_pred CEEEEEECCCCCCHHHHHHH
T ss_conf 87999989999859999999
No 177
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=80.23 E-value=0.78 Score=25.53 Aligned_cols=20 Identities=30% Similarity=0.443 Sum_probs=16.5
Q ss_pred CCCEEEEEEECCCCCCCCCCC
Q ss_conf 787027998335431112224
Q gi|254780826|r 216 EKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 216 ~~~d~alfFGLSGTGKTTLS~ 236 (509)
.| ....+.|.+|.|||||--
T Consensus 26 ~G-e~~~l~G~NGaGKSTLl~ 45 (204)
T PRK13538 26 AG-ELVQIEGPNGAGKTSLLR 45 (204)
T ss_pred CC-CEEEEECCCCCCHHHHHH
T ss_conf 99-899999999985999999
No 178
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family; InterPro: IPR006001 This family of proteins includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases (IPR000577 from INTERPRO).; GO: 0016301 kinase activity, 0005975 carbohydrate metabolic process.
Probab=80.23 E-value=0.47 Score=26.98 Aligned_cols=16 Identities=31% Similarity=0.893 Sum_probs=13.6
Q ss_pred EEEECCCCCCCCCCCC
Q ss_conf 9983354311122247
Q gi|254780826|r 222 LFFGLSGTGKTTLSAS 237 (509)
Q Consensus 222 lfFGLSGTGKTTLS~d 237 (509)
+..|-||+||||.+..
T Consensus 2 VlmGvaG~GKs~~a~~ 17 (175)
T TIGR01313 2 VLMGVAGSGKSTIASA 17 (175)
T ss_pred EEECCCCCCHHHHHHH
T ss_conf 6760278628899999
No 179
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=80.21 E-value=0.73 Score=25.73 Aligned_cols=56 Identities=18% Similarity=0.202 Sum_probs=30.6
Q ss_pred HHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHCCCCCCCCHHHHHHHHH---HHHHHHCCEEEEE
Q ss_conf 4418588999997423245666200012565312100105001568315389999---9998819809998
Q gi|254780826|r 349 AYLNPEKAVYYFLSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNILK---DYIVKYCVDCWLV 416 (509)
Q Consensus 349 sklt~~qa~~~F~sGyT~k~agte~g~~ep~~tfs~cFg~PF~~~~p~~ya~ll~---~~i~~~~~~vyLv 416 (509)
..||-.|-.---+. -.-+.+|.-.+ +-+|+--+.|..-.+++. +.-++.+..+-+|
T Consensus 143 ~~LSGGqkQRvaiA---------~aL~~~P~iLl---lDEPTs~LDp~~~~~i~~~l~~L~~e~g~Tvi~v 201 (287)
T PRK13637 143 FELSGGQKRRVAIA---------GVVAMEPKVLI---LDEPTAGLDPKGRDDILEKIKALHKEYNMTIILV 201 (287)
T ss_pred HHCCHHHHHHHHHH---------HHHHCCCCEEE---EECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 12998899999999---------99983999999---8388664899999999999999998509899999
No 180
>PRK06526 transposase; Provisional
Probab=80.19 E-value=0.55 Score=26.52 Aligned_cols=22 Identities=45% Similarity=0.712 Sum_probs=17.7
Q ss_pred CCCEEEEEEECCCCCCCCCCCCC
Q ss_conf 78702799833543111222478
Q gi|254780826|r 216 EKEDVALFFGLSGTGKTTLSASV 238 (509)
Q Consensus 216 ~~~d~alfFGLSGTGKTTLS~d~ 238 (509)
.++ -.+|.|.+|||||-|+..-
T Consensus 97 ~~~-Nvil~G~~GtGKThLA~Al 118 (254)
T PRK06526 97 GKE-NVVFLGPPGTGKTHLAIGL 118 (254)
T ss_pred CCC-CEEEECCCCCCHHHHHHHH
T ss_conf 588-7899899998689999999
No 181
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=80.14 E-value=0.82 Score=25.38 Aligned_cols=25 Identities=32% Similarity=0.513 Sum_probs=18.8
Q ss_pred CCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 3477787027998335431112224
Q gi|254780826|r 212 NMDKEKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 212 n~~~~~~d~alfFGLSGTGKTTLS~ 236 (509)
+.+-..++..+..|.||.|||||--
T Consensus 25 sL~ia~ge~vv~lGpSGcGKTTLLn 49 (259)
T COG4525 25 SLTIASGELVVVLGPSGCGKTTLLN 49 (259)
T ss_pred CEEECCCCEEEEECCCCCCHHHHHH
T ss_conf 5023589789997688865788999
No 182
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=80.09 E-value=0.72 Score=25.76 Aligned_cols=40 Identities=33% Similarity=0.507 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHC-CCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCC
Q ss_conf 87789999998624-107879931245347778702799833543111222
Q gi|254780826|r 186 EIKKSVFTYLNHIF-PERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLS 235 (509)
Q Consensus 186 EiKKsiFtvmny~l-p~~g~lpmHcsan~~~~~~d~alfFGLSGTGKTTLS 235 (509)
|.|+----+|-|+- |++ -|+=--...||||.+|||||-+.
T Consensus 128 eAK~kcrli~~yLenPe~----------Fg~WAPknVLFyGppGTGKTm~A 168 (368)
T COG1223 128 EAKRKCRLIMEYLENPER----------FGDWAPKNVLFYGPPGTGKTMMA 168 (368)
T ss_pred HHHHHHHHHHHHHHCHHH----------HCCCCCCEEEEECCCCCCHHHHH
T ss_conf 888887999999649687----------63457541687789996487999
No 183
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=79.98 E-value=0.78 Score=25.52 Aligned_cols=19 Identities=42% Similarity=0.511 Sum_probs=16.3
Q ss_pred CEEEEEEECCCCCCCCCCC
Q ss_conf 7027998335431112224
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~ 236 (509)
+++..+.|.+|.|||||--
T Consensus 37 Ge~~~l~GpNGaGKTTLlr 55 (214)
T PRK13543 37 GEALLVQGDNGAGKTTLLR 55 (214)
T ss_pred CCEEEEECCCCCCHHHHHH
T ss_conf 9899999999987999999
No 184
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=79.95 E-value=0.8 Score=25.44 Aligned_cols=20 Identities=30% Similarity=0.419 Sum_probs=16.7
Q ss_pred CEEEEEEECCCCCCCCCCCC
Q ss_conf 70279983354311122247
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d 237 (509)
+....+.|.||+|||||..-
T Consensus 34 Ge~v~ivG~sGsGKSTLl~l 53 (207)
T cd03369 34 GEKIGIVGRTGAGKSTLILA 53 (207)
T ss_pred CCEEEEECCCCCCHHHHHHH
T ss_conf 99999999999879999999
No 185
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=79.95 E-value=0.8 Score=25.45 Aligned_cols=19 Identities=37% Similarity=0.469 Sum_probs=16.0
Q ss_pred CEEEEEEECCCCCCCCCCC
Q ss_conf 7027998335431112224
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~ 236 (509)
+...+++|.||+||+||-.
T Consensus 4 G~l~vlsgPSG~GKsTl~k 22 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVK 22 (191)
T ss_pred CEEEEEECCCCCCHHHHHH
T ss_conf 6399998998888899999
No 186
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=79.92 E-value=1 Score=24.74 Aligned_cols=17 Identities=53% Similarity=0.835 Sum_probs=13.8
Q ss_pred EEEEEECCCCCCCCCCC
Q ss_conf 27998335431112224
Q gi|254780826|r 220 VALFFGLSGTGKTTLSA 236 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS~ 236 (509)
-++.+|.+|+|||||-+
T Consensus 458 HtlIiGpTGsGKTvll~ 474 (818)
T PRK13830 458 HTLIFGPTGSGKSTLLA 474 (818)
T ss_pred EEEEECCCCCCHHHHHH
T ss_conf 05898999998899999
No 187
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=79.86 E-value=0.82 Score=25.39 Aligned_cols=18 Identities=33% Similarity=0.750 Sum_probs=15.7
Q ss_pred CEEEEEEECCCCCCCCCC
Q ss_conf 702799833543111222
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLS 235 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS 235 (509)
+....+.|.||.|||||.
T Consensus 21 Ge~~aIvG~nGsGKSTL~ 38 (226)
T cd03270 21 NKLVVITGVSGSGKSSLA 38 (226)
T ss_pred CCEEEEECCCCCHHHHHH
T ss_conf 989999878996098983
No 188
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=79.85 E-value=0.79 Score=25.50 Aligned_cols=99 Identities=20% Similarity=0.217 Sum_probs=51.4
Q ss_pred CCCCCCCCHHHHCCHHHHHHHHHHH-CCCCCCCCCCCCCCCCCEEEHHHCCCCCCCCHHHHHHHHH---HHHHHH-----
Q ss_conf 2677887604441858899999742-3245666200012565312100105001568315389999---999881-----
Q gi|254780826|r 339 ADAFGVLPPVAYLNPEKAVYYFLSG-YTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNILK---DYIVKY----- 409 (509)
Q Consensus 339 ~d~~gvlPpvsklt~~qa~~~F~sG-yT~k~agte~g~~ep~~tfs~cFg~PF~~~~p~~ya~ll~---~~i~~~----- 409 (509)
.+..|+-|-+.+--|.| +|| .--++|=.-+-+.+|.-..- -+|.=.+.+++-|+.|- +.-+++
T Consensus 125 L~~VgL~~~~l~R~P~e-----LSGGQ~QRiaIARAL~~~PklLIl---DEptSaLD~siQa~IlnlL~~l~~~~~lt~l 196 (252)
T COG1124 125 LDQVGLPPSFLDRRPHE-----LSGGQRQRIAIARALIPEPKLLIL---DEPTSALDVSVQAQILNLLLELKKERGLTYL 196 (252)
T ss_pred HHHCCCCHHHHHCCCHH-----CCHHHHHHHHHHHHHCCCCCEEEE---CCCHHHHCHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 99849998998539421-----281689999999986368887995---3823441588999999999999986194599
Q ss_pred ------------CCEEEEEECCCCCCCCCCCC---CCCHHHHHHHHHHHHC
Q ss_conf ------------98099981674688768873---2078899999999984
Q gi|254780826|r 410 ------------CVDCWLVNTGWTAGSYGEGY---RMPLSVTRALLKAIFD 445 (509)
Q Consensus 410 ------------~~~vyLvNTGw~Gg~~g~G~---Ri~l~~Tr~ii~ai~~ 445 (509)
--+|+++.-|-+=.-+-.+. .-.-++||.+++|+..
T Consensus 197 ~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~~~h~ytr~Ll~a~~~ 247 (252)
T COG1124 197 FISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSHPSHPYTRELLEAVPS 247 (252)
T ss_pred EEECCHHHHHHHHHHEEEEECCEEEEEECHHHHHCCCCCHHHHHHHHHHHC
T ss_conf 996729999988535254007827886026665437755789999974101
No 189
>PRK10419 nikE nickel transporter ATP-binding protein; Provisional
Probab=79.85 E-value=0.78 Score=25.51 Aligned_cols=41 Identities=10% Similarity=0.196 Sum_probs=26.6
Q ss_pred CCCCCCCCEEEHHHCCCCCCCCHHHHHHHHHH---HHHHHCCEEEEE
Q ss_conf 00125653121001050015683153899999---998819809998
Q gi|254780826|r 373 KGVLKPEATFSACFGAPFMPRDPVQYGNILKD---YIVKYCVDCWLV 416 (509)
Q Consensus 373 ~g~~ep~~tfs~cFg~PF~~~~p~~ya~ll~~---~i~~~~~~vyLv 416 (509)
+-+.+|.-.+.- +|.-.+.+...++++.- .-+++++.+-+|
T Consensus 165 AL~~~P~lLi~D---EPtsaLD~~~q~~il~ll~~l~~~~g~t~i~I 208 (266)
T PRK10419 165 ALAVEPKLLILD---EAVSNLDLVLQAGVIRLLKKLQQQFGTACLFI 208 (266)
T ss_pred HHCCCCCEEEEE---CCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEE
T ss_conf 640698789996---88653699999999999999999759899998
No 190
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=79.84 E-value=0.82 Score=25.39 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=18.6
Q ss_pred CCCCCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 2453477787027998335431112224
Q gi|254780826|r 209 CSINMDKEKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 209 csan~~~~~~d~alfFGLSGTGKTTLS~ 236 (509)
.|..+. .| ....+.|.||+|||||-.
T Consensus 23 isf~I~-~G-e~vaIvG~sGsGKSTLl~ 48 (275)
T cd03289 23 ISFSIS-PG-QRVGLLGRTGSGKSTLLS 48 (275)
T ss_pred EEEEEC-CC-CEEEEECCCCCCHHHHHH
T ss_conf 079987-99-999999999997999999
No 191
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=79.77 E-value=0.78 Score=25.51 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=17.9
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCC
Q ss_conf 787027998335431112224788
Q gi|254780826|r 216 EKEDVALFFGLSGTGKTTLSASVD 239 (509)
Q Consensus 216 ~~~d~alfFGLSGTGKTTLS~d~~ 239 (509)
.| ....+.|.||.|||||.--=.
T Consensus 35 ~G-e~vaivG~nGsGKSTLlk~l~ 57 (273)
T PRK13632 35 EG-EYVAILGHNGSGKSTISKILT 57 (273)
T ss_pred CC-CEEEEECCCCCHHHHHHHHHH
T ss_conf 99-899999999986999999997
No 192
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=79.77 E-value=0.82 Score=25.36 Aligned_cols=19 Identities=37% Similarity=0.559 Sum_probs=16.3
Q ss_pred CEEEEEEECCCCCCCCCCC
Q ss_conf 7027998335431112224
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~ 236 (509)
+....+.|.+|+|||||-.
T Consensus 28 Gei~~l~G~NGaGKTTLlk 46 (206)
T PRK13539 28 GEALVLTGPNGSGKTTLLR 46 (206)
T ss_pred CCEEEEECCCCCCHHHHHH
T ss_conf 9499998999998999999
No 193
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=79.74 E-value=0.79 Score=25.50 Aligned_cols=17 Identities=47% Similarity=0.786 Sum_probs=11.5
Q ss_pred EEEEEEECCCCCCCCCC
Q ss_conf 02799833543111222
Q gi|254780826|r 219 DVALFFGLSGTGKTTLS 235 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS 235 (509)
....+.|.||.|||||-
T Consensus 30 e~~~llGpsG~GKSTll 46 (369)
T PRK11000 30 EFVVFVGPSGCGKSTLL 46 (369)
T ss_pred CEEEEECCCCCHHHHHH
T ss_conf 89999999973699999
No 194
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=79.69 E-value=0.84 Score=25.32 Aligned_cols=19 Identities=32% Similarity=0.648 Sum_probs=16.2
Q ss_pred CEEEEEEECCCCCCCCCCC
Q ss_conf 7027998335431112224
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~ 236 (509)
+....+-|.||.|||||..
T Consensus 349 Ge~vaiVG~SGsGKSTL~~ 367 (547)
T PRK10522 349 GELLFLIGGNGSGKSTLAM 367 (547)
T ss_pred CCEEEEECCCCCCHHHHHH
T ss_conf 9889998999997799999
No 195
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=79.67 E-value=0.82 Score=25.37 Aligned_cols=19 Identities=37% Similarity=0.550 Sum_probs=16.2
Q ss_pred CEEEEEEECCCCCCCCCCC
Q ss_conf 7027998335431112224
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~ 236 (509)
+.+..+.|.||.|||||-.
T Consensus 37 Ge~~~liG~NGaGKSTLl~ 55 (265)
T PRK10575 37 GKVTGLIGHNGSGKSTLLK 55 (265)
T ss_pred CCEEEEECCCCCHHHHHHH
T ss_conf 9899999999980999999
No 196
>PRK07952 DNA replication protein DnaC; Validated
Probab=79.65 E-value=0.53 Score=26.61 Aligned_cols=25 Identities=36% Similarity=0.522 Sum_probs=20.1
Q ss_pred EEEEEEECCCCCCCCCCCCCCCEEE
Q ss_conf 0279983354311122247886133
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSASVDRFLI 243 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d~~r~Li 243 (509)
..-+|+|-.|||||.|++-=.+.||
T Consensus 97 ~gLlF~G~~GTGKThLA~aIan~Li 121 (242)
T PRK07952 97 ASFIFSGKPGTGKNHLAAAICNELL 121 (242)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 7179978999978999999999999
No 197
>PRK08181 transposase; Validated
Probab=79.45 E-value=0.61 Score=26.23 Aligned_cols=19 Identities=42% Similarity=0.686 Sum_probs=16.5
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
.-.+|+|.+|||||-|+..
T Consensus 107 ~Nvil~Gp~GtGKThLA~A 125 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAA 125 (269)
T ss_pred CEEEEECCCCCCHHHHHHH
T ss_conf 7089989999878899999
No 198
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=79.43 E-value=0.96 Score=24.94 Aligned_cols=23 Identities=39% Similarity=0.634 Sum_probs=19.1
Q ss_pred CEEEEEEECCCCCCCCCCCCCCC
Q ss_conf 70279983354311122247886
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSASVDR 240 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d~~r 240 (509)
..++.|-|.||.||+||----+|
T Consensus 33 ~~VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 33 NKVTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
T ss_conf 80699888988678889999875
No 199
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=79.41 E-value=1.3 Score=24.01 Aligned_cols=66 Identities=24% Similarity=0.342 Sum_probs=40.2
Q ss_pred EEEEEHHCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCC
Q ss_conf 69977221935664136788877899999986241078799312453477787027998335431112224788
Q gi|254780826|r 166 IIAVDLTAGLILIGGTSYAGEIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSASVD 239 (509)
Q Consensus 166 ~i~in~~~k~~lI~GT~YaGEiKKsiFtvmny~lp~~g~lpmHcsan~~~~~~d~alfFGLSGTGKTTLS~d~~ 239 (509)
+......-...-|+| ..+.|..+-....+.+.....+ ...++... -..||+|..|||||.|.....
T Consensus 232 ~~~~~~~v~~~digg---l~~~k~~l~e~v~~~~~~~e~~---~~~~~~~~--~giLl~GpPGtGKT~lAkava 297 (494)
T COG0464 232 VLFEDEDVTLDDIGG---LEEAKEELKEAIETPLKRPELF---RKLGLRPP--KGVLLYGPPGTGKTLLAKAVA 297 (494)
T ss_pred CEECCCCCEEEEECC---HHHHHHHHHHHHHHHHHHHHHH---HHCCCCCC--CEEEEECCCCCCHHHHHHHHH
T ss_conf 300368851453236---3779999999999999708876---32589888--369998899975899999987
No 200
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=79.24 E-value=0.85 Score=25.27 Aligned_cols=40 Identities=25% Similarity=0.430 Sum_probs=25.5
Q ss_pred CCCCCCCEEEHHHCCCCCCCCHHHHHHHH---HHHHHHHCCEEEEE
Q ss_conf 01256531210010500156831538999---99998819809998
Q gi|254780826|r 374 GVLKPEATFSACFGAPFMPRDPVQYGNIL---KDYIVKYCVDCWLV 416 (509)
Q Consensus 374 g~~ep~~tfs~cFg~PF~~~~p~~ya~ll---~~~i~~~~~~vyLv 416 (509)
-+.+|+..+ +-+|+--+.|..-.+++ .+.-++.+..+-+|
T Consensus 160 La~~P~iLi---lDEPTs~LDp~~~~~i~~~l~~l~~e~g~Tii~v 202 (281)
T PRK13633 160 LAMRPECII---FDEPTAMLDPSGRREVVNTIKELNKKYGITIILI 202 (281)
T ss_pred HHCCCCEEE---EECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 985999999---8187343898999999999999998409899998
No 201
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=79.19 E-value=0.89 Score=25.15 Aligned_cols=19 Identities=32% Similarity=0.452 Sum_probs=16.1
Q ss_pred CCCEEEEEEECCCCCCCCCC
Q ss_conf 78702799833543111222
Q gi|254780826|r 216 EKEDVALFFGLSGTGKTTLS 235 (509)
Q Consensus 216 ~~~d~alfFGLSGTGKTTLS 235 (509)
.| ....+-|.||.|||||-
T Consensus 20 ~G-~~~aIiG~sGsGKSTLl 38 (261)
T cd03271 20 LG-VLTCVTGVSGSGKSSLI 38 (261)
T ss_pred CC-CEEEEECCCCCCHHHHH
T ss_conf 99-99999879998699999
No 202
>PRK06762 hypothetical protein; Provisional
Probab=79.18 E-value=0.66 Score=25.99 Aligned_cols=28 Identities=32% Similarity=0.583 Sum_probs=19.3
Q ss_pred EEEEEECCCCCCCCCCCCC------CCEEEECCC
Q ss_conf 2799833543111222478------861330311
Q gi|254780826|r 220 VALFFGLSGTGKTTLSASV------DRFLIGDDE 247 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS~d~------~r~LigDDe 247 (509)
-.++=|-||+||||+...= +-.||.+|.
T Consensus 4 LIiiRGNSgSGKtT~Ak~L~~~~G~g~lLvsQD~ 37 (166)
T PRK06762 4 LIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDV 37 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCEEEEHHH
T ss_conf 8999788888878999999998688857853758
No 203
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=79.15 E-value=0.88 Score=25.18 Aligned_cols=19 Identities=32% Similarity=0.499 Sum_probs=16.3
Q ss_pred CEEEEEEECCCCCCCCCCC
Q ss_conf 7027998335431112224
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~ 236 (509)
+....+.|.+|.|||||--
T Consensus 25 Ge~~~liGpNGaGKSTllk 43 (213)
T cd03235 25 GEFLAIVGPNGAGKSTLLK 43 (213)
T ss_pred CCEEEEECCCCCCHHHHHH
T ss_conf 9899999999986999999
No 204
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=79.13 E-value=0.86 Score=25.24 Aligned_cols=59 Identities=29% Similarity=0.370 Sum_probs=30.9
Q ss_pred CEEEEEEECCCCCCCCCCCCCCCEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHCCCEEC
Q ss_conf 70279983354311122247886133031102156741234555321101358333513588753011031240057
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSASCRFGTVLENVVVD 294 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d~~r~LigDDehgW~d~gvfn~EgGcYaK~i~Ls~~~EP~I~~aa~~~~ailENV~~d 294 (509)
+....+.|.||.|||||..-=-|.+--+ .|-..+-| .+++.+ -+|.+| .+++-||+.+.
T Consensus 63 Ge~vaIVG~sGSGKSTLl~lL~gl~~p~-------~G~I~~~g-----~i~~v~-Q~~~lf-----~~TireNI~~g 121 (282)
T cd03291 63 GEMLAITGSTGSGKTSLLMLILGELEPS-------EGKIKHSG-----RISFSS-QFSWIM-----PGTIKENIIFG 121 (282)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCC-------CCEEEECC-----EEEEEC-CCCCCC-----CCCHHHHHHCC
T ss_conf 9999999999981999999995787278-------65899999-----999865-744226-----71099997516
No 205
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=79.09 E-value=0.63 Score=26.13 Aligned_cols=25 Identities=40% Similarity=0.647 Sum_probs=18.8
Q ss_pred EEEEECCCCCCCCCCCCCCCEEEEC
Q ss_conf 7998335431112224788613303
Q gi|254780826|r 221 ALFFGLSGTGKTTLSASVDRFLIGD 245 (509)
Q Consensus 221 alfFGLSGTGKTTLS~d~~r~LigD 245 (509)
.||.|..|+||||+..-=-|.|-|+
T Consensus 39 lLf~GPpG~GKTt~A~~lA~~l~~~ 63 (337)
T PRK12402 39 LVVYGPSGSGKTAAVRALARELYGD 63 (337)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 9888929848999999999996799
No 206
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=79.08 E-value=0.89 Score=25.13 Aligned_cols=20 Identities=35% Similarity=0.632 Sum_probs=16.7
Q ss_pred CCEEEEEEECCCCCCCCCCC
Q ss_conf 87027998335431112224
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~ 236 (509)
.+.+..+.|.+|.|||||-.
T Consensus 25 ~Gei~~liG~nGaGKSTLl~ 44 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLK 44 (222)
T ss_pred CCCEEEEECCCCCCHHHHHH
T ss_conf 99899999999985999999
No 207
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=79.08 E-value=0.85 Score=25.29 Aligned_cols=19 Identities=37% Similarity=0.476 Sum_probs=16.1
Q ss_pred CEEEEEEECCCCCCCCCCC
Q ss_conf 7027998335431112224
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~ 236 (509)
++...+.|.||.|||||--
T Consensus 38 GEiv~LiG~nGaGKSTLlr 56 (257)
T PRK11247 38 GQFVAVVGRSGCGKSTLLR 56 (257)
T ss_pred CCEEEEECCCCCHHHHHHH
T ss_conf 9899999899888999999
No 208
>PRK10744 phosphate transporter subunit; Provisional
Probab=79.07 E-value=0.89 Score=25.14 Aligned_cols=19 Identities=53% Similarity=0.774 Sum_probs=16.1
Q ss_pred CCEEEEEEECCCCCCCCCC
Q ss_conf 8702799833543111222
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLS 235 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS 235 (509)
.+++..+.|.||.|||||-
T Consensus 35 ~Ge~~~liG~nGaGKSTLl 53 (257)
T PRK10744 35 KNQVTAFIGPSGCGKSTLL 53 (257)
T ss_pred CCCEEEEECCCCCCHHHHH
T ss_conf 9989999999998199999
No 209
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=79.07 E-value=1.8 Score=23.18 Aligned_cols=116 Identities=10% Similarity=0.091 Sum_probs=58.0
Q ss_pred CHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHCCCCCCCCHHHHHHHHHH--HHHHHCCEEEEEECCCCCC
Q ss_conf 60444185889999974232456662000125653121001050015683153899999--9988198099981674688
Q gi|254780826|r 346 PPVAYLNPEKAVYYFLSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNILKD--YIVKYCVDCWLVNTGWTAG 423 (509)
Q Consensus 346 Ppvsklt~~qa~~~F~sGyT~k~agte~g~~ep~~tfs~cFg~PF~~~~p~~ya~ll~~--~i~~~~~~vyLvNTGw~Gg 423 (509)
-|+.+||..|-+---+.-- -+.+|.-.+- -+|+--+.|....+++.. .+++.+..+-++ |
T Consensus 139 ~~~~~LSgGqkqrl~lA~a---------l~~~P~iLiL---DEPts~LD~~~~~~i~~~i~~l~~~g~Tiilv-S----- 200 (264)
T PRK13546 139 QPVKKYSSGMRAKLGFSIN---------ITVNPDILVI---DEALSVGDQTFAQKCLDKIYEFKEQNKTIFFV-S----- 200 (264)
T ss_pred CCCCCCCHHHHHHHHHHHH---------HHCCCCEEEE---ECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE-C-----
T ss_conf 7553479999999999999---------9569999999---59875489999999999999999689899998-4-----
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 76887320788999999999849602466066788774256207989965649766259989999999999999999998
Q gi|254780826|r 424 SYGEGYRMPLSVTRALLKAIFDNSIKSVPYRVDENFGFSVPLEVKGVDRKLLNPRDSWNDVEAYDQKMRELLLMFENNAE 503 (509)
Q Consensus 424 ~~g~G~Ri~l~~Tr~ii~ai~~g~l~~~~~~~~~~f~l~iP~~~~gv~~~~l~P~~~w~d~~~Y~~~a~~L~~~F~~Nf~ 503 (509)
+. ++ .+..+. +.+-+-.+... -..|-|.+++ +.|++...+..+.+..+=+
T Consensus 201 -----H~--l~----~v~~lc----Dri~vl~~GkI------i~~G~~~evl---------~ky~~~~~~~~~~~~~e~~ 250 (264)
T PRK13546 201 -----HN--LG----QVRQFC----TKIAWIEGGKL------KDYGELDDVL---------PKYEAFLNDFKKKSKAEQK 250 (264)
T ss_pred -----CC--HH----HHHHHC----CEEEEEECCEE------EEECCHHHHH---------HHHHHHHHHHHHCCHHHHH
T ss_conf -----87--89----999869----99999989889------9985999999---------9999999999861877899
Q ss_pred HHHCCC
Q ss_conf 751279
Q gi|254780826|r 504 KKQIKI 509 (509)
Q Consensus 504 ~~~~~v 509 (509)
+|++++
T Consensus 251 ~~~~~~ 256 (264)
T PRK13546 251 EFRNKL 256 (264)
T ss_pred HHHHHH
T ss_conf 987566
No 210
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=79.07 E-value=0.87 Score=25.20 Aligned_cols=20 Identities=35% Similarity=0.522 Sum_probs=16.6
Q ss_pred CEEEEEEECCCCCCCCCCCC
Q ss_conf 70279983354311122247
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d 237 (509)
+....+.|.||.|||||..-
T Consensus 28 G~~vaIvG~sGsGKSTLl~l 47 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARL 47 (173)
T ss_pred CCEEEEECCCCCHHHHHHHH
T ss_conf 99999999999809999999
No 211
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=79.02 E-value=0.93 Score=25.02 Aligned_cols=14 Identities=7% Similarity=0.086 Sum_probs=5.3
Q ss_pred CCCCCCCHHHHHHH
Q ss_conf 50015683153899
Q gi|254780826|r 388 APFMPRDPVQYGNI 401 (509)
Q Consensus 388 ~PF~~~~p~~ya~l 401 (509)
+|-.=+||..-..|
T Consensus 509 EPSIGLHqrDn~rL 522 (935)
T COG0178 509 EPSIGLHQRDNERL 522 (935)
T ss_pred CCCCCCCHHHHHHH
T ss_conf 88667772308999
No 212
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=78.96 E-value=0.88 Score=25.19 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=17.1
Q ss_pred CCEEEEEEECCCCCCCCCCCC
Q ss_conf 870279983354311122247
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~d 237 (509)
.+....+-|-||+|||||-.-
T Consensus 29 ~G~~v~ivG~sGsGKSTLl~l 49 (220)
T cd03245 29 AGEKVAIIGRVGSGKSTLLKL 49 (220)
T ss_pred CCCEEEEECCCCCHHHHHHHH
T ss_conf 999999999999859999999
No 213
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=78.92 E-value=0.85 Score=25.27 Aligned_cols=55 Identities=16% Similarity=0.114 Sum_probs=30.8
Q ss_pred HCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHCCCCCCCCHHHHHHHHH---HHHHHHCCEEEEE
Q ss_conf 418588999997423245666200012565312100105001568315389999---9998819809998
Q gi|254780826|r 350 YLNPEKAVYYFLSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNILK---DYIVKYCVDCWLV 416 (509)
Q Consensus 350 klt~~qa~~~F~sGyT~k~agte~g~~ep~~tfs~cFg~PF~~~~p~~ya~ll~---~~i~~~~~~vyLv 416 (509)
.||-.|-.---+ .-.-+.+|.-..- -+|+--+.|..-.+++. +.-++.+..+-+|
T Consensus 132 ~LSGGqkQRVaI---------A~aLa~~P~iLll---DEPTs~LD~~~~~~i~~ll~~L~~e~g~Tii~v 189 (276)
T PRK13634 132 ELSGGQMRRVAI---------AGVLAMEPEVLVL---DEPTAGLDPKGRKEIMEMFYKLHKEKGLTTVLV 189 (276)
T ss_pred HCCHHHHHHHHH---------HHHHHCCCCEEEE---CCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 189999999999---------9999729998997---698542799999999999999999619999998
No 214
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=78.82 E-value=0.9 Score=25.11 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=17.1
Q ss_pred CCCEEEEEEECCCCCCCCCCCC
Q ss_conf 7870279983354311122247
Q gi|254780826|r 216 EKEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 216 ~~~d~alfFGLSGTGKTTLS~d 237 (509)
.| ....+.|-||+|||||.--
T Consensus 32 ~G-e~~aiiG~nGsGKSTLl~~ 52 (286)
T PRK13646 32 QG-KYYAIVGQTGSGKSTLIQN 52 (286)
T ss_pred CC-CEEEEECCCCCHHHHHHHH
T ss_conf 99-8999999999819999999
No 215
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=78.81 E-value=0.95 Score=24.95 Aligned_cols=26 Identities=38% Similarity=0.479 Sum_probs=18.9
Q ss_pred CCCCCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 2453477787027998335431112224
Q gi|254780826|r 209 CSINMDKEKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 209 csan~~~~~~d~alfFGLSGTGKTTLS~ 236 (509)
-+..+. .| +....-|-||.|||||-.
T Consensus 20 isl~i~-~G-e~v~i~G~sGsGKSTLl~ 45 (166)
T cd03223 20 LSFEIK-PG-DRLLITGPSGTGKSSLFR 45 (166)
T ss_pred EEEEEC-CC-CEEEEECCCCCCHHHHHH
T ss_conf 588988-99-999999589998899999
No 216
>PRK13544 consensus
Probab=78.78 E-value=0.91 Score=25.07 Aligned_cols=20 Identities=35% Similarity=0.635 Sum_probs=16.6
Q ss_pred CCEEEEEEECCCCCCCCCCC
Q ss_conf 87027998335431112224
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~ 236 (509)
.++...+-|.+|+|||||--
T Consensus 26 ~Gei~~l~G~NGsGKSTLl~ 45 (208)
T PRK13544 26 QNSLTLVIGNNGSGKTSLLR 45 (208)
T ss_pred CCCEEEEECCCCCCHHHHHH
T ss_conf 99499999999998999999
No 217
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=78.75 E-value=0.75 Score=25.62 Aligned_cols=35 Identities=26% Similarity=0.368 Sum_probs=23.5
Q ss_pred CEEEEEEECCCCCCCCCCCCC--------CCEEEECCCEEECC
Q ss_conf 702799833543111222478--------86133031102156
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSASV--------DRFLIGDDEHGWSK 252 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d~--------~r~LigDDehgW~d 252 (509)
+.+..+||++++|||||+.+- ...+.-|-||..+.
T Consensus 55 GRivei~G~essGKTtlal~~ia~aQk~gg~~~~iDaE~a~d~ 97 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDP 97 (325)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHCCCH
T ss_conf 8089998898777999999999998735983999962542598
No 218
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=78.69 E-value=0.93 Score=25.01 Aligned_cols=19 Identities=42% Similarity=0.585 Sum_probs=16.4
Q ss_pred CCEEEEEEECCCCCCCCCC
Q ss_conf 8702799833543111222
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLS 235 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS 235 (509)
.+....+.|.||.|||||-
T Consensus 32 ~Ge~~~llGpnGaGKSTLl 50 (192)
T cd03232 32 PGTLTALMGESGAGKTTLL 50 (192)
T ss_pred CCEEEEEECCCCCCHHHHH
T ss_conf 8839999999999889999
No 219
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=78.67 E-value=0.93 Score=25.03 Aligned_cols=20 Identities=45% Similarity=0.684 Sum_probs=16.7
Q ss_pred CCEEEEEEECCCCCCCCCCC
Q ss_conf 87027998335431112224
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~ 236 (509)
.+.+..+.|.||.|||||..
T Consensus 26 ~Gei~~iiG~nGaGKSTLl~ 45 (248)
T PRK09580 26 PGEVHAIMGPNGSGKSTLSA 45 (248)
T ss_pred CCCEEEEECCCCCCHHHHHH
T ss_conf 99799999999999999999
No 220
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=78.65 E-value=1 Score=24.76 Aligned_cols=23 Identities=39% Similarity=0.427 Sum_probs=17.8
Q ss_pred CCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 77787027998335431112224
Q gi|254780826|r 214 DKEKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 214 ~~~~~d~alfFGLSGTGKTTLS~ 236 (509)
+..++--.++.||+|+||||+-.
T Consensus 5 f~kk~~kililG~~~sGKTsil~ 27 (168)
T cd04149 5 FGNKEMRILMLGLDAAGKTTILY 27 (168)
T ss_pred CCCCEEEEEEECCCCCCHHHHHH
T ss_conf 47888899999999999899999
No 221
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=78.60 E-value=0.87 Score=25.22 Aligned_cols=20 Identities=35% Similarity=0.635 Sum_probs=16.9
Q ss_pred CCEEEEEEECCCCCCCCCCC
Q ss_conf 87027998335431112224
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~ 236 (509)
.+.+..+.|.||.|||||.-
T Consensus 31 ~Gei~aiiG~nGsGKSTL~~ 50 (252)
T CHL00131 31 AGEIHAIMGPNGSGKSTLSK 50 (252)
T ss_pred CCCEEEEECCCCCCHHHHHH
T ss_conf 99899999999999999999
No 222
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=78.59 E-value=0.7 Score=25.83 Aligned_cols=21 Identities=38% Similarity=0.507 Sum_probs=16.5
Q ss_pred CCEEEEEEECCCCCCCCCCCC
Q ss_conf 870279983354311122247
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~d 237 (509)
++--.++.||+|+|||||-..
T Consensus 14 k~~KililG~~~sGKTsil~~ 34 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQ 34 (174)
T ss_pred CEEEEEEECCCCCCHHHHHHH
T ss_conf 779999998999988999999
No 223
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=78.59 E-value=0.91 Score=25.09 Aligned_cols=57 Identities=12% Similarity=0.128 Sum_probs=33.1
Q ss_pred HHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHCCCCCCCCHHHHHHHHH---HHHHHHCCEEEEEE
Q ss_conf 4418588999997423245666200012565312100105001568315389999---99988198099981
Q gi|254780826|r 349 AYLNPEKAVYYFLSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNILK---DYIVKYCVDCWLVN 417 (509)
Q Consensus 349 sklt~~qa~~~F~sGyT~k~agte~g~~ep~~tfs~cFg~PF~~~~p~~ya~ll~---~~i~~~~~~vyLvN 417 (509)
..||-.|-.---+. -.-+.+|.-.+ +-+|+--+.|....+++. +..++++..+-+|-
T Consensus 136 ~~LSGGQrQRvaIA---------~aLa~~P~lLi---lDEPTs~LD~~~~~~i~~~l~~l~~~~g~Tvi~iT 195 (276)
T PRK13650 136 ARLSGGQKQRVAIA---------GAVAMRPKIII---LDEATSMLDPEGRLELIKTIKNIRDDYQLTVISIT 195 (276)
T ss_pred HHCCHHHHHHHHHH---------HHHHCCCCEEE---EECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 33899999999999---------99973999999---83886658999999999999999984298999995
No 224
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=78.51 E-value=0.95 Score=24.96 Aligned_cols=19 Identities=32% Similarity=0.513 Sum_probs=16.2
Q ss_pred CEEEEEEECCCCCCCCCCC
Q ss_conf 7027998335431112224
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~ 236 (509)
+....+.|-||+|||||..
T Consensus 29 G~~iaIvG~sGsGKSTLl~ 47 (238)
T cd03249 29 GKTVALVGSSGCGKSTVVS 47 (238)
T ss_pred CCEEEEECCCCCCHHHHHH
T ss_conf 9999999999998999999
No 225
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=78.45 E-value=0.8 Score=25.47 Aligned_cols=18 Identities=44% Similarity=0.702 Sum_probs=15.4
Q ss_pred EEEEEEECCCCCCCCCCC
Q ss_conf 027998335431112224
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~ 236 (509)
...|++|..|||||.|.-
T Consensus 167 kGvLLyGPPGtGKTllAk 184 (390)
T PRK03992 167 KGVLLYGPPGTGKTLLAK 184 (390)
T ss_pred CEEEEECCCCCCHHHHHH
T ss_conf 727868989997899999
No 226
>PRK10895 putative ABC transporter ATP-binding protein YhbG; Provisional
Probab=78.42 E-value=0.94 Score=24.97 Aligned_cols=20 Identities=30% Similarity=0.426 Sum_probs=16.5
Q ss_pred CCCEEEEEEECCCCCCCCCCC
Q ss_conf 787027998335431112224
Q gi|254780826|r 216 EKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 216 ~~~d~alfFGLSGTGKTTLS~ 236 (509)
.| .+..+.|.+|.|||||-.
T Consensus 28 ~G-ei~~liGpNGaGKSTLl~ 47 (241)
T PRK10895 28 SG-EIVGLLGPNGAGKTTTFY 47 (241)
T ss_pred CC-CEEEEECCCCCCHHHHHH
T ss_conf 99-799998899986999999
No 227
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=78.41 E-value=0.93 Score=25.01 Aligned_cols=18 Identities=39% Similarity=0.650 Sum_probs=15.9
Q ss_pred CEEEEEEECCCCCCCCCC
Q ss_conf 702799833543111222
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLS 235 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS 235 (509)
+....+.|.||.|||||-
T Consensus 35 Gei~~ilGpnGaGKSTLl 52 (194)
T cd03213 35 GELTAIMGPSGAGKSTLL 52 (194)
T ss_pred CEEEEEECCCCCHHHHHH
T ss_conf 819999989995199999
No 228
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=78.29 E-value=1.1 Score=24.61 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=9.8
Q ss_pred EEEEEEECCCCCCCCCCCCCC
Q ss_conf 027998335431112224788
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSASVD 239 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d~~ 239 (509)
++.||+-..=.||.-|+..|+
T Consensus 324 ~vQL~YQIal~GrkdL~lAPd 344 (643)
T PRK07994 324 DIQLYYQTLLIGRKELPYAPD 344 (643)
T ss_pred HHHHHHHHHHHHHHHCCCCCC
T ss_conf 999999999830200466987
No 229
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=78.24 E-value=0.95 Score=24.97 Aligned_cols=67 Identities=10% Similarity=0.078 Sum_probs=32.4
Q ss_pred HHHCCHHHHHHHHHHHCCCCCCC-CCCCCCCCCCEEEHHHCCCCCCCCHHHHHHHH---HHHHHHHCCEEEEEE
Q ss_conf 44418588999997423245666-20001256531210010500156831538999---999988198099981
Q gi|254780826|r 348 VAYLNPEKAVYYFLSGYTAKVAG-TEKGVLKPEATFSACFGAPFMPRDPVQYGNIL---KDYIVKYCVDCWLVN 417 (509)
Q Consensus 348 vsklt~~qa~~~F~sGyT~k~ag-te~g~~ep~~tfs~cFg~PF~~~~p~~ya~ll---~~~i~~~~~~vyLvN 417 (509)
+..||..|..--.+.---+.... .-.-..+|.-.+- =+|+--+.|..-.+++ .+.-++++..+-+|-
T Consensus 143 ~~~LSGGq~qRv~iAraL~~l~~~~~al~~~P~lLlL---DEPts~LD~~~~~~i~~~l~~l~~e~g~tvl~vt 213 (273)
T PRK13547 143 VTTLSGGELARVQFARVLAQLWPPDPGAAQPPRYLLL---DEPTAALDLAHQHRLLDTVRRLAREWNLGVLAIV 213 (273)
T ss_pred CHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEE---CCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 1126999999999999998510111013689868997---2874448999999999999999983798999998
No 230
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=78.18 E-value=0.99 Score=24.83 Aligned_cols=19 Identities=37% Similarity=0.466 Sum_probs=16.3
Q ss_pred CEEEEEEECCCCCCCCCCC
Q ss_conf 7027998335431112224
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~ 236 (509)
+....+.|.+|.|||||--
T Consensus 26 Ge~~~l~G~NGsGKSTLlk 44 (201)
T cd03231 26 GEALQVTGPNGSGKTTLLR 44 (201)
T ss_pred CCEEEEECCCCCCHHHHHH
T ss_conf 9599999999999999999
No 231
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=78.17 E-value=0.96 Score=24.94 Aligned_cols=18 Identities=39% Similarity=0.567 Sum_probs=13.4
Q ss_pred CEEEEEEECCCCCCCCCC
Q ss_conf 702799833543111222
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLS 235 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS 235 (509)
+....+.|.||.|||||-
T Consensus 43 GE~~~llGpSGsGKSTLl 60 (378)
T PRK09452 43 GEFLTLLGPSGCGKTTVL 60 (378)
T ss_pred CCEEEEECCCCCHHHHHH
T ss_conf 989999989997699999
No 232
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=78.17 E-value=0.73 Score=25.72 Aligned_cols=17 Identities=41% Similarity=0.470 Sum_probs=14.0
Q ss_pred EEEEECCCCCCCCCCCC
Q ss_conf 79983354311122247
Q gi|254780826|r 221 ALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 221 alfFGLSGTGKTTLS~d 237 (509)
...-|.||+|||||+..
T Consensus 2 IgI~G~sgsGKTT~a~~ 18 (198)
T cd02023 2 IGIAGGSGSGKTTVAEE 18 (198)
T ss_pred EEEECCCCCCHHHHHHH
T ss_conf 89889998859999999
No 233
>KOG3308 consensus
Probab=78.06 E-value=0.92 Score=25.04 Aligned_cols=39 Identities=33% Similarity=0.336 Sum_probs=27.0
Q ss_pred EEEEECCC---CCCCCCCCC-----CCCEEEECCCEEECCCCCCCCC
Q ss_conf 79983354---311122247-----8861330311021567412345
Q gi|254780826|r 221 ALFFGLSG---TGKTTLSAS-----VDRFLIGDDEHGWSKEGVFNFE 259 (509)
Q Consensus 221 alfFGLSG---TGKTTLS~d-----~~r~LigDDehgW~d~gvfn~E 259 (509)
++..|+|| +|||||... |+..||..|+.--.++-|---+
T Consensus 4 ~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyKp~~Ei~v~~ 50 (225)
T KOG3308 4 TLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYKPENEIEVDY 50 (225)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHCCC
T ss_conf 89998642467877689999998736874640223467553421123
No 234
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=78.05 E-value=1 Score=24.81 Aligned_cols=18 Identities=39% Similarity=0.501 Sum_probs=15.9
Q ss_pred CEEEEEEECCCCCCCCCC
Q ss_conf 702799833543111222
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLS 235 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS 235 (509)
+++..+.|.+|+|||||-
T Consensus 26 ge~~~l~G~NGsGKTTl~ 43 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLL 43 (144)
T ss_pred CCEEEEECCCCCCHHHHH
T ss_conf 999999989998499999
No 235
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=77.87 E-value=1 Score=24.74 Aligned_cols=20 Identities=30% Similarity=0.539 Sum_probs=16.4
Q ss_pred CCEEEEEEECCCCCCCCCCC
Q ss_conf 87027998335431112224
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~ 236 (509)
.+.+..+.|.+|.|||||--
T Consensus 29 ~Gei~~LiGpNGaGKSTLlk 48 (251)
T PRK09544 29 PGKILTLLGPNGAGKSTLVR 48 (251)
T ss_pred CCCEEEEECCCCCCHHHHHH
T ss_conf 99799999899988999999
No 236
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=77.84 E-value=1 Score=24.74 Aligned_cols=57 Identities=12% Similarity=0.026 Sum_probs=30.6
Q ss_pred HHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHCCCCCCCCHHHHHHH---HHHHHHHHCCEEEEEE
Q ss_conf 44185889999974232456662000125653121001050015683153899---9999988198099981
Q gi|254780826|r 349 AYLNPEKAVYYFLSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNI---LKDYIVKYCVDCWLVN 417 (509)
Q Consensus 349 sklt~~qa~~~F~sGyT~k~agte~g~~ep~~tfs~cFg~PF~~~~p~~ya~l---l~~~i~~~~~~vyLvN 417 (509)
..||-.|-.-.-+ .-.-+.+|+-.+- -+|+--+.|..-.++ +.+..++++..+-++-
T Consensus 96 ~~LSGGqkQrv~i---------A~aL~~~P~ilil---DEPts~LD~~~~~~i~~~i~~l~~~~~~tii~it 155 (180)
T cd03214 96 NELSGGERQRVLL---------ARALAQEPPILLL---DEPTSHLDIAHQIELLELLRRLARERGKTVVMVL 155 (180)
T ss_pred HHCCHHHHHHHHH---------HHHHHHCCCEEEE---CCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 0379999999999---------9999868964788---5875447999999999999999984698999990
No 237
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=77.80 E-value=1 Score=24.68 Aligned_cols=20 Identities=30% Similarity=0.592 Sum_probs=16.8
Q ss_pred CEEEEEEECCCCCCCCCCCC
Q ss_conf 70279983354311122247
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d 237 (509)
++...+.|.||.|||||-.-
T Consensus 25 Ge~~~i~G~nGaGKSTLl~~ 44 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRA 44 (157)
T ss_pred CCEEEEECCCCCCHHHHHHH
T ss_conf 97999987889998999999
No 238
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=77.75 E-value=0.86 Score=25.23 Aligned_cols=17 Identities=47% Similarity=0.622 Sum_probs=14.6
Q ss_pred EEEEEECCCCCCCCCCC
Q ss_conf 27998335431112224
Q gi|254780826|r 220 VALFFGLSGTGKTTLSA 236 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS~ 236 (509)
+.++.||.|.|||||-.
T Consensus 1 sililGLd~aGKTTil~ 17 (167)
T cd04161 1 TLLTVGLDNAGKTTLVS 17 (167)
T ss_pred CEEEEEECCCCHHHHHH
T ss_conf 98999008998899999
No 239
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=77.74 E-value=0.79 Score=25.50 Aligned_cols=51 Identities=31% Similarity=0.398 Sum_probs=28.9
Q ss_pred EEEEEECCCCCCCCCCCCCCCEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCH
Q ss_conf 2799833543111222478861330311021567412345553211013583335135887530110
Q gi|254780826|r 220 VALFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSASCRFGT 286 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS~d~~r~LigDDehgW~d~gvfn~EgGcYaK~i~Ls~~~EP~I~~aa~~~~a 286 (509)
++|.-|-+|||||||+..=- -+|+-+-|.+.|. .+. |....+.+.+.++|-
T Consensus 1 stLi~G~pGsGKT~~a~qfl------------~~~a~~ge~~lyi---s~e-E~~~~l~~~~~~~g~ 51 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFL------------YAGLARGEPGLYV---TLE-ESPEELIENAESLGW 51 (187)
T ss_pred CEEEEECCCCCHHHHHHHHH------------HHHHHCCCCEEEE---EEC-CCHHHHHHHHHHCCC
T ss_conf 91587689999999999999------------9998769978999---950-799999999998399
No 240
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=77.65 E-value=1 Score=24.68 Aligned_cols=19 Identities=37% Similarity=0.450 Sum_probs=16.1
Q ss_pred CEEEEEEECCCCCCCCCCC
Q ss_conf 7027998335431112224
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~ 236 (509)
+....+.|.+|.|||||--
T Consensus 27 G~i~~l~G~NGaGKSTLlk 45 (200)
T PRK13540 27 GGLLHLKGSNGAGKTTLLK 45 (200)
T ss_pred CCEEEEECCCCCCHHHHHH
T ss_conf 9799998899987999999
No 241
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=77.61 E-value=1.3 Score=24.10 Aligned_cols=20 Identities=30% Similarity=0.547 Sum_probs=16.8
Q ss_pred CEEEEEEECCCCCCCCCCCC
Q ss_conf 70279983354311122247
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d 237 (509)
+....+.|.||.|||||..-
T Consensus 26 GEi~~liG~nGaGKSTll~~ 45 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEA 45 (182)
T ss_pred CCEEEEECCCCCCCCHHHHH
T ss_conf 96999988899992637787
No 242
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=77.60 E-value=0.4 Score=27.43 Aligned_cols=135 Identities=21% Similarity=0.203 Sum_probs=60.3
Q ss_pred EEEEEEECCCCCCCCCCCCCCCEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHH-HH-HCCHHH-C------
Q ss_conf 02799833543111222478861330311021567412345553211013583335135887-53-011031-2------
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSA-SC-RFGTVL-E------ 289 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d~~r~LigDDehgW~d~gvfn~EgGcYaK~i~Ls~~~EP~I~~a-a~-~~~ail-E------ 289 (509)
..-||-|..|+||+|+.-.=-|.|.... + .-+...+|..-+..++++ .|.+-.- +. +++.+. +
T Consensus 40 HA~Lf~Gp~GiGK~tlA~~~A~~ll~~~-----~--~~~~~~~~~~~~l~~~~~-~p~~r~i~~~~hpdl~~i~r~~d~k 111 (363)
T PRK07471 40 HAWLIGGPQGIGKATLAYRMARFLLATP-----P--PGGDAVFPPPASLAVDPD-HPVARRIAAGAHGGLLTLERSWNEK 111 (363)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCC-----C--CCCCCCCCCHHHHCCCCC-CCHHHHHHCCCCCCEEEEECCCCCC
T ss_conf 4587679998188999999999985799-----9--777776787053125877-7289999526999846676200113
Q ss_pred ------CCEECCCCC-EECCCCCCCCCEEEEEECCCCC-------CCCCCCCCCCCCE-EEEEECCCCCCCCH-------
Q ss_conf ------400578981-1114788676705898600043-------1000256788726-99960267788760-------
Q gi|254780826|r 290 ------NVVVDECGI-PNFKDSSVTENTRAAYPLNFIH-------NHAPQSIGKHPKH-VIMLAADAFGVLPP------- 347 (509)
Q Consensus 290 ------NV~~d~~~~-~df~d~s~TeNtR~~yp~~~i~-------n~~~~~~~~~p~~-iifl~~d~~gvlPp------- 347 (509)
...+|+-+. ..|..-+-.+.+|=++-++-.+ |+....+...|.+ +|+|++...+-|||
T Consensus 112 ~~~~~~~I~Vd~iR~l~~~~~~~p~~g~~kV~IId~ad~mn~~aaNALLK~LEEPP~~t~fiLit~~~~~llpTI~SRCq 191 (363)
T PRK07471 112 GKRLRTVITVDEVRETIGFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLLLLVSHAPARLLPTIRSRCR 191 (363)
T ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHCHHHHHHHHHHHCCCCCCEEEEEEECCHHHCHHHHHHHCC
T ss_conf 33212445399999999997248524896699986878738899999999721589883899863997777799997352
Q ss_pred ---HHHCCHHHHHHHHH
Q ss_conf ---44418588999997
Q gi|254780826|r 348 ---VAYLNPEKAVYYFL 361 (509)
Q Consensus 348 ---vsklt~~qa~~~F~ 361 (509)
+..|++++...+..
T Consensus 192 ~~~~~~l~~~~~~~~L~ 208 (363)
T PRK07471 192 KLRLRPLAPEDVIAALA 208 (363)
T ss_pred CCCCCCCCHHHHHHHHH
T ss_conf 42589959999999999
No 243
>PRK12377 putative replication protein; Provisional
Probab=77.51 E-value=0.88 Score=25.17 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=19.4
Q ss_pred CCEEEEEEECCCCCCCCCCCCCCCE
Q ss_conf 8702799833543111222478861
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSASVDRF 241 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~d~~r~ 241 (509)
+..-.+|.|.+|||||.|++.=...
T Consensus 100 ~~~NlIf~G~pGtGKTHLA~AIg~~ 124 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNR 124 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 8860899899998788999999999
No 244
>TIGR01978 sufC FeS assembly ATPase SufC; InterPro: IPR010230 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] . FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins , . It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly . The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA . SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA , acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins . Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen . This entry represents SufC, which acts as an ATPase in the SUF system. SufC belongs to the ATP-binding cassette transporter family (IPR003439 from INTERPRO) but is no longer thought to be part of a transporter. The complex is reported as cytosolic or associated with the membrane.; GO: 0005524 ATP binding, 0006810 transport.
Probab=77.50 E-value=1.3 Score=24.14 Aligned_cols=30 Identities=27% Similarity=0.596 Sum_probs=22.7
Q ss_pred CHHHHHHHHHHHHHHHCCEE----EE---EECCCCCC
Q ss_conf 83153899999998819809----99---81674688
Q gi|254780826|r 394 DPVQYGNILKDYIVKYCVDC----WL---VNTGWTAG 423 (509)
Q Consensus 394 ~p~~ya~ll~~~i~~~~~~v----yL---vNTGw~Gg 423 (509)
....+.++|.++++..+.+- |+ ||.|.+||
T Consensus 115 ~~~~F~~~l~~~~~~l~m~~~~d~~l~R~lNeGFSGG 151 (248)
T TIGR01978 115 DLLDFEKLLKEKLALLDMDELSDEFLNRSLNEGFSGG 151 (248)
T ss_pred CHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCC
T ss_conf 9889999999999985688313887117787454387
No 245
>pfam01695 IstB IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Probab=77.40 E-value=0.82 Score=25.39 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=19.6
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCCCEE
Q ss_conf 787027998335431112224788613
Q gi|254780826|r 216 EKEDVALFFGLSGTGKTTLSASVDRFL 242 (509)
Q Consensus 216 ~~~d~alfFGLSGTGKTTLS~d~~r~L 242 (509)
.+ .-.+|+|.+|||||-|++.-.+.+
T Consensus 46 ~~-~Nlll~G~~GtGKThLA~Ai~~~~ 71 (178)
T pfam01695 46 QA-ENLLLLGPPGVGKTHLACALGHQA 71 (178)
T ss_pred CC-CCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 58-768998999987899999999999
No 246
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=77.35 E-value=0.86 Score=25.26 Aligned_cols=26 Identities=12% Similarity=-0.249 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHCCEEEEEECCCC
Q ss_conf 15389999999881980999816746
Q gi|254780826|r 396 VQYGNILKDYIVKYCVDCWLVNTGWT 421 (509)
Q Consensus 396 ~~ya~ll~~~i~~~~~~vyLvNTGw~ 421 (509)
......|.++.+++++.+.++|---.
T Consensus 113 ~~~~~~L~~~Ak~~~itvi~i~~v~~ 138 (165)
T cd01120 113 DEELRELLERARKGGVTVIFTLQVPS 138 (165)
T ss_pred HHHHHHHHHHHHCCCCEEEEEEEEEC
T ss_conf 99999999999779828999998433
No 247
>PRK06547 hypothetical protein; Provisional
Probab=77.33 E-value=1.1 Score=24.63 Aligned_cols=33 Identities=39% Similarity=0.566 Sum_probs=21.1
Q ss_pred EEEEEEECCCCCCCCCCCC-----CCCEEEECCCE--EEC
Q ss_conf 0279983354311122247-----88613303110--215
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS-----VDRFLIGDDEH--GWS 251 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d-----~~r~LigDDeh--gW~ 251 (509)
-+.+.=|.||.|||||... +.-.+|.=|.. ||+
T Consensus 16 ~iVaIDG~sGaGKTTLA~~La~~~~~~~vvHmDD~Y~GW~ 55 (184)
T PRK06547 16 ITVLIDGRSGSGKTTLAGELAACWEGSQLVHLDDLYPGWD 55 (184)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCC
T ss_conf 9999868998888999999997457982897057777765
No 248
>TIGR01425 SRP54_euk signal recognition particle protein SRP54; InterPro: IPR006325 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes , . SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor . In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. This entry represents the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species.; GO: 0005525 GTP binding, 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle.
Probab=77.29 E-value=1.4 Score=23.93 Aligned_cols=51 Identities=37% Similarity=0.561 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHC-CCCCE-EE--EECCCCC--------CCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 87789999998624-10787-99--3124534--------77787027998335431112224
Q gi|254780826|r 186 EIKKSVFTYLNHIF-PERGI-MP--MHCSINM--------DKEKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 186 EiKKsiFtvmny~l-p~~g~-lp--mHcsan~--------~~~~~d~alfFGLSGTGKTTLS~ 236 (509)
=|+++||.=+=-++ |..-. -| +..|.+. -|.+..|..|-||=|.||||--+
T Consensus 77 ~iq~~vF~EL~~LvDp~~~APkPkklststktinGkk~~p~Kgk~~ViMfVGLQGaGKTTtct 139 (453)
T TIGR01425 77 LIQKAVFEELCNLVDPGVEAPKPKKLSTSTKTINGKKFTPKKGKSSVIMFVGLQGAGKTTTCT 139 (453)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCEEECCCCCCEEEEEEECCCCCHHHHHH
T ss_conf 999989999897608632346875333211010350341156882158886214887156687
No 249
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=77.24 E-value=1.1 Score=24.60 Aligned_cols=20 Identities=25% Similarity=0.503 Sum_probs=16.1
Q ss_pred CCEEEEEEECCCCCCCCCCC
Q ss_conf 87027998335431112224
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~ 236 (509)
.+....+.|.||.|||||-.
T Consensus 26 ~Ge~~~IvG~sGsGKSTLl~ 45 (218)
T cd03290 26 TGQLTMIVGQVGCGKSSLLL 45 (218)
T ss_pred CCCEEEEECCCCCCHHHHHH
T ss_conf 99999999999980999999
No 250
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=77.12 E-value=1.1 Score=24.61 Aligned_cols=21 Identities=33% Similarity=0.483 Sum_probs=17.1
Q ss_pred CCCEEEEEEECCCCCCCCCCCC
Q ss_conf 7870279983354311122247
Q gi|254780826|r 216 EKEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 216 ~~~d~alfFGLSGTGKTTLS~d 237 (509)
.| ....+.|.+|.|||||-.-
T Consensus 30 ~G-e~~aiiG~NGsGKSTLl~~ 50 (273)
T PRK13647 30 EG-SKTAILGPNGAGKSTLLLH 50 (273)
T ss_pred CC-CEEEEECCCCCHHHHHHHH
T ss_conf 99-8999999999759999999
No 251
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=76.95 E-value=0.94 Score=24.99 Aligned_cols=28 Identities=32% Similarity=0.601 Sum_probs=21.3
Q ss_pred EEEEEECCCCCCCCCCCCCCCEEEECCC
Q ss_conf 2799833543111222478861330311
Q gi|254780826|r 220 VALFFGLSGTGKTTLSASVDRFLIGDDE 247 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS~d~~r~LigDDe 247 (509)
.-||.|..||||||+...-.+.|.+...
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~~~ 53 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCENP 53 (325)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 1003799999789999999999658664
No 252
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=76.92 E-value=1.1 Score=24.43 Aligned_cols=20 Identities=40% Similarity=0.699 Sum_probs=16.7
Q ss_pred CCEEEEEEECCCCCCCCCCC
Q ss_conf 87027998335431112224
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~ 236 (509)
.+.+..+.|.||.|||||-.
T Consensus 25 ~Gei~~iiGpnGaGKSTLl~ 44 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAK 44 (200)
T ss_pred CCCEEEEECCCCCCHHHHHH
T ss_conf 99899999689999999999
No 253
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=76.85 E-value=1.2 Score=24.23 Aligned_cols=18 Identities=33% Similarity=0.451 Sum_probs=14.6
Q ss_pred EEEEEECCCCCCCCCCCC
Q ss_conf 279983354311122247
Q gi|254780826|r 220 VALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS~d 237 (509)
+.-|.|-|++|||||-..
T Consensus 4 Il~ivG~k~SGKTTLie~ 21 (161)
T COG1763 4 ILGIVGYKNSGKTTLIEK 21 (161)
T ss_pred EEEEEECCCCCHHHHHHH
T ss_conf 899996279973428999
No 254
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=76.85 E-value=1.1 Score=24.58 Aligned_cols=19 Identities=42% Similarity=0.674 Sum_probs=16.2
Q ss_pred CEEEEEEECCCCCCCCCCC
Q ss_conf 7027998335431112224
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~ 236 (509)
+....+-|-||.|||||..
T Consensus 40 Ge~vaIvG~sGsGKSTL~~ 58 (226)
T cd03248 40 GEVTALVGPSGSGKSTVVA 58 (226)
T ss_pred CCEEEEECCCCCHHHHHHH
T ss_conf 9999999999984999999
No 255
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=76.79 E-value=1.1 Score=24.58 Aligned_cols=56 Identities=20% Similarity=0.190 Sum_probs=31.1
Q ss_pred HHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHCCCCCCCCHHHHHHHHHH---HHHHHCCEEEEE
Q ss_conf 44185889999974232456662000125653121001050015683153899999---998819809998
Q gi|254780826|r 349 AYLNPEKAVYYFLSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNILKD---YIVKYCVDCWLV 416 (509)
Q Consensus 349 sklt~~qa~~~F~sGyT~k~agte~g~~ep~~tfs~cFg~PF~~~~p~~ya~ll~~---~i~~~~~~vyLv 416 (509)
..||-.|-.---+.. +-+.+|+-.+- -+|+--+.|....+++.- .-++.++.+-+|
T Consensus 139 ~~LSGGqrQRvaIA~---------aLa~~P~ilil---DEPTs~LD~~~~~~i~~ll~~L~~~~~~Tii~i 197 (277)
T PRK13642 139 ARLSGGQKQRVAVAG---------IIALRPEIIIL---DESTSMLDPTGRSEIMRVIHEIKDKYHLTVLSI 197 (277)
T ss_pred HHCCHHHHHHHHHHH---------HHHCCCCEEEE---ECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 228999999999999---------99669999999---588765898999999999999998169899999
No 256
>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321 These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=76.77 E-value=1 Score=24.68 Aligned_cols=74 Identities=18% Similarity=0.205 Sum_probs=52.7
Q ss_pred CCCCCCHHHHHHHHHHHHH--HHCCCCEE----EEEEEEECCHHHCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 7875888999999999999--86279469----97425517832364028722871077899975125421113444566
Q gi|254780826|r 70 NNKYISPADFDTLKADMLD--YIKDKDLF----LQDLVACPHTKNAISVCVVTQYAWHSLFIRNLLKHKEDLGAVPNMMS 143 (509)
Q Consensus 70 ~N~~i~~e~F~~L~~~v~~--yl~~k~ly----v~D~~~Gad~~~rl~vRvite~AwhaLF~~nmFirp~~~e~~~~~pd 143 (509)
.-.|+|++.+..|...++. |-+.++-| =.|.-.+-..--|.+|-+..+.---++-.|-+ ....|.
T Consensus 38 ~~~plt~~~~~~l~~~~l~~th~~~~~~f~~~~E~Dfs~~~~~~~RfRvN~f~QRg~~a~vlR~i---------p~~Ip~ 108 (350)
T TIGR01420 38 GFEPLTPEDTQKLLREILSSTHEKQREEFEENGELDFSFSLPGLARFRVNAFKQRGGVALVLRLI---------PSKIPT 108 (350)
T ss_pred CCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEEEECCCCEEEEHHHHHCCHHHHHHHHC---------CCCCCC
T ss_conf 67898989999999986384565777505650664446630673221220323500064232311---------534621
Q ss_pred CEEEECC-CC
Q ss_conf 1276458-87
Q gi|254780826|r 144 LQVVVLP-DF 152 (509)
Q Consensus 144 ~tI~~aP-~~ 152 (509)
|.-+.+| ..
T Consensus 109 fe~LGLP~~v 118 (350)
T TIGR01420 109 FEELGLPRPV 118 (350)
T ss_pred HHHCCCCHHH
T ss_conf 6663798789
No 257
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=76.76 E-value=1.1 Score=24.43 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=19.6
Q ss_pred ECCCCCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 12453477787027998335431112224
Q gi|254780826|r 208 HCSINMDKEKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 208 Hcsan~~~~~~d~alfFGLSGTGKTTLS~ 236 (509)
+-|.++. .| ....+.|.+|.|||||--
T Consensus 18 disl~i~-~G-~i~~i~G~NGsGKSTLlk 44 (195)
T PRK13541 18 DLSITFL-PS-AITYIKGANGCGKSSLLR 44 (195)
T ss_pred EEEEEEC-CC-CEEEEECCCCCCHHHHHH
T ss_conf 7777877-99-799999999981999999
No 258
>PRK01889 ribosome-associated GTPase; Reviewed
Probab=76.73 E-value=1 Score=24.71 Aligned_cols=34 Identities=26% Similarity=0.370 Sum_probs=23.4
Q ss_pred CEEEEECCCCCC----------CCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 879931245347----------77870279983354311122247
Q gi|254780826|r 203 GIMPMHCSINMD----------KEKEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 203 g~lpmHcsan~~----------~~~~d~alfFGLSGTGKTTLS~d 237 (509)
|+-.+..|+..+ +.| .+.+|.|-||.||+||--.
T Consensus 170 g~~v~~vSa~~~~gl~~L~~~l~~G-kT~vl~G~SGVGKSTLiN~ 213 (353)
T PRK01889 170 GVPVLAVNALDGEGVDALQAWLKPG-KTVALLGSSGVGKSTLVNA 213 (353)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHCC-CEEEEECCCCCCHHHHHHH
T ss_conf 9759999789984789999986349-7899977888669999987
No 259
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=76.72 E-value=0.86 Score=25.26 Aligned_cols=19 Identities=32% Similarity=0.440 Sum_probs=16.5
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
-+.|..|-||+||+|||+.
T Consensus 93 liILigGtsGvGKSTlA~~ 111 (306)
T PRK04220 93 IIILIGGASGVGTSTIAFE 111 (306)
T ss_pred EEEEEECCCCCCHHHHHHH
T ss_conf 7999858998878999999
No 260
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=76.71 E-value=1.1 Score=24.52 Aligned_cols=24 Identities=25% Similarity=0.472 Sum_probs=18.2
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCCC
Q ss_conf 7870279983354311122247886
Q gi|254780826|r 216 EKEDVALFFGLSGTGKTTLSASVDR 240 (509)
Q Consensus 216 ~~~d~alfFGLSGTGKTTLS~d~~r 240 (509)
.| ....+.|.||.|||||..-=.+
T Consensus 33 ~G-e~vaiiG~nGsGKSTL~~~l~G 56 (283)
T PRK13640 33 RG-SWTALIGHNGSGKSTISKLING 56 (283)
T ss_pred CC-CEEEEECCCCCHHHHHHHHHHC
T ss_conf 99-9999999999879999999964
No 261
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=76.61 E-value=1.1 Score=24.48 Aligned_cols=21 Identities=33% Similarity=0.520 Sum_probs=17.2
Q ss_pred CCCEEEEEEECCCCCCCCCCCC
Q ss_conf 7870279983354311122247
Q gi|254780826|r 216 EKEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 216 ~~~d~alfFGLSGTGKTTLS~d 237 (509)
.| ....+.|.||.|||||..-
T Consensus 32 ~G-E~vaivG~nGsGKSTL~k~ 52 (279)
T PRK13635 32 EG-EWVAIVGHNGSGKSTLAKL 52 (279)
T ss_pred CC-CEEEEECCCCCHHHHHHHH
T ss_conf 99-8999999999659999999
No 262
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=76.57 E-value=1.1 Score=24.55 Aligned_cols=17 Identities=41% Similarity=0.616 Sum_probs=14.2
Q ss_pred EEEEEECCCCCCCCCCC
Q ss_conf 27998335431112224
Q gi|254780826|r 220 VALFFGLSGTGKTTLSA 236 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS~ 236 (509)
-++.+|.+|+|||||-+
T Consensus 443 HtlI~GpTGsGKTvll~ 459 (815)
T PRK13873 443 HTLVVGPTGAGKSVLLA 459 (815)
T ss_pred CEEEECCCCCCHHHHHH
T ss_conf 43897889998999999
No 263
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=76.41 E-value=1.1 Score=24.56 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=17.1
Q ss_pred CCEEEEEEECCCCCCCCCCCC
Q ss_conf 870279983354311122247
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~d 237 (509)
.+....+.|.+|.|||||---
T Consensus 32 ~Ge~~~iiGpNGaGKSTLlk~ 52 (265)
T PRK10253 32 DGHFTAIIGPNGCGKSTLLRT 52 (265)
T ss_pred CCCEEEEECCCCCHHHHHHHH
T ss_conf 997999999988399999999
No 264
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=76.41 E-value=1.2 Score=24.32 Aligned_cols=41 Identities=15% Similarity=0.294 Sum_probs=24.3
Q ss_pred CCCCCCEEEHHHCCCCCCCCHHHHHHHHH--HHHHHHCCEEEEEEC
Q ss_conf 12565312100105001568315389999--999881980999816
Q gi|254780826|r 375 VLKPEATFSACFGAPFMPRDPVQYGNILK--DYIVKYCVDCWLVNT 418 (509)
Q Consensus 375 ~~ep~~tfs~cFg~PF~~~~p~~ya~ll~--~~i~~~~~~vyLvNT 418 (509)
+.+|.-.+- -+|+--+.|..-.+++. +.+++.+..+.++--
T Consensus 153 ~~~P~lLlL---DEPt~gLD~~~~~~i~~~l~~l~~~g~tii~vsH 195 (237)
T PRK11614 153 MSQPRLLLL---DEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQ 195 (237)
T ss_pred HCCCCEEEE---ECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 569999999---5975579999999999999999967999999947
No 265
>CHL00181 cbbX CbbX; Provisional
Probab=76.40 E-value=0.99 Score=24.83 Aligned_cols=47 Identities=21% Similarity=0.220 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHCCCC--CEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 887789999998624107--8799312453477787027998335431112224
Q gi|254780826|r 185 GEIKKSVFTYLNHIFPER--GIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 185 GEiKKsiFtvmny~lp~~--g~lpmHcsan~~~~~~d~alfFGLSGTGKTTLS~ 236 (509)
.+.|+.+-.+.+++--++ .-..+. ..... --.+|.|..||||||..-
T Consensus 29 ~~VK~~v~~l~~~~~~~~~R~~~Gl~----~~~~s-~h~vF~GnPGTGKTTVAR 77 (287)
T CHL00181 29 VPVKTRIREIAALLLVDRLRKNLGLV----SSSPG-LHMSFTGSPGTGKTTVAL 77 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCC----CCCCC-CEEEEECCCCCCHHHHHH
T ss_conf 99999999999999999999987999----88876-538887899867999999
No 266
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=76.39 E-value=1.2 Score=24.32 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=18.2
Q ss_pred CCCCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 453477787027998335431112224
Q gi|254780826|r 210 SINMDKEKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 210 san~~~~~~d~alfFGLSGTGKTTLS~ 236 (509)
|..+- .| ....+-|.||.|||||-.
T Consensus 24 sl~i~-~G-e~v~ivG~sGsGKSTLl~ 48 (221)
T cd03244 24 SFSIK-PG-EKVGIVGRTGSGKSSLLL 48 (221)
T ss_pred EEEEC-CC-CEEEEECCCCCCHHHHHH
T ss_conf 89986-99-899999999998999999
No 267
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=76.21 E-value=1.2 Score=24.36 Aligned_cols=20 Identities=35% Similarity=0.459 Sum_probs=16.6
Q ss_pred CCEEEEEEECCCCCCCCCCC
Q ss_conf 87027998335431112224
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~ 236 (509)
.++...+.|.||.|||||--
T Consensus 30 ~Gei~giIG~SGaGKSTLlr 49 (343)
T PRK11153 30 AGQIYGVIGASGAGKSTLIR 49 (343)
T ss_pred CCCEEEEECCCCCHHHHHHH
T ss_conf 99899999999986999999
No 268
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=76.17 E-value=1.1 Score=24.51 Aligned_cols=46 Identities=24% Similarity=0.312 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 8877899999986241078799312453477787027998335431112224
Q gi|254780826|r 185 GEIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 185 GEiKKsiFtvmny~lp~~g~lpmHcsan~~~~~~d~alfFGLSGTGKTTLS~ 236 (509)
.+....+..++.-.++.. +. .....+.+ .+..|.|.+|.||||.-+
T Consensus 167 ~~~~~~l~~~L~~~i~~~---~~--~~~~~~~~-~vi~lvGPTGVGKTTTiA 212 (282)
T TIGR03499 167 ESAWRWLREALENMLPVK---PE--EDEILEQG-GVIALVGPTGVGKTTTLA 212 (282)
T ss_pred HHHHHHHHHHHHHHCCCC---CC--CCCCCCCC-CEEEEECCCCCCHHHHHH
T ss_conf 899999999999647778---87--65544567-279997788875788999
No 269
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=76.15 E-value=1.3 Score=24.07 Aligned_cols=20 Identities=45% Similarity=0.647 Sum_probs=15.3
Q ss_pred CEEEEEEECCCCCCCCCCCC
Q ss_conf 70279983354311122247
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d 237 (509)
.++.|+.|+=|.|||||-..
T Consensus 28 k~i~li~G~NG~GKTTll~A 47 (650)
T TIGR03185 28 KPIILIGGLNGAGKTTLLDA 47 (650)
T ss_pred CCEEEEECCCCCCHHHHHHH
T ss_conf 98799977999978999999
No 270
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=76.07 E-value=1 Score=24.80 Aligned_cols=17 Identities=41% Similarity=0.653 Sum_probs=14.4
Q ss_pred EEEEECCCCCCCCCCCC
Q ss_conf 79983354311122247
Q gi|254780826|r 221 ALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 221 alfFGLSGTGKTTLS~d 237 (509)
.++.||+|+||||+-..
T Consensus 2 IlilGl~~sGKTtil~~ 18 (169)
T cd04158 2 VVTLGLDGAGKTTILFK 18 (169)
T ss_pred EEEECCCCCCHHHHHHH
T ss_conf 99999899988999999
No 271
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE; InterPro: IPR014137 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase..
Probab=76.03 E-value=0.96 Score=24.93 Aligned_cols=38 Identities=37% Similarity=0.641 Sum_probs=24.1
Q ss_pred CCCCEEEEEEECCCCCCCCCCCCCCCEEEECCCEEECCCCCCCCCC
Q ss_conf 7787027998335431112224788613303110215674123455
Q gi|254780826|r 215 KEKEDVALFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEG 260 (509)
Q Consensus 215 ~~~~d~alfFGLSGTGKTTLS~d~~r~LigDDehgW~d~gvfn~Eg 260 (509)
+.| .+....|-||.||+||. |.|+| ---...|-..|.|
T Consensus 36 ~~G-e~~gLLG~SG~GKSTLA----rlLlG---Le~P~~G~v~F~G 73 (267)
T TIGR02769 36 EEG-ETVGLLGRSGCGKSTLA----RLLLG---LEKPAQGEVSFRG 73 (267)
T ss_pred CCC-CEEEECCCCCCCHHHHH----HHHHH---CCCCCCCEEEECC
T ss_conf 377-50552367887377899----99875---0788874047625
No 272
>PRK05480 uridine kinase; Provisional
Probab=75.96 E-value=1 Score=24.80 Aligned_cols=19 Identities=37% Similarity=0.450 Sum_probs=15.8
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
-+...-|.||+||||++..
T Consensus 7 ~iIgIaG~SgSGKTT~a~~ 25 (209)
T PRK05480 7 IIIGIAGGSGSGKTTVAST 25 (209)
T ss_pred EEEEEECCCCCCHHHHHHH
T ss_conf 8999989997789999999
No 273
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=75.84 E-value=1.6 Score=23.53 Aligned_cols=55 Identities=20% Similarity=0.292 Sum_probs=31.6
Q ss_pred HHHCCCCCEEEEECCCCC--CCCCCEEEEEEECCCCCCCCCCCC-CCCEEEECCCEEEC
Q ss_conf 862410787993124534--777870279983354311122247-88613303110215
Q gi|254780826|r 196 NHIFPERGIMPMHCSINM--DKEKEDVALFFGLSGTGKTTLSAS-VDRFLIGDDEHGWS 251 (509)
Q Consensus 196 ny~lp~~g~lpmHcsan~--~~~~~d~alfFGLSGTGKTTLS~d-~~r~LigDDehgW~ 251 (509)
.|.|+.||+.-+.-=.++ .-..+...+.-|.||.||+||--- ... ..-|..++|-
T Consensus 13 tFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaN-Y~~d~G~I~v 70 (235)
T COG4778 13 TFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYAN-YLPDEGQILV 70 (235)
T ss_pred HEEEEECCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHC-CCCCCCEEEE
T ss_conf 167550498885534041577637507996689887688999999851-4788763899
No 274
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=75.80 E-value=0.48 Score=26.92 Aligned_cols=118 Identities=20% Similarity=0.288 Sum_probs=56.0
Q ss_pred EEEEEEECCCCCCCCCCCCCCCEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHCCCEECCCCC
Q ss_conf 02799833543111222478861330311021567412345553211013583335135887530110312400578981
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSASCRFGTVLENVVVDECGI 298 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d~~r~LigDDehgW~d~gvfn~EgGcYaK~i~Ls~~~EP~I~~aa~~~~ailENV~~d~~~~ 298 (509)
..-||-|..|+||||+.-.=-+.|...+++. -|.-.+.+.++..-.|=--.+| .+.+.+.+.+
T Consensus 27 HAyLF~Gp~G~GK~~~A~~~A~~ll~~~~~~------------~~~D~~~~~~~~~~~I~vd~IR--~l~~~~~~~p--- 89 (313)
T PRK05564 27 HASLIVGEDGIGKSILAKEIANKILGKSEQR------------EYVDIIEYKPINKKSIGVDDIR--NIIEEVNKKP--- 89 (313)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCCCCC------------CCCCEEEEECCCCCCCCHHHHH--HHHHHHHHCC---
T ss_conf 5043279998509999999999982899778------------8986588633225699989999--9999984086---
Q ss_pred EECCCCCCCCCEEEEEECCCCC-------CCCCCCCCCCCCEEEE-EEC-CCCCCCCHH---------HHCCHHHHHHHH
Q ss_conf 1114788676705898600043-------1000256788726999-602-677887604---------441858899999
Q gi|254780826|r 299 PNFKDSSVTENTRAAYPLNFIH-------NHAPQSIGKHPKHVIM-LAA-DAFGVLPPV---------AYLNPEKAVYYF 360 (509)
Q Consensus 299 ~df~d~s~TeNtR~~yp~~~i~-------n~~~~~~~~~p~~iif-l~~-d~~gvlPpv---------sklt~~qa~~~F 360 (509)
.+.+|=+|-++..+ |+--......|.+++| |++ ++..+||.| ..+++++...+.
T Consensus 90 --------~~g~~KV~II~~ae~m~~~AaNALLKtLEEPP~~t~fIL~t~~~~~lLpTI~SRCQ~~~f~~l~~~~i~~~L 161 (313)
T PRK05564 90 --------YEGDKKVIIIYKSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEDIEKFI 161 (313)
T ss_pred --------CCCCCEEEEECCHHHHCHHHHHHHHHCCCCCCCCEEEEEEECCHHHCCCHHHCCCEEEECCCCCHHHHHHHH
T ss_conf --------258956999807777589999998455036899858998649835475778706535668998999999999
Q ss_pred H
Q ss_conf 7
Q gi|254780826|r 361 L 361 (509)
Q Consensus 361 ~ 361 (509)
.
T Consensus 162 ~ 162 (313)
T PRK05564 162 S 162 (313)
T ss_pred H
T ss_conf 9
No 275
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=75.75 E-value=0.93 Score=25.02 Aligned_cols=16 Identities=44% Similarity=0.659 Sum_probs=13.8
Q ss_pred EEEEECCCCCCCCCCC
Q ss_conf 7998335431112224
Q gi|254780826|r 221 ALFFGLSGTGKTTLSA 236 (509)
Q Consensus 221 alfFGLSGTGKTTLS~ 236 (509)
.++.|++|+|||||-.
T Consensus 2 il~lG~~~~GKTsll~ 17 (158)
T cd04151 2 ILILGLDNAGKTTILY 17 (158)
T ss_pred EEEECCCCCCHHHHHH
T ss_conf 9999999998999999
No 276
>TIGR01166 cbiO cobalt ABC transporter, ATP-binding protein; InterPro: IPR005876 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. This superfamily includes two groups, one which catalyses the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drives both the process of uptake and efflux.; GO: 0006824 cobalt ion transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=75.66 E-value=1.5 Score=23.59 Aligned_cols=41 Identities=24% Similarity=0.549 Sum_probs=33.2
Q ss_pred CCEEEEEEECCCCCCCCCCCC------C--CCEEEECCCEEECCCCCCC
Q ss_conf 870279983354311122247------8--8613303110215674123
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSAS------V--DRFLIGDDEHGWSKEGVFN 257 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~d------~--~r~LigDDehgW~d~gvfn 257 (509)
.+.+....|-=|.|||||-.. | .+.+|+=.+..||..|...
T Consensus 17 ~G~~~aLlG~NGaGKsTLl~~LnG~LrP~~G~v~~dG~~l~YsrkgL~~ 65 (190)
T TIGR01166 17 RGEVLALLGANGAGKSTLLLHLNGLLRPQSGKVLLDGEPLDYSRKGLLE 65 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCEECCCCCHHHHH
T ss_conf 5716898728998578998874367779755587678540357244675
No 277
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=75.63 E-value=1.3 Score=23.95 Aligned_cols=19 Identities=42% Similarity=0.602 Sum_probs=16.1
Q ss_pred CEEEEEEECCCCCCCCCCC
Q ss_conf 7027998335431112224
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~ 236 (509)
+--.++.|++|+|||||-.
T Consensus 14 ~~Ki~ilG~~~sGKTsll~ 32 (173)
T cd04155 14 EPRILILGLDNAGKTTILK 32 (173)
T ss_pred CCEEEEECCCCCCHHHHHH
T ss_conf 7589999799998899999
No 278
>KOG3354 consensus
Probab=75.51 E-value=1.3 Score=24.03 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=17.1
Q ss_pred CCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 77787027998335431112224
Q gi|254780826|r 214 DKEKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 214 ~~~~~d~alfFGLSGTGKTTLS~ 236 (509)
+.-+ ++.+..|.||+||||.-.
T Consensus 9 ~~~k-~~i~vmGvsGsGKSTigk 30 (191)
T KOG3354 9 GPFK-YVIVVMGVSGSGKSTIGK 30 (191)
T ss_pred CCCC-EEEEEEECCCCCHHHHHH
T ss_conf 7776-059998358877445999
No 279
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=75.50 E-value=1.3 Score=24.09 Aligned_cols=19 Identities=32% Similarity=0.559 Sum_probs=16.1
Q ss_pred CEEEEEEECCCCCCCCCCC
Q ss_conf 7027998335431112224
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~ 236 (509)
+....+.|.+|.|||||--
T Consensus 28 Gei~~liGpNGaGKSTLlk 46 (255)
T PRK11231 28 GKITALIGPNGCGKSTLLK 46 (255)
T ss_pred CCEEEEECCCCCHHHHHHH
T ss_conf 9799999999981999999
No 280
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=75.46 E-value=1.3 Score=24.14 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=17.1
Q ss_pred CCCEEEEEEECCCCCCCCCCCC
Q ss_conf 7870279983354311122247
Q gi|254780826|r 216 EKEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 216 ~~~d~alfFGLSGTGKTTLS~d 237 (509)
.| ....+-|.||+|||||.--
T Consensus 27 ~G-e~vaiiG~nGsGKSTL~~~ 47 (274)
T PRK13644 27 KG-EYIGIIGKNGSGKSTLALH 47 (274)
T ss_pred CC-CEEEEECCCCCHHHHHHHH
T ss_conf 89-9999999999809999999
No 281
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=75.44 E-value=1.3 Score=24.06 Aligned_cols=55 Identities=24% Similarity=0.198 Sum_probs=29.1
Q ss_pred HCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHCCCCCCCCHHHHHHHHHH--HHHHHCCEEEEE
Q ss_conf 4185889999974232456662000125653121001050015683153899999--998819809998
Q gi|254780826|r 350 YLNPEKAVYYFLSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNILKD--YIVKYCVDCWLV 416 (509)
Q Consensus 350 klt~~qa~~~F~sGyT~k~agte~g~~ep~~tfs~cFg~PF~~~~p~~ya~ll~~--~i~~~~~~vyLv 416 (509)
.||..|-.---+.+ .-+.+|+-.+ +-+|.--+.|....+++.- .+++.+..|-+|
T Consensus 161 ~LSGGqkqRVaIA~---------~La~~P~iLl---LDEPTagLDp~~~~~i~~~l~~L~~~G~TVI~v 217 (304)
T PRK13651 161 ELSGGQKRRVALAG---------ILAMEPDFLV---FDEPTAGLDPQGVKEILEIFDTLNKKGKTIILV 217 (304)
T ss_pred CCCHHHHHHHHHHH---------HHHCCCCEEE---ECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 28999999999999---------8845999999---729866589899999999999999779999998
No 282
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=75.33 E-value=0.9 Score=25.11 Aligned_cols=66 Identities=23% Similarity=0.338 Sum_probs=36.1
Q ss_pred CCEEEEEEECCCCCCCCCCCCCCCEEE-ECCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 870279983354311122247886133-0311021567412345553211013583335135887530
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSASVDRFLI-GDDEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSASCR 283 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~d~~r~Li-gDDehgW~d~gvfn~EgGcYaK~i~Ls~~~EP~I~~aa~~ 283 (509)
++..+.+-|-||.|||||-.-=-..+- ..-|.-|.+--.-++...-+-|.+.+=. ..|-||.++++
T Consensus 346 ~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~-Q~p~lf~gTir 412 (559)
T COG4988 346 AGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVS-QNPYLFAGTIR 412 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHEEEEC-CCCCCCCCCHH
T ss_conf 89679998899997899999984757777844888993100068778886724627-99840564188
No 283
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=75.31 E-value=1.4 Score=23.81 Aligned_cols=56 Identities=16% Similarity=0.180 Sum_probs=30.4
Q ss_pred HCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHCCCCCCCCHHHHHHHHH--HHHHHHCCEEEEEEC
Q ss_conf 418588999997423245666200012565312100105001568315389999--999881980999816
Q gi|254780826|r 350 YLNPEKAVYYFLSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNILK--DYIVKYCVDCWLVNT 418 (509)
Q Consensus 350 klt~~qa~~~F~sGyT~k~agte~g~~ep~~tfs~cFg~PF~~~~p~~ya~ll~--~~i~~~~~~vyLvNT 418 (509)
.||-.|-.-.-+.+- -+.+|.-.+ +=+|.--+.|.-..+++. +.+++.+..+-+| |
T Consensus 176 ~LSGGqkQRVaIA~a---------La~~P~iLi---lDEPTagLDp~~~~~i~~li~~l~~~g~Tiilv-T 233 (320)
T PRK13631 176 GLSGGQKRRVAIAGI---------LAIQPEILI---FDEPTAGLDPKGEHEMMQLILDAKANNKTVFVI-T 233 (320)
T ss_pred CCCHHHHHHHHHHHH---------HHCCCCEEE---ECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE-C
T ss_conf 099999999999999---------723999999---758755599899999999999999629999999-4
No 284
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=75.26 E-value=1.2 Score=24.19 Aligned_cols=21 Identities=33% Similarity=0.613 Sum_probs=17.9
Q ss_pred CCEEEEEEECCCCCCCCCCCC
Q ss_conf 870279983354311122247
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~d 237 (509)
.+.+.+.+|.-|+||+||+.-
T Consensus 29 ~GEvhaiMGPNGsGKSTLa~~ 49 (251)
T COG0396 29 EGEVHAIMGPNGSGKSTLAYT 49 (251)
T ss_pred CCCEEEEECCCCCCHHHHHHH
T ss_conf 982899988998788999999
No 285
>PRK06620 hypothetical protein; Validated
Probab=75.22 E-value=0.9 Score=25.11 Aligned_cols=17 Identities=41% Similarity=0.399 Sum_probs=14.7
Q ss_pred EEEEEEECCCCCCCCCC
Q ss_conf 02799833543111222
Q gi|254780826|r 219 DVALFFGLSGTGKTTLS 235 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS 235 (509)
...+.+|.+|+|||.|+
T Consensus 45 ~~l~I~Gp~gSGKTHL~ 61 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLT 61 (214)
T ss_pred CEEEEECCCCCCHHHHH
T ss_conf 55999879999889999
No 286
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein; InterPro: IPR011918 This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins ..
Probab=75.10 E-value=1.2 Score=24.34 Aligned_cols=99 Identities=28% Similarity=0.479 Sum_probs=52.0
Q ss_pred HHHHCCCC-CEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCC------CCCC--EEEECCCEEECCCCCCCCCCCCCCC
Q ss_conf 98624107-8799312453477787027998335431112224------7886--1330311021567412345553211
Q gi|254780826|r 195 LNHIFPER-GIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSA------SVDR--FLIGDDEHGWSKEGVFNFEGGCYAK 265 (509)
Q Consensus 195 mny~lp~~-g~lpmHcsan~~~~~~d~alfFGLSGTGKTTLS~------d~~r--~LigDDehgW~d~gvfn~EgGcYaK 265 (509)
.+|-=|.| +...+ -+.|.--+-+.+..+-|+||=|||||-. ||.. .|++ |
T Consensus 343 V~F~YP~RPd~~aL-~~~~L~v~PGEtvAlVGPSGAGKSTlf~LLLRFYDP~~G~ilLD---------G----------- 401 (576)
T TIGR02204 343 VNFAYPARPDQPAL-DGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLD---------G----------- 401 (576)
T ss_pred CCCCCCCCCCCHHH-CCCCCEECCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEEC---------C-----------
T ss_conf 23258798880423-25772562776588766887627999999986048887657746---------6-----------
Q ss_pred CCCCCCCCCHHHHHHHH---------HCCHHHCCCEECCCCCEECCCCCCCCCEEEEEECCCC
Q ss_conf 01358333513588753---------0110312400578981111478867670589860004
Q gi|254780826|r 266 SINLSKETEPEIFSASC---------RFGTVLENVVVDECGIPNFKDSSVTENTRAAYPLNFI 319 (509)
Q Consensus 266 ~i~Ls~~~EP~I~~aa~---------~~~ailENV~~d~~~~~df~d~s~TeNtR~~yp~~~i 319 (509)
++|- +.+|.-+++.+ =.++++||+ -.|+||=.|..+-.=.|++-==+||
T Consensus 402 -vd~r-~~dP~~lR~~~ALVpQdp~lFa~Sv~eNI---RyGrpDAs~~~V~~AA~aA~A~EFI 459 (576)
T TIGR02204 402 -VDIR-DLDPADLRARIALVPQDPALFAASVLENI---RYGRPDASDEEVEAAARAAHAHEFI 459 (576)
T ss_pred -CCHH-HCCCHHHHHHCCCCCCCCCCCHHCCHHHH---CCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf -4140-16808788344402588641020304421---3599666668999999875410156
No 287
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=75.07 E-value=1.3 Score=23.96 Aligned_cols=20 Identities=35% Similarity=0.566 Sum_probs=16.5
Q ss_pred CCCEEEEEEECCCCCCCCCCC
Q ss_conf 787027998335431112224
Q gi|254780826|r 216 EKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 216 ~~~d~alfFGLSGTGKTTLS~ 236 (509)
.| ....+.|.||.|||||-.
T Consensus 27 ~G-ei~~liGpNGaGKSTLlk 46 (257)
T PRK13548 27 PG-EVVAILGPNGAGKSTLLR 46 (257)
T ss_pred CC-CEEEEECCCCCCHHHHHH
T ss_conf 99-899999999987999999
No 288
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=75.07 E-value=1.2 Score=24.18 Aligned_cols=21 Identities=29% Similarity=0.547 Sum_probs=17.0
Q ss_pred CCCEEEEEEECCCCCCCCCCCC
Q ss_conf 7870279983354311122247
Q gi|254780826|r 216 EKEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 216 ~~~d~alfFGLSGTGKTTLS~d 237 (509)
.| ....+.|.||+|||||-.-
T Consensus 32 ~G-e~~~iiG~nGsGKSTLl~~ 52 (286)
T PRK13641 32 DG-SFVALIGHTGSGKSTLMQH 52 (286)
T ss_pred CC-CEEEEECCCCCHHHHHHHH
T ss_conf 99-9999999998399999999
No 289
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=75.01 E-value=1.1 Score=24.51 Aligned_cols=15 Identities=47% Similarity=0.753 Sum_probs=13.5
Q ss_pred EEEEECCCCCCCCCC
Q ss_conf 799833543111222
Q gi|254780826|r 221 ALFFGLSGTGKTTLS 235 (509)
Q Consensus 221 alfFGLSGTGKTTLS 235 (509)
.++.|++|.|||||-
T Consensus 2 ivilG~~~~GKTsll 16 (167)
T cd04160 2 VLILGLDNAGKTTFL 16 (167)
T ss_pred EEEECCCCCCHHHHH
T ss_conf 999999998888999
No 290
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA; InterPro: IPR014136 This entry represents the Ti-type conjugative transfer relaxase TraA. TraA contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, IPR005053 from INTERPRO) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, IPR014129 from INTERPRO). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer ..
Probab=75.00 E-value=1.4 Score=23.94 Aligned_cols=20 Identities=40% Similarity=0.687 Sum_probs=16.9
Q ss_pred CEEEEEEECCCCCCCCCCCC
Q ss_conf 70279983354311122247
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d 237 (509)
.+.++.-|..||||||+=.-
T Consensus 430 ~~iavVvG~AGtGKSt~L~a 449 (888)
T TIGR02768 430 GDIAVVVGRAGTGKSTMLKA 449 (888)
T ss_pred CCEEEEECCCCCCHHHHHHH
T ss_conf 96489974899876678999
No 291
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=74.95 E-value=1.3 Score=23.98 Aligned_cols=23 Identities=39% Similarity=0.400 Sum_probs=17.7
Q ss_pred CCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 77787027998335431112224
Q gi|254780826|r 214 DKEKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 214 ~~~~~d~alfFGLSGTGKTTLS~ 236 (509)
...++--.++.||+|+|||||-.
T Consensus 9 f~kk~~kililG~~~~GKTsil~ 31 (175)
T smart00177 9 FGNKEMRILMVGLDAAGKTTILY 31 (175)
T ss_pred CCCCEEEEEEECCCCCCHHHHHH
T ss_conf 37888999999889999899999
No 292
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=74.94 E-value=1.3 Score=23.99 Aligned_cols=20 Identities=30% Similarity=0.424 Sum_probs=16.8
Q ss_pred CCCEEEEEEECCCCCCCCCCC
Q ss_conf 787027998335431112224
Q gi|254780826|r 216 EKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 216 ~~~d~alfFGLSGTGKTTLS~ 236 (509)
.| ++..+.|.+|.|||||--
T Consensus 47 ~G-eivgilG~NGaGKSTLl~ 66 (224)
T cd03220 47 RG-ERIGLIGRNGAGKSTLLR 66 (224)
T ss_pred CC-CEEEEECCCCCHHHHHHH
T ss_conf 89-899999799981999999
No 293
>PRK10418 nikD nickel transporter ATP-binding protein; Provisional
Probab=74.91 E-value=1.3 Score=24.05 Aligned_cols=40 Identities=20% Similarity=0.198 Sum_probs=24.6
Q ss_pred CCCCCCCEEEHHHCCCCCCCCHHHHHHHH---HHHHHHHCCEEEEE
Q ss_conf 01256531210010500156831538999---99998819809998
Q gi|254780826|r 374 GVLKPEATFSACFGAPFMPRDPVQYGNIL---KDYIVKYCVDCWLV 416 (509)
Q Consensus 374 g~~ep~~tfs~cFg~PF~~~~p~~ya~ll---~~~i~~~~~~vyLv 416 (509)
=+.+|.-.+- -+|+--+.|....+++ .+..++++..+-+|
T Consensus 155 L~~~P~lLil---DEPTs~LD~~~~~~il~ll~~l~~~~g~tii~v 197 (254)
T PRK10418 155 LLCEAPFIIA---DEPTTDLDVVAQARILDLLESIVQKRALGMLLV 197 (254)
T ss_pred HHCCCCEEEE---CCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEE
T ss_conf 8549998985---587543799999999999999999709979999
No 294
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=74.89 E-value=1.6 Score=23.48 Aligned_cols=20 Identities=50% Similarity=0.634 Sum_probs=16.9
Q ss_pred CCCEEEEEEECCCCCCCCCCC
Q ss_conf 787027998335431112224
Q gi|254780826|r 216 EKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 216 ~~~d~alfFGLSGTGKTTLS~ 236 (509)
.| .+..+.|+||.|||||.-
T Consensus 309 ~G-Ei~gi~G~nGsGKsTL~k 328 (520)
T TIGR03269 309 EG-EIFGIVGTSGAGKTTLSK 328 (520)
T ss_pred CC-CEEEEECCCCCCHHHHHH
T ss_conf 89-689998788887899999
No 295
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=74.77 E-value=1.4 Score=23.88 Aligned_cols=19 Identities=32% Similarity=0.459 Sum_probs=16.0
Q ss_pred CEEEEEEECCCCCCCCCCC
Q ss_conf 7027998335431112224
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~ 236 (509)
+....+-|-||+|||||..
T Consensus 47 Ge~vaIvG~sGsGKSTL~~ 65 (257)
T cd03288 47 GQKVGICGRTGSGKSSLSL 65 (257)
T ss_pred CCEEEEECCCCCCHHHHHH
T ss_conf 9999999999981999999
No 296
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=74.74 E-value=1.3 Score=24.08 Aligned_cols=19 Identities=37% Similarity=0.627 Sum_probs=15.2
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
.-.++-|.||+|||||-..
T Consensus 3 ~LivvsgPSGaGK~Tli~~ 21 (184)
T PRK10078 3 KLIWLMGPSGSGKDSLLAA 21 (184)
T ss_pred EEEEEECCCCCCHHHHHHH
T ss_conf 0999989986999999999
No 297
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=74.61 E-value=1 Score=24.67 Aligned_cols=16 Identities=44% Similarity=0.634 Sum_probs=14.0
Q ss_pred EEEEECCCCCCCCCCC
Q ss_conf 7998335431112224
Q gi|254780826|r 221 ALFFGLSGTGKTTLSA 236 (509)
Q Consensus 221 alfFGLSGTGKTTLS~ 236 (509)
.++.||+|+|||||-.
T Consensus 3 ililG~~~sGKTsll~ 18 (159)
T cd04150 3 ILMVGLDAAGKTTILY 18 (159)
T ss_pred EEEECCCCCCHHHHHH
T ss_conf 9999999999899999
No 298
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=74.56 E-value=1.4 Score=23.88 Aligned_cols=21 Identities=33% Similarity=0.537 Sum_probs=17.2
Q ss_pred CCCEEEEEEECCCCCCCCCCCC
Q ss_conf 7870279983354311122247
Q gi|254780826|r 216 EKEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 216 ~~~d~alfFGLSGTGKTTLS~d 237 (509)
.| ....+.|.||.|||||---
T Consensus 27 ~G-e~vaiiG~nGsGKSTLl~~ 47 (275)
T PRK13639 27 EG-EMIAILGPNGAGKSTLFLH 47 (275)
T ss_pred CC-CEEEEECCCCCHHHHHHHH
T ss_conf 99-8999999999649999999
No 299
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=74.54 E-value=2 Score=22.88 Aligned_cols=36 Identities=25% Similarity=0.376 Sum_probs=23.9
Q ss_pred CCCEEEEEEECCCCCCCCCCCC--------CCCEEEECCCEEEC
Q ss_conf 7870279983354311122247--------88613303110215
Q gi|254780826|r 216 EKEDVALFFGLSGTGKTTLSAS--------VDRFLIGDDEHGWS 251 (509)
Q Consensus 216 ~~~d~alfFGLSGTGKTTLS~d--------~~r~LigDDehgW~ 251 (509)
..+-++=+||..|+|||||... .....-.|-||+.+
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~~l~ 101 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTEHALD 101 (279)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 55358998468876546689999888653798089995899989
No 300
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=74.50 E-value=1.4 Score=23.76 Aligned_cols=24 Identities=33% Similarity=0.553 Sum_probs=17.4
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCCC
Q ss_conf 7870279983354311122247886
Q gi|254780826|r 216 EKEDVALFFGLSGTGKTTLSASVDR 240 (509)
Q Consensus 216 ~~~d~alfFGLSGTGKTTLS~d~~r 240 (509)
.| .-...-|+||.|||||--.=++
T Consensus 29 ~G-E~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 29 QG-EMVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred CC-CEEEEECCCCCCHHHHHHHHHC
T ss_conf 98-6899987888868999999866
No 301
>PRK08853 DNA polymerase III subunits gamma and tau; Validated
Probab=74.49 E-value=3.4 Score=21.26 Aligned_cols=22 Identities=23% Similarity=0.552 Sum_probs=11.9
Q ss_pred CEEEEEEECCCCCCCCCCCCCC
Q ss_conf 7027998335431112224788
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSASVD 239 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d~~ 239 (509)
+++.||+-..=.||--|...|.
T Consensus 322 e~~Ql~YQi~l~gr~dl~~apd 343 (717)
T PRK08853 322 QDVQLYYQIALKGRQDLPLAPN 343 (717)
T ss_pred HHHHHHHHHHHHCCCCCCCCCC
T ss_conf 9999999999703011566996
No 302
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=74.43 E-value=1.4 Score=23.90 Aligned_cols=57 Identities=14% Similarity=0.087 Sum_probs=30.1
Q ss_pred HHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHCCCCCCCCHHHHHHH---HHHHHHHHCCEEEEEE
Q ss_conf 44185889999974232456662000125653121001050015683153899---9999988198099981
Q gi|254780826|r 349 AYLNPEKAVYYFLSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNI---LKDYIVKYCVDCWLVN 417 (509)
Q Consensus 349 sklt~~qa~~~F~sGyT~k~agte~g~~ep~~tfs~cFg~PF~~~~p~~ya~l---l~~~i~~~~~~vyLvN 417 (509)
..||-.|-.---+.+ .-+.+|.-.+ +-+|.--+.|..-.++ +.+.-++++..+-+|-
T Consensus 149 ~~LSGGqkqRVaiA~---------aLa~~P~iLi---lDEPTagLDp~~~~~i~~ll~~L~~~~g~Tvi~vt 208 (289)
T PRK13645 149 FELSGGQKRRVALAG---------IIAMDGNTLV---LDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVT 208 (289)
T ss_pred CCCCHHHHHHHHHHH---------HHHCCCCEEE---EECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 109999999999999---------9963999999---95887648989999999999999995699999991
No 303
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=74.24 E-value=1.5 Score=23.70 Aligned_cols=19 Identities=37% Similarity=0.552 Sum_probs=16.3
Q ss_pred CEEEEEEECCCCCCCCCCC
Q ss_conf 7027998335431112224
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~ 236 (509)
+.+..+.|.+|.|||||-.
T Consensus 26 Gei~gl~G~NGaGKSTLl~ 44 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIK 44 (173)
T ss_pred CCEEEEECCCCCCHHHHHH
T ss_conf 9399998789979999999
No 304
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=74.19 E-value=1.4 Score=23.88 Aligned_cols=27 Identities=22% Similarity=0.454 Sum_probs=18.8
Q ss_pred CCCCCCCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 24534777870279983354311122247
Q gi|254780826|r 209 CSINMDKEKEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 209 csan~~~~~~d~alfFGLSGTGKTTLS~d 237 (509)
.|..+. .| +...+.|-||.|||||-.-
T Consensus 25 Isl~I~-~G-e~vaiiG~nGsGKSTLl~~ 51 (288)
T PRK13643 25 IDLEVK-KG-SYTALIGHTGSGKSTLLQH 51 (288)
T ss_pred EEEEEC-CC-CEEEEECCCCCHHHHHHHH
T ss_conf 367985-99-8999999999479999999
No 305
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=74.18 E-value=1.5 Score=23.74 Aligned_cols=20 Identities=30% Similarity=0.451 Sum_probs=16.6
Q ss_pred CCCEEEEEEECCCCCCCCCCC
Q ss_conf 787027998335431112224
Q gi|254780826|r 216 EKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 216 ~~~d~alfFGLSGTGKTTLS~ 236 (509)
.| .+..+.|.+|.|||||-.
T Consensus 27 ~G-ei~~llG~NGaGKSTLl~ 46 (220)
T cd03263 27 KG-EIFGLLGHNGAGKTTTLK 46 (220)
T ss_pred CC-CEEEEECCCCCCHHHHHH
T ss_conf 99-599999899973999999
No 306
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=74.15 E-value=1.4 Score=23.76 Aligned_cols=27 Identities=22% Similarity=0.495 Sum_probs=19.2
Q ss_pred CCCCCCCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 24534777870279983354311122247
Q gi|254780826|r 209 CSINMDKEKEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 209 csan~~~~~~d~alfFGLSGTGKTTLS~d 237 (509)
-|..+. .| ....+.|-||.|||||-.-
T Consensus 26 Vsl~i~-~G-e~~aiiG~nGsGKSTLl~~ 52 (280)
T PRK13649 26 VNLDIL-DG-SYTAFIGHTGSGKSTIMQL 52 (280)
T ss_pred EEEEEC-CC-CEEEEECCCCCHHHHHHHH
T ss_conf 268987-99-8999995999869999999
No 307
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=73.97 E-value=1.4 Score=23.79 Aligned_cols=40 Identities=13% Similarity=0.271 Sum_probs=23.7
Q ss_pred CCCCCCCEEEHHHCCCCCCCCHHHHHHHHH--HHH-HHHCCEEEEE
Q ss_conf 012565312100105001568315389999--999-8819809998
Q gi|254780826|r 374 GVLKPEATFSACFGAPFMPRDPVQYGNILK--DYI-VKYCVDCWLV 416 (509)
Q Consensus 374 g~~ep~~tfs~cFg~PF~~~~p~~ya~ll~--~~i-~~~~~~vyLv 416 (509)
-+.+|.-.+ +-+|+--+.|..-.+++. +++ ++++..+-++
T Consensus 152 L~~~P~lLl---LDEPtagLDp~~~~~i~~~l~~l~~~~g~Tii~v 194 (277)
T PRK13652 152 LAMEPQVLV---LDEPTAGLDPQGVKELFDFLNALPETYGMTVIFS 194 (277)
T ss_pred HHHCCCEEE---ECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 982999999---8397454899999999999999998509899999
No 308
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=73.92 E-value=3.5 Score=21.19 Aligned_cols=45 Identities=27% Similarity=0.407 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 88877899999986241078799312453477787027998335431112224
Q gi|254780826|r 184 AGEIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 184 aGEiKKsiFtvmny~lp~~g~lpmHcsan~~~~~~d~alfFGLSGTGKTTLS~ 236 (509)
..+.+..+..++.-.+|..+ . .....+ .+..|.|.+|.||||.-|
T Consensus 184 ~~~~~~~l~~~L~~~l~~~~------~-~~~~~~-~vvalVGPTGVGKTTTiA 228 (412)
T PRK05703 184 PREAWRYLLELLANMLPTRV------E-DILEQG-GVVALVGPTGVGKTTTLA 228 (412)
T ss_pred HHHHHHHHHHHHHHHCCCCC------C-CCCCCC-CEEEEECCCCCCHHHHHH
T ss_conf 79999999999997578887------6-654567-369998888875676999
No 309
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=73.84 E-value=1.2 Score=24.28 Aligned_cols=17 Identities=41% Similarity=0.632 Sum_probs=13.8
Q ss_pred EEEEEECCCCCCCCCCC
Q ss_conf 27998335431112224
Q gi|254780826|r 220 VALFFGLSGTGKTTLSA 236 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS~ 236 (509)
-++++|.+|+|||||-+
T Consensus 448 HtlI~G~TGsGKTtl~~ 464 (800)
T PRK13898 448 HTLIIGPTGAGKTVLMN 464 (800)
T ss_pred CEEEECCCCCCHHHHHH
T ss_conf 56998999998999999
No 310
>PRK10416 cell division protein FtsY; Provisional
Probab=73.83 E-value=4.2 Score=20.65 Aligned_cols=143 Identities=22% Similarity=0.267 Sum_probs=62.6
Q ss_pred CCCCCCCCEEEEEEECCCCCCCCCCC--------CCCCEEE----------ECCCEEECC-CCCCCCCCCCCCCCCCCCC
Q ss_conf 53477787027998335431112224--------7886133----------031102156-7412345553211013583
Q gi|254780826|r 211 INMDKEKEDVALFFGLSGTGKTTLSA--------SVDRFLI----------GDDEHGWSK-EGVFNFEGGCYAKSINLSK 271 (509)
Q Consensus 211 an~~~~~~d~alfFGLSGTGKTTLS~--------d~~r~Li----------gDDehgW~d-~gvfn~EgGcYaK~i~Ls~ 271 (509)
.++...+-.|.||.|+-|+||||-.. ...+.|+ .++=-.|.+ .||--+.+ -.+-+
T Consensus 288 l~~~~~~P~VIl~vGvNG~GKTTTigKLA~~~~~~gkkVllaA~DTfRaAAieQL~~w~~r~~v~vi~~-----~~g~D- 361 (499)
T PRK10416 288 LNVEGKTPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQ-----HTGAD- 361 (499)
T ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEC-----CCCCC-
T ss_conf 656899987999974787878989999999999779953788406675689999999842457369836-----89999-
Q ss_pred CCCHHHHHHHHHCCHHHCC--C-EECCCCCEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCHH
Q ss_conf 3351358875301103124--0-057898111147886767058986000431000256788726999602677887604
Q gi|254780826|r 272 ETEPEIFSASCRFGTVLEN--V-VVDECGIPNFKDSSVTENTRAAYPLNFIHNHAPQSIGKHPKHVIMLAADAFGVLPPV 348 (509)
Q Consensus 272 ~~EP~I~~aa~~~~ailEN--V-~~d~~~~~df~d~s~TeNtR~~yp~~~i~n~~~~~~~~~p~~iifl~~d~~gvlPpv 348 (509)
.-..+|+|... +.-++ | .+|--|+..- +....--+.-|.+.........|+. ++|+-|+.-=--
T Consensus 362 -pa~V~~dai~~--a~~~~~DvviiDTAGRl~~-------~~~LM~EL~ki~rvi~k~~~~aP~e-~lLVlDa~tGQn-- 428 (499)
T PRK10416 362 -SASVIFDAIQA--AKARNVDVLIADTAGRLQN-------KSHLMEELKKIVRVMKKLDVEAPHE-VMLTIDASTGQN-- 428 (499)
T ss_pred -HHHHHHHHHHH--HHHCCCCEEEEECCCCCCC-------CHHHHHHHHHHHHHHHHCCCCCCCE-EEEEEECCCCHH--
T ss_conf -79999999999--9972999899857764326-------0999999999999997237899974-899977876778--
Q ss_pred HHCCHHHHHHH-HHHHCC----CCCCCCCCCC
Q ss_conf 44185889999-974232----4566620001
Q gi|254780826|r 349 AYLNPEKAVYY-FLSGYT----AKVAGTEKGV 375 (509)
Q Consensus 349 sklt~~qa~~~-F~sGyT----~k~agte~g~ 375 (509)
.-.||..+ =..|.| +|+-||-+|.
T Consensus 429 ---a~~qak~F~e~~~ltGiIlTKlDGtAKGG 457 (499)
T PRK10416 429 ---AVSQAKLFHEAVGLTGITLTKLDGTAKGG 457 (499)
T ss_pred ---HHHHHHHHHHCCCCCEEEEECCCCCCCCH
T ss_conf ---99999998442799759996567788525
No 311
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=73.82 E-value=7.1 Score=19.19 Aligned_cols=101 Identities=19% Similarity=0.132 Sum_probs=66.9
Q ss_pred CCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCC---CC
Q ss_conf 156831538999999988198099981674688768873207889999999998496024660667887742562---07
Q gi|254780826|r 391 MPRDPVQYGNILKDYIVKYCVDCWLVNTGWTAGSYGEGYRMPLSVTRALLKAIFDNSIKSVPYRVDENFGFSVPL---EV 467 (509)
Q Consensus 391 ~~~~p~~ya~ll~~~i~~~~~~vyLvNTGw~Gg~~g~G~Ri~l~~Tr~ii~ai~~g~l~~~~~~~~~~f~l~iP~---~~ 467 (509)
+|+.|..++-+=.+.+.+-+-.++||||+ |=.+=..-++++|+-+|.|. ---.+.|--|-|. .+
T Consensus 205 ~PlT~eT~g~i~~~~~a~MK~gailIN~a----------RG~vVde~aL~~AL~~G~i~---gA~lDVf~~EPl~~~~pL 271 (324)
T COG0111 205 LPLTPETRGLINAEELAKMKPGAILINAA----------RGGVVDEDALLAALDSGKIA---GAALDVFEEEPLPADSPL 271 (324)
T ss_pred CCCCCHHHCCCCHHHHHCCCCCCEEEECC----------CCCEECHHHHHHHHHCCCCC---EEEEECCCCCCCCCCCHH
T ss_conf 89981222137999994489981999888----------75203589999999709831---599707999999999743
Q ss_pred CCCCHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 98996564976625998999999999999999999875127
Q gi|254780826|r 468 KGVDRKLLNPRDSWNDVEAYDQKMRELLLMFENNAEKKQIK 508 (509)
Q Consensus 468 ~gv~~~~l~P~~~w~d~~~Y~~~a~~L~~~F~~Nf~~~~~~ 508 (509)
-..|.=++-|.-.+...++.. .++.+..+|..+|..+
T Consensus 272 ~~~pnV~~TPHiag~T~ea~~----~~~~~~~~~i~~~l~g 308 (324)
T COG0111 272 WDLPNVILTPHIGGSTDEAQE----RVAEIVAENIVRYLAG 308 (324)
T ss_pred HCCCCEEECCCCCCCCHHHHH----HHHHHHHHHHHHHHCC
T ss_conf 539987787744666679999----9999999999999848
No 312
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=73.80 E-value=1.1 Score=24.47 Aligned_cols=16 Identities=50% Similarity=0.802 Sum_probs=14.0
Q ss_pred EEEEECCCCCCCCCCC
Q ss_conf 7998335431112224
Q gi|254780826|r 221 ALFFGLSGTGKTTLSA 236 (509)
Q Consensus 221 alfFGLSGTGKTTLS~ 236 (509)
.|+.||.|.||||+-.
T Consensus 2 IlilGLd~aGKTTil~ 17 (164)
T cd04162 2 ILVLGLDGAGKTSLLH 17 (164)
T ss_pred EEEECCCCCCHHHHHH
T ss_conf 9999679998999999
No 313
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=73.75 E-value=1.5 Score=23.72 Aligned_cols=24 Identities=33% Similarity=0.545 Sum_probs=18.8
Q ss_pred CEEEEEEECCCCCCCCCCCCCCCEEEEC
Q ss_conf 7027998335431112224788613303
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSASVDRFLIGD 245 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d~~r~LigD 245 (509)
++...+.|++|.|||||- |.|.|+
T Consensus 286 GE~~~i~G~nGsGKSTLl----~~l~G~ 309 (490)
T PRK10938 286 GEHWQIVGPNGAGKSTLL----SLITGD 309 (490)
T ss_pred CCEEEEECCCCCCHHHHH----HHHHCC
T ss_conf 988999867888799999----998088
No 314
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=73.68 E-value=1.3 Score=23.95 Aligned_cols=19 Identities=37% Similarity=0.490 Sum_probs=16.2
Q ss_pred CEEEEEEECCCCCCCCCCC
Q ss_conf 7027998335431112224
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~ 236 (509)
+.+..+.|.+|.|||||-.
T Consensus 27 Gei~~liGpNGaGKSTLlk 45 (271)
T PRK13638 27 SPVTGLVGANGCGKSTLFM 45 (271)
T ss_pred CCEEEEECCCCCCHHHHHH
T ss_conf 9799999999980999999
No 315
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=73.65 E-value=1.5 Score=23.57 Aligned_cols=19 Identities=37% Similarity=0.504 Sum_probs=16.2
Q ss_pred CCEEEEEEECCCCCCCCCC
Q ss_conf 8702799833543111222
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLS 235 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS 235 (509)
.+.+..+.|..|.|||||-
T Consensus 30 ~Gei~gllG~NGaGKSTll 48 (218)
T cd03266 30 PGEVTGLLGPNGAGKTTTL 48 (218)
T ss_pred CCCEEEEECCCCCCHHHHH
T ss_conf 9829999999998499999
No 316
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=73.59 E-value=1.4 Score=23.75 Aligned_cols=19 Identities=42% Similarity=0.622 Sum_probs=15.6
Q ss_pred CCEEEEEEECCCCCCCCCC
Q ss_conf 8702799833543111222
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLS 235 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS 235 (509)
.++...+.|.||.|||||-
T Consensus 28 ~GEfvsilGpSGcGKSTLL 46 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLL 46 (248)
T ss_pred CCCEEEEECCCCCCHHHHH
T ss_conf 9979999899978899999
No 317
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=73.58 E-value=1.8 Score=23.16 Aligned_cols=20 Identities=35% Similarity=0.612 Sum_probs=17.5
Q ss_pred CEEEEEEECCCCCCCCCCCC
Q ss_conf 70279983354311122247
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d 237 (509)
+.+.+++|..|+|||||...
T Consensus 19 G~it~i~G~pG~GKStl~lq 38 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQ 38 (218)
T ss_pred CEEEEEECCCCCCHHHHHHH
T ss_conf 87999989999849999999
No 318
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=73.55 E-value=1.5 Score=23.71 Aligned_cols=18 Identities=56% Similarity=0.722 Sum_probs=14.6
Q ss_pred EEEEEECCCCCCCCCCCC
Q ss_conf 279983354311122247
Q gi|254780826|r 220 VALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS~d 237 (509)
+.-|-|-||+|||||-..
T Consensus 3 ii~ivG~snSGKTTLi~k 20 (159)
T cd03116 3 VIGFVGYSGSGKTTLLEK 20 (159)
T ss_pred EEEEEECCCCCHHHHHHH
T ss_conf 999996799999999999
No 319
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=73.55 E-value=1.5 Score=23.66 Aligned_cols=25 Identities=32% Similarity=0.574 Sum_probs=18.1
Q ss_pred CCCCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 453477787027998335431112224
Q gi|254780826|r 210 SINMDKEKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 210 san~~~~~~d~alfFGLSGTGKTTLS~ 236 (509)
+.++. .| ....+-|-||.|||||-.
T Consensus 22 ~l~i~-~G-e~~aivG~sGsGKSTLl~ 46 (178)
T cd03247 22 SLELK-QG-EKIALLGRSGSGKSTLLQ 46 (178)
T ss_pred EEEEC-CC-CEEEEECCCCCHHHHHHH
T ss_conf 89986-99-999999999875999999
No 320
>TIGR02528 EutP ethanolamine utilization protein, EutP; InterPro: IPR012381 Members of this family function in ethanolamine and propanediol degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose , . More than 10f the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect , . The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella , , . Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 biogenic amine metabolic process.
Probab=73.50 E-value=1.5 Score=23.61 Aligned_cols=17 Identities=47% Similarity=0.800 Sum_probs=15.0
Q ss_pred EEEEECCCCCCCCCCCC
Q ss_conf 79983354311122247
Q gi|254780826|r 221 ALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 221 alfFGLSGTGKTTLS~d 237 (509)
.+|-|-+|-|||||.-.
T Consensus 3 ~~f~G~~gCGKTTL~q~ 19 (144)
T TIGR02528 3 IMFIGSVGCGKTTLTQA 19 (144)
T ss_pred EEEEECCCCCHHHHHHH
T ss_conf 78871588874435431
No 321
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=73.46 E-value=1.3 Score=24.13 Aligned_cols=17 Identities=41% Similarity=0.663 Sum_probs=14.3
Q ss_pred EEEEECCCCCCCCCCCC
Q ss_conf 79983354311122247
Q gi|254780826|r 221 ALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 221 alfFGLSGTGKTTLS~d 237 (509)
.++.|++|+|||||-..
T Consensus 2 ivilG~~~~GKTsil~r 18 (160)
T cd04156 2 VLLLGLDSAGKSTLLYK 18 (160)
T ss_pred EEEECCCCCCHHHHHHH
T ss_conf 99999999999999999
No 322
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ; InterPro: IPR013364 Proteins in this entry are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase (IPR013363 from INTERPRO) of a type-IV secretion-like system of the obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii..
Probab=73.40 E-value=1.2 Score=24.19 Aligned_cols=66 Identities=26% Similarity=0.320 Sum_probs=34.7
Q ss_pred EEEECCHHHHHHHHHH-HHHHHHHCCCCCEEEEECCCC---CCCCCCEEEEEEECCCCCCCCCCCC---------CCCEE
Q ss_conf 5664136788877899-999986241078799312453---4777870279983354311122247---------88613
Q gi|254780826|r 176 ILIGGTSYAGEIKKSV-FTYLNHIFPERGIMPMHCSIN---MDKEKEDVALFFGLSGTGKTTLSAS---------VDRFL 242 (509)
Q Consensus 176 ~lI~GT~YaGEiKKsi-Ftvmny~lp~~g~lpmHcsan---~~~~~~d~alfFGLSGTGKTTLS~d---------~~r~L 242 (509)
=+|=+|-|.-|-==|+ +.|.+--.|.---|.+=--.- .-++| --|.=|-.|+||+||-|. |+|++
T Consensus 105 nf~QAt~~~~~~AislTlRvips~IP~L~~MgiE~DLf~alLP~~G--LGLiCG~TGSGKSTl~AaiY~~~l~t~pdRKi 182 (374)
T TIGR02525 105 NFIQATIGKLETAISLTLRVIPSDIPDLKKMGIEPDLFEALLPKAG--LGLICGETGSGKSTLAAAIYRHCLETYPDRKI 182 (374)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCHHHHHHHCCCCC--CEEECCCCCCCHHHHHHHHHHHHCCCCCCCEE
T ss_conf 0004415554444434420055666513234787689987050037--80221778972899999999985074889707
Q ss_pred E
Q ss_conf 3
Q gi|254780826|r 243 I 243 (509)
Q Consensus 243 i 243 (509)
|
T Consensus 183 v 183 (374)
T TIGR02525 183 V 183 (374)
T ss_pred E
T ss_conf 9
No 323
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=73.32 E-value=1.8 Score=23.17 Aligned_cols=21 Identities=33% Similarity=0.455 Sum_probs=16.6
Q ss_pred CCCEEEEEEECCCCCCCCCCC
Q ss_conf 787027998335431112224
Q gi|254780826|r 216 EKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 216 ~~~d~alfFGLSGTGKTTLS~ 236 (509)
..-.+.+|.||-|+||||-.+
T Consensus 73 ~~~~vI~lvG~~G~GKTTT~A 93 (270)
T PRK06731 73 KEVQTIALIGPTGVGKTTTLA 93 (270)
T ss_pred CCCEEEEEECCCCCCHHHHHH
T ss_conf 998189998889898899999
No 324
>PRK06835 DNA replication protein DnaC; Validated
Probab=73.19 E-value=1.2 Score=24.21 Aligned_cols=27 Identities=48% Similarity=0.784 Sum_probs=19.9
Q ss_pred CCCCCCCEEEEEEECCCCCCCCCCCCCC
Q ss_conf 3477787027998335431112224788
Q gi|254780826|r 212 NMDKEKEDVALFFGLSGTGKTTLSASVD 239 (509)
Q Consensus 212 n~~~~~~d~alfFGLSGTGKTTLS~d~~ 239 (509)
|-++.. ..-+|+|-+|||||-|+.-=.
T Consensus 178 ~F~~~~-~nLlf~G~~G~GKTfLa~~IA 204 (330)
T PRK06835 178 NFDKNN-ENLLFYGNTGTGKTFLSNCIA 204 (330)
T ss_pred HCCCCC-CCEEEECCCCCCHHHHHHHHH
T ss_conf 247888-866988999998899999999
No 325
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=73.19 E-value=1.6 Score=23.45 Aligned_cols=19 Identities=32% Similarity=0.450 Sum_probs=16.1
Q ss_pred CEEEEEEECCCCCCCCCCC
Q ss_conf 7027998335431112224
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~ 236 (509)
+....+.|.+|.|||||-.
T Consensus 26 Gei~~llGpNGAGKSTll~ 44 (232)
T cd03218 26 GEIVGLLGPNGAGKTTTFY 44 (232)
T ss_pred CCEEEEECCCCCCHHHHHH
T ss_conf 9599999999961999999
No 326
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=73.17 E-value=1.7 Score=23.35 Aligned_cols=21 Identities=43% Similarity=0.533 Sum_probs=16.9
Q ss_pred CCCEEEEEEECCCCCCCCCCC
Q ss_conf 787027998335431112224
Q gi|254780826|r 216 EKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 216 ~~~d~alfFGLSGTGKTTLS~ 236 (509)
.++-..++.||+|+|||||-.
T Consensus 15 kk~~kililGl~~sGKTsil~ 35 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILY 35 (182)
T ss_pred CCEEEEEEECCCCCCHHHHHH
T ss_conf 874799999679988999999
No 327
>pfam00025 Arf ADP-ribosylation factor family. Pfam combines a number of different Prosite families together
Probab=73.17 E-value=1.7 Score=23.26 Aligned_cols=23 Identities=39% Similarity=0.469 Sum_probs=18.3
Q ss_pred CCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 77787027998335431112224
Q gi|254780826|r 214 DKEKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 214 ~~~~~d~alfFGLSGTGKTTLS~ 236 (509)
|.+++--.++.|++|+|||||-.
T Consensus 10 ~~~k~~Ki~llG~~~vGKTsll~ 32 (174)
T pfam00025 10 GLNKEMRILILGLDNAGKTTILY 32 (174)
T ss_pred CCCCEEEEEEECCCCCCHHHHHH
T ss_conf 78966699999999998899999
No 328
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=73.07 E-value=1.6 Score=23.41 Aligned_cols=19 Identities=37% Similarity=0.618 Sum_probs=16.2
Q ss_pred CEEEEEEECCCCCCCCCCC
Q ss_conf 7027998335431112224
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~ 236 (509)
+.+..+.|.+|.|||||-.
T Consensus 26 Gei~~lvG~nGaGKSTl~~ 44 (163)
T cd03216 26 GEVHALLGENGAGKSTLMK 44 (163)
T ss_pred CCEEEEECCCCCCHHHHHH
T ss_conf 9899999889989999999
No 329
>TIGR02673 FtsE cell division ATP-binding protein FtsE; InterPro: IPR005286 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). FtsE is an ABC transporter ATP-binding protein. This protein and its permease partner FtsX, localize to the cell division site. In a number of species, the ftsEX gene pair is located next to ftsY, which encodes the signal recognition particle-docki ng protein.; GO: 0005524 ATP binding, 0051301 cell division.
Probab=73.05 E-value=0.91 Score=25.08 Aligned_cols=19 Identities=47% Similarity=0.635 Sum_probs=13.6
Q ss_pred CCEEEEEEECCCCCCCCCC
Q ss_conf 8702799833543111222
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLS 235 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS 235 (509)
+++=.=.=|-||-|||||=
T Consensus 27 kG~F~FLtG~SGAGKttLL 45 (215)
T TIGR02673 27 KGEFLFLTGPSGAGKTTLL 45 (215)
T ss_pred CCCEEEEECCCCCCHHHHH
T ss_conf 7740788727786178999
No 330
>pfam06745 KaiC KaiC. This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Probab=72.91 E-value=1.7 Score=23.22 Aligned_cols=53 Identities=30% Similarity=0.413 Sum_probs=31.5
Q ss_pred CEEEEEEECCCCCCCCCCCCCCCEEEECCCEEECCCCCCC-CCCCCCCCCCCCCCCCCHHHHHHHHHCCH
Q ss_conf 7027998335431112224788613303110215674123-45553211013583335135887530110
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFN-FEGGCYAKSINLSKETEPEIFSASCRFGT 286 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d~~r~LigDDehgW~d~gvfn-~EgGcYaK~i~Ls~~~EP~I~~aa~~~~a 286 (509)
+.+.|..|-+|||||+|+..= --+|.-+ -|.++|. ++. |...++.+.+.++|-
T Consensus 19 gs~~LI~G~pGsGKT~la~qf------------l~~ga~~~ge~~lYi---s~e-e~~~~l~~~~~~~g~ 72 (231)
T pfam06745 19 GRVVLITGGPGTGKTIFGLQF------------LYNGALEYGEPGVYV---TLE-EPPEDLRENAKSFGW 72 (231)
T ss_pred CEEEEEECCCCCCHHHHHHHH------------HHHHHHHCCCCEEEE---EEC-CCHHHHHHHHHHCCC
T ss_conf 969999858972599999999------------999998658968999---813-799999999998299
No 331
>KOG0055 consensus
Probab=72.85 E-value=0.79 Score=25.49 Aligned_cols=177 Identities=23% Similarity=0.271 Sum_probs=85.5
Q ss_pred CCCEEEEEEECCCCCCCCCCC------CCC--CEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHH
Q ss_conf 787027998335431112224------788--613303110215674123455532110135833351358875301103
Q gi|254780826|r 216 EKEDVALFFGLSGTGKTTLSA------SVD--RFLIGDDEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSASCRFGTV 287 (509)
Q Consensus 216 ~~~d~alfFGLSGTGKTTLS~------d~~--r~LigDDehgW~d~gvfn~EgGcYaK~i~Ls~~~EP~I~~aa~~~~ai 287 (509)
.| .+..+.|-||+||+|+-. ||. ..+| |.+.. .++------..|+|=. -||.+|+. ++
T Consensus 378 ~G-~~valVG~SGsGKST~i~LL~RfydP~~G~V~i-DG~di------~~~~~~~Lr~~IglV~-QePvLF~~-----tI 443 (1228)
T KOG0055 378 SG-QTVALVGPSGSGKSTLIQLLARFYDPTSGEVLI-DGEDI------RNLNLKWLRSQIGLVS-QEPVLFAT-----TI 443 (1228)
T ss_pred CC-CEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEE-CCCCC------HHCCHHHHHHHCCEEE-ECHHHHHC-----CH
T ss_conf 99-889998899987999999999726887865997-68560------1226599986468266-01035405-----09
Q ss_pred HCCCEECCCCCEECCCCCCCCCEEEEEECCCC---CCCCCCCCCCCC-------------------CEEEEEECCCCCCC
Q ss_conf 12400578981111478867670589860004---310002567887-------------------26999602677887
Q gi|254780826|r 288 LENVVVDECGIPNFKDSSVTENTRAAYPLNFI---HNHAPQSIGKHP-------------------KHVIMLAADAFGVL 345 (509)
Q Consensus 288 lENV~~d~~~~~df~d~s~TeNtR~~yp~~~i---~n~~~~~~~~~p-------------------~~iifl~~d~~gvl 345 (509)
.||+.+ |+||=+...+.+..|.+---++| |+.-+..++.+- .--|.|---|...|
T Consensus 444 ~eNI~~---G~~dat~~~i~~A~k~Ana~~FI~~lp~g~~T~vge~g~qLSGGQKQRIAIARAli~~P~ILLLDEaTSAL 520 (1228)
T KOG0055 444 RENIRY---GKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSAL 520 (1228)
T ss_pred HHHHHC---CCCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCC
T ss_conf 999856---89765699999999972579999860775126246788777728999999999997189888860741106
Q ss_pred CHHHHCCHHHHHHHHHHHCCCCC-C---CCCCC-----CCCCCCEEEHHHCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 60444185889999974232456-6---62000-----125653121001050015683153899999998819
Q gi|254780826|r 346 PPVAYLNPEKAVYYFLSGYTAKV-A---GTEKG-----VLKPEATFSACFGAPFMPRDPVQYGNILKDYIVKYC 410 (509)
Q Consensus 346 Ppvsklt~~qa~~~F~sGyT~k~-a---gte~g-----~~ep~~tfs~cFg~PF~~~~p~~ya~ll~~~i~~~~ 410 (509)
-+.|.---.+|.-.-+-|-|+-+ | .|=+. +-+--..+-.+=-+-.+..+ +.|++|..---.+..
T Consensus 521 D~~se~iVQ~ALd~a~~GrTTivVaHRLStIrnaD~I~v~~~G~IvE~G~h~ELi~~~-G~Y~~lv~~Q~~~~~ 593 (1228)
T KOG0055 521 DAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTHDELIALG-GIYSSLVRLQELEKA 593 (1228)
T ss_pred CHHHHHHHHHHHHHHHCCCEEEEEEEEHHHHHCCCEEEEEECCEEEEECCHHHHHHCC-CHHHHHHHHHHHHHH
T ss_conf 8788999999999974498699996124666446879999888788736889997474-379999988875410
No 332
>COG1162 Predicted GTPases [General function prediction only]
Probab=72.79 E-value=1.5 Score=23.66 Aligned_cols=36 Identities=25% Similarity=0.355 Sum_probs=24.5
Q ss_pred CCCEEEEECCCCCC--------CCCCEEEEEEECCCCCCCCCCC
Q ss_conf 07879931245347--------7787027998335431112224
Q gi|254780826|r 201 ERGIMPMHCSINMD--------KEKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 201 ~~g~lpmHcsan~~--------~~~~d~alfFGLSGTGKTTLS~ 236 (509)
.-|+-.+--|+..+ .-.+.+++|.|-||-||+||--
T Consensus 139 ~~gy~v~~~s~~~~~~~~~l~~~l~~~~svl~GqSGVGKSSLiN 182 (301)
T COG1162 139 DIGYPVLFVSAKNGDGLEELAELLAGKITVLLGQSGVGKSTLIN 182 (301)
T ss_pred HCCEEEEEECCCCCCCHHHHHHHHCCCEEEEECCCCCCHHHHHH
T ss_conf 67935999537676558999997558849998888776999887
No 333
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=72.76 E-value=1.6 Score=23.39 Aligned_cols=20 Identities=35% Similarity=0.562 Sum_probs=16.7
Q ss_pred CEEEEEEECCCCCCCCCCCC
Q ss_conf 70279983354311122247
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d 237 (509)
+....+.|.+|.|||||-.-
T Consensus 32 Ge~~aiiG~NGaGKSTLl~~ 51 (285)
T PRK13636 32 GEVTAILGGNGAGKSTLFQN 51 (285)
T ss_pred CCEEEEECCCCCHHHHHHHH
T ss_conf 98999999999809999999
No 334
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=72.74 E-value=1.7 Score=23.33 Aligned_cols=58 Identities=12% Similarity=0.058 Sum_probs=30.6
Q ss_pred HHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHCCCCCCCCHHHHHHHH---HHHHHHHCCEEEEE
Q ss_conf 04441858899999742324566620001256531210010500156831538999---99998819809998
Q gi|254780826|r 347 PVAYLNPEKAVYYFLSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNIL---KDYIVKYCVDCWLV 416 (509)
Q Consensus 347 pvsklt~~qa~~~F~sGyT~k~agte~g~~ep~~tfs~cFg~PF~~~~p~~ya~ll---~~~i~~~~~~vyLv 416 (509)
+++.||..|-.--.+.- .=+.+|.-.+-- +|+--+.|..-.+++ .+.-+++++.|-+|
T Consensus 150 ~~~~LSgGq~Qrv~iAr---------aL~~~P~lLlLD---EPt~gLD~~~~~~i~~~i~~l~~~~g~tvl~i 210 (255)
T PRK11300 150 QAGNLAYGQQRRLEIAR---------CMVTQPRILMLD---EPAAGLNPKETKELDELIAELRNEHNVTVLLI 210 (255)
T ss_pred CHHHCCCHHHHHHHHHH---------HHHHCCCEEEEC---CCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 84667948899999999---------997299969981---87546999999999999999997159799999
No 335
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=72.61 E-value=1.5 Score=23.61 Aligned_cols=67 Identities=19% Similarity=0.214 Sum_probs=39.4
Q ss_pred CCCCCCEEEHHHCCCCCCCCHHHHHHHH---HHHHHHHCCE-----------------EEEEECCCCCCCCCCC----CC
Q ss_conf 1256531210010500156831538999---9999881980-----------------9998167468876887----32
Q gi|254780826|r 375 VLKPEATFSACFGAPFMPRDPVQYGNIL---KDYIVKYCVD-----------------CWLVNTGWTAGSYGEG----YR 430 (509)
Q Consensus 375 ~~ep~~tfs~cFg~PF~~~~p~~ya~ll---~~~i~~~~~~-----------------vyLvNTGw~Gg~~g~G----~R 430 (509)
+.+|.-..- -+|.-.+.++.-+++| .+.-++.+.. +.++.-|-+=. .|.- +.
T Consensus 170 ~~~P~lLi~---DEPTsaLD~~~q~~Il~ll~~l~~~~~~t~l~ITHDl~~v~~iaDri~VMy~G~IVE-~G~~~~v~~~ 245 (327)
T PRK11308 170 MLDPDVVVA---DEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADDVMVMYLGRCVE-KGTKEQIFNN 245 (327)
T ss_pred HCCCCEEEE---ECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCEEEEEECCEEEE-ECCHHHHHHC
T ss_conf 428989998---478654699999999999999997009769998698999998699899998988999-7889999727
Q ss_pred CCHHHHHHHHHHHHC
Q ss_conf 078899999999984
Q gi|254780826|r 431 MPLSVTRALLKAIFD 445 (509)
Q Consensus 431 i~l~~Tr~ii~ai~~ 445 (509)
=.=+|||++++|+-.
T Consensus 246 P~HPYT~~Ll~a~P~ 260 (327)
T PRK11308 246 PRHPYTQALLSATPR 260 (327)
T ss_pred CCCHHHHHHHHCCCC
T ss_conf 999899999954898
No 336
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=72.54 E-value=1.8 Score=23.18 Aligned_cols=21 Identities=43% Similarity=0.608 Sum_probs=16.6
Q ss_pred CCCEEEEEEECCCCCCCCCCC
Q ss_conf 787027998335431112224
Q gi|254780826|r 216 EKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 216 ~~~d~alfFGLSGTGKTTLS~ 236 (509)
.++--.++.|++|+|||||-.
T Consensus 12 ~~~~KililG~~~sGKTsll~ 32 (173)
T cd04154 12 EREMRILILGLDNAGKTTILK 32 (173)
T ss_pred CCCEEEEEECCCCCCHHHHHH
T ss_conf 573189999899978899999
No 337
>COG3451 VirB4 Type IV secretory pathway, VirB4 components [Intracellular trafficking and secretion]
Probab=72.49 E-value=1.4 Score=23.94 Aligned_cols=17 Identities=41% Similarity=0.645 Sum_probs=12.3
Q ss_pred EEEEEECCCCCCCCCCC
Q ss_conf 27998335431112224
Q gi|254780826|r 220 VALFFGLSGTGKTTLSA 236 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS~ 236 (509)
-++.+|.||.|||||-.
T Consensus 438 hT~I~G~tGaGKTvLl~ 454 (796)
T COG3451 438 HTLIIGPTGAGKTVLLS 454 (796)
T ss_pred CEEEECCCCCCHHHHHH
T ss_conf 74998898887899999
No 338
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=72.44 E-value=1.8 Score=23.08 Aligned_cols=22 Identities=50% Similarity=0.675 Sum_probs=17.4
Q ss_pred CCCEEEEEEECCCCCCCCCCCC
Q ss_conf 7870279983354311122247
Q gi|254780826|r 216 EKEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 216 ~~~d~alfFGLSGTGKTTLS~d 237 (509)
.++-..++.||.|+||||+-..
T Consensus 17 ~k~~kIlilGld~aGKTTil~~ 38 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHM 38 (190)
T ss_pred CCCCEEEEEECCCCCHHHHHHH
T ss_conf 7704899990699988999999
No 339
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein; InterPro: IPR005285 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes transporters, whose physiological function is not yet established. These proteins are thought to confer resistance to the chemicals cycloheximide and sulphomethuron methyl, BFA, azole antifungal agents, other antifungal agents: amorolfine and terbinafine. Some of them could serve as an efflux pump of various antibiotics..
Probab=72.35 E-value=1.4 Score=23.93 Aligned_cols=236 Identities=19% Similarity=0.242 Sum_probs=117.8
Q ss_pred CEEEEEEECCCCCCCCCCC-CCCCEEEECCCEEECCCCCCCCC--CCCCCCCCCCCC----------CCCHHHHHHHHHC
Q ss_conf 7027998335431112224-78861330311021567412345--553211013583----------3351358875301
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSA-SVDRFLIGDDEHGWSKEGVFNFE--GGCYAKSINLSK----------ETEPEIFSASCRF 284 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~-d~~r~LigDDehgW~d~gvfn~E--gGcYaK~i~Ls~----------~~EP~I~~aa~~~ 284 (509)
+..+.+.|-||-|||||=- =.+|.=.| .+=+++=+.|.. +..+...|++=+ -.|--.|+|..|-
T Consensus 853 G~lTALMG~SGAGKTTLLn~La~R~t~G---vIT~G~~lVNG~~lD~sF~R~iGYvQQQD~Hl~~~TVREaL~FSA~LRq 929 (1466)
T TIGR00956 853 GTLTALMGASGAGKTTLLNVLAERVTTG---VITDGDRLVNGRPLDSSFQRSIGYVQQQDLHLETSTVREALRFSAYLRQ 929 (1466)
T ss_pred CEEEECCCCCCCCHHHHHHHHHCCCCCC---EEECCEEEECCCCCCCCCCCCCCCEEECCEECCCCHHHHHHHHHHHHCC
T ss_conf 8576515788763578886443304321---7705715508845575557441324542212242028899999998459
Q ss_pred CH-H--------HCCCEECCCCCEECCCCCCCCCEE---EEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHCC
Q ss_conf 10-3--------124005789811114788676705---89860004310002567887269996026778876044418
Q gi|254780826|r 285 GT-V--------LENVVVDECGIPNFKDSSVTENTR---AAYPLNFIHNHAPQSIGKHPKHVIMLAADAFGVLPPVAYLN 352 (509)
Q Consensus 285 ~a-i--------lENV~~d~~~~~df~d~s~TeNtR---~~yp~~~i~n~~~~~~~~~p~~iifl~~d~~gvlPpvsklt 352 (509)
-. | .|.| ++==..-.|.|--+-.-|- -+=-|=.+-++| .....|+.+||| | =|=|=|+
T Consensus 930 P~~vs~~EK~~YVe~v-I~lLEMe~YaDAvVG~pG~tGLNVEQRKRLTIGV--ELvAkPkLL~FL--D-----EPTSGLD 999 (1466)
T TIGR00956 930 PKSVSKSEKMEYVEEV-IKLLEMESYADAVVGVPGETGLNVEQRKRLTIGV--ELVAKPKLLLFL--D-----EPTSGLD 999 (1466)
T ss_pred CCCCCHHHHHHHHHHH-HHHHCCHHHCCEEEECCCCCCCCHHHHHHHHHHH--HHHHCCCHHEEC--C-----CCCCCHH
T ss_conf 8567865324688888-7664101022113515677888732321010334--322163200021--5-----8897055
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHCCCCCCCCHHHHHHHHHH-----HHHHHCCEEEEEECCCCCCCCCC
Q ss_conf 5889999974232456662000125653121001050015683153899999-----99881980999816746887688
Q gi|254780826|r 353 PEKAVYYFLSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNILKD-----YIVKYCVDCWLVNTGWTAGSYGE 427 (509)
Q Consensus 353 ~~qa~~~F~sGyT~k~agte~g~~ep~~tfs~cFg~PF~~~~p~~ya~ll~~-----~i~~~~~~vyLvNTGw~Gg~~g~ 427 (509)
.--|.. +.=.--|+|-+ -||..+|=- +|- |-||.| .|++.|-.||-=.=
T Consensus 1000 SQtAWs--i~~l~RKLad~------GQaILCTIH-QPS--------A~L~~eFDrLLlLqkGG~TvYFGdl--------- 1053 (1466)
T TIGR00956 1000 SQTAWS--ICKLLRKLADH------GQAILCTIH-QPS--------AILFEEFDRLLLLQKGGQTVYFGDL--------- 1053 (1466)
T ss_pred HHHHHH--HHHHHHHHHHC------CCEEEECCC-CHH--------HHHHHHHHHHHHHHCCCEEEEECCC---------
T ss_conf 899999--99999988755------983886043-024--------8999986289775428806872751---------
Q ss_pred CCCCCHHHHHHHHHHHH-CCCCCCCCEEECCC-CCCCCCCCCCCCCHHHCCHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 73207889999999998-49602466066788-7742562079899656497662599899999999999999
Q gi|254780826|r 428 GYRMPLSVTRALLKAIF-DNSIKSVPYRVDEN-FGFSVPLEVKGVDRKLLNPRDSWNDVEAYDQKMRELLLMF 498 (509)
Q Consensus 428 G~Ri~l~~Tr~ii~ai~-~g~l~~~~~~~~~~-f~l~iP~~~~gv~~~~l~P~~~w~d~~~Y~~~a~~L~~~F 498 (509)
| +....||+--- +.--.+++-...|= +=|+|--..||--. --|=.+.|.+.++|++.-.+|-.|=
T Consensus 1054 G-----~n~~T~inYFEa~hGA~kCp~~~NPAEwmLeViGAApga~~-~~Dy~E~W~nS~ey~~~~~el~~l~ 1120 (1466)
T TIGR00956 1054 G-----ENSKTLINYFEAKHGAPKCPEDANPAEWMLEVIGAAPGAKA-NQDYHEVWRNSSEYQAVKEELDRLE 1120 (1466)
T ss_pred C-----HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCC-CCHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 3-----13589998886653788985887634558777446877763-3006756258388999999999997
No 340
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=72.24 E-value=1.4 Score=23.79 Aligned_cols=18 Identities=33% Similarity=0.497 Sum_probs=15.1
Q ss_pred EEEEEECCCCCCCCCCCC
Q ss_conf 279983354311122247
Q gi|254780826|r 220 VALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS~d 237 (509)
-.++.|++|+|||||-..
T Consensus 5 kIvilG~~~~GKTsil~r 22 (183)
T cd04152 5 HIVMLGLDSAGKTTVLYR 22 (183)
T ss_pred EEEEECCCCCCHHHHHHH
T ss_conf 999999999988999999
No 341
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=72.20 E-value=1.7 Score=23.34 Aligned_cols=20 Identities=35% Similarity=0.494 Sum_probs=16.4
Q ss_pred CCEEEEEEECCCCCCCCCCC
Q ss_conf 87027998335431112224
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~ 236 (509)
.+......|-||+|||||.-
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~K 517 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLK 517 (709)
T ss_pred CCCEEEEECCCCCCHHHHHH
T ss_conf 99889998799998899999
No 342
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=72.06 E-value=1.7 Score=23.28 Aligned_cols=17 Identities=35% Similarity=0.638 Sum_probs=13.9
Q ss_pred EEEEEECCCCCCCCCCC
Q ss_conf 27998335431112224
Q gi|254780826|r 220 VALFFGLSGTGKTTLSA 236 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS~ 236 (509)
-++.+|.+|+|||||-+
T Consensus 490 HTlIiGpTGaGKTvll~ 506 (852)
T PRK13891 490 HTFMFGPTGAGKSTHLG 506 (852)
T ss_pred CEEEECCCCCCHHHHHH
T ss_conf 40787899998899999
No 343
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=71.83 E-value=2 Score=22.86 Aligned_cols=52 Identities=17% Similarity=0.255 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 3899999998819809998167468876887320788999999999849602466066
Q gi|254780826|r 398 YGNILKDYIVKYCVDCWLVNTGWTAGSYGEGYRMPLSVTRALLKAIFDNSIKSVPYRV 455 (509)
Q Consensus 398 ya~ll~~~i~~~~~~vyLvNTGw~Gg~~g~G~Ri~l~~Tr~ii~ai~~g~l~~~~~~~ 455 (509)
|+.+| ..+.+++..+.-+-+| =-|=..|.....+.+|+-++...-..++|..
T Consensus 327 ~G~il-n~~~~~~lPlsy~T~G-----Q~VPeDi~~A~~~~Lv~ra~~~~~~~~~~~~ 378 (404)
T PRK06995 327 LGGAL-DTVIRHKLPLHYVSNG-----QRVPEDLHVANAKFLLHRAFCAPREGSPFVP 378 (404)
T ss_pred HHHHH-HHHHHHCCCEEEECCC-----CCCCCCHHCCCHHHHHHHHHHCCCCCCCCCC
T ss_conf 23999-9999978985998189-----9584212108989999998626455899998
No 344
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=71.79 E-value=1.3 Score=23.98 Aligned_cols=17 Identities=41% Similarity=0.522 Sum_probs=13.6
Q ss_pred EEEEECCCCCCCCCCCC
Q ss_conf 79983354311122247
Q gi|254780826|r 221 ALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 221 alfFGLSGTGKTTLS~d 237 (509)
...-|-||+||||++..
T Consensus 2 IgIaG~SgSGKTT~a~~ 18 (179)
T cd02028 2 VGIAGPSGSGKTTFAKK 18 (179)
T ss_pred EEEECCCCCCHHHHHHH
T ss_conf 89989897789999999
No 345
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=71.59 E-value=0.09 Score=31.75 Aligned_cols=126 Identities=17% Similarity=0.273 Sum_probs=54.1
Q ss_pred EEEEEEECCCCCCCCCCCC------CCCEEEECCCEEECCC---CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHC
Q ss_conf 0279983354311122247------8861330311021567---412345553211013583335135887530110312
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS------VDRFLIGDDEHGWSKE---GVFNFEGGCYAKSINLSKETEPEIFSASCRFGTVLE 289 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d------~~r~LigDDehgW~d~---gvfn~EgGcYaK~i~Ls~~~EP~I~~aa~~~~ailE 289 (509)
..-||-|..||||||..-= +.. .+.++.+.-.-+ ..-.+..|...-.+-+++.+..-+=+ +| .++|
T Consensus 44 ~aylf~G~rG~GKTt~Ari~ak~lnc~~-~~~~~~~~~~c~~c~~c~~i~~~~~~dv~EiDaas~~gv~~--ir--~l~~ 118 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARIIAKAVNCSA-LITENTTIKTCEKCTNCISFNNHNHPDIIEIDAASKTSVDD--IR--RIIE 118 (507)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCHHH--HH--HHHH
T ss_conf 3477458799788999999999967999-88889988888887678998658999859963788888899--99--9986
Q ss_pred CCEECCCCCEECCCCCCCCCEEEEEECCCCC-------CCCCCCCCCCCCEEEEE--ECCCCCCCCHH---------HHC
Q ss_conf 4005789811114788676705898600043-------10002567887269996--02677887604---------441
Q gi|254780826|r 290 NVVVDECGIPNFKDSSVTENTRAAYPLNFIH-------NHAPQSIGKHPKHVIML--AADAFGVLPPV---------AYL 351 (509)
Q Consensus 290 NV~~d~~~~~df~d~s~TeNtR~~yp~~~i~-------n~~~~~~~~~p~~iifl--~~d~~gvlPpv---------skl 351 (509)
+|.+-+.. .-.=+|-++-+. |+........|.+++|+ |++..-++++| .++
T Consensus 119 ~~~~~p~~-----------~~~kv~iidE~hmls~~a~nallktlEepp~~~~Fi~atte~~kip~ti~srcq~f~~~~i 187 (507)
T PRK06645 119 SAEYKPLQ-----------GKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQRYDLRRL 187 (507)
T ss_pred HCCCCCCC-----------CCEEEEEECCHHHCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHCCHHHHHHCEEEEEECC
T ss_conf 35517876-----------7435899521422489999999997427864438999748536483788854327875459
Q ss_pred CHHHHHHHH
Q ss_conf 858899999
Q gi|254780826|r 352 NPEKAVYYF 360 (509)
Q Consensus 352 t~~qa~~~F 360 (509)
+.++-+.|.
T Consensus 188 ~~~~i~~~l 196 (507)
T PRK06645 188 SFEEIFKLL 196 (507)
T ss_pred CHHHHHHHH
T ss_conf 979999999
No 346
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=71.56 E-value=3 Score=21.62 Aligned_cols=27 Identities=37% Similarity=0.540 Sum_probs=19.0
Q ss_pred CCCCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 453477787027998335431112224
Q gi|254780826|r 210 SINMDKEKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 210 san~~~~~~d~alfFGLSGTGKTTLS~ 236 (509)
+.|..-..+++..+.|.+|.|||||--
T Consensus 39 ~vsf~i~~Gei~gLlGpNGaGKSTllk 65 (236)
T cd03267 39 GISFTIEKGEIVGFIGPNGAGKTTTLK 65 (236)
T ss_pred CCEEEECCCCEEEEECCCCCHHHHHHH
T ss_conf 805788489599999999830999999
No 347
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=71.55 E-value=1.8 Score=23.15 Aligned_cols=69 Identities=14% Similarity=0.171 Sum_probs=39.6
Q ss_pred CCCCCCCEEEHHHCCCCCCCCHHHHHHHHH---HHHHHHCCE-----------------EEEEECCCCCC---CCCCCCC
Q ss_conf 012565312100105001568315389999---999881980-----------------99981674688---7688732
Q gi|254780826|r 374 GVLKPEATFSACFGAPFMPRDPVQYGNILK---DYIVKYCVD-----------------CWLVNTGWTAG---SYGEGYR 430 (509)
Q Consensus 374 g~~ep~~tfs~cFg~PF~~~~p~~ya~ll~---~~i~~~~~~-----------------vyLvNTGw~Gg---~~g~G~R 430 (509)
-+.+|+-.+-- +|.--+.++.-++++. +.-++++.. +.++.-|.+=. ...+=+.
T Consensus 176 L~~~P~lLI~D---EPTsaLDv~~q~~Il~ll~~l~~e~g~til~ITHDl~~v~~~~DrI~VMy~G~iVE~G~~~~i~~~ 252 (330)
T PRK09473 176 LLCRPKLLIAD---EPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDVFYQ 252 (330)
T ss_pred HHCCCCEEEEC---CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 97099999973---875547999999999999999997499479982889999986998999989889997889999737
Q ss_pred CCHHHHHHHHHHHHC
Q ss_conf 078899999999984
Q gi|254780826|r 431 MPLSVTRALLKAIFD 445 (509)
Q Consensus 431 i~l~~Tr~ii~ai~~ 445 (509)
=.=+|||++++|+-+
T Consensus 253 P~HPYT~~Ll~a~P~ 267 (330)
T PRK09473 253 PSHPYSIGLLNAVPR 267 (330)
T ss_pred CCCHHHHHHHHCCCC
T ss_conf 999899999954899
No 348
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=71.54 E-value=1.9 Score=23.03 Aligned_cols=21 Identities=48% Similarity=0.642 Sum_probs=17.4
Q ss_pred CCEEEEEEECCCCCCCCCCCC
Q ss_conf 870279983354311122247
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~d 237 (509)
++-..+++||.+.||||+-..
T Consensus 16 ke~~ililGLd~aGKTTil~~ 36 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHM 36 (184)
T ss_pred CCCEEEEECCCCCCHHHHHHH
T ss_conf 614799996588988999999
No 349
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=71.43 E-value=2.5 Score=22.15 Aligned_cols=20 Identities=40% Similarity=0.605 Sum_probs=16.1
Q ss_pred CCEEEEEEECCCCCCCCCCC
Q ss_conf 87027998335431112224
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~ 236 (509)
+..+.+|.|+.|.||||--|
T Consensus 173 k~~vi~lVGPTGvGKTTTiA 192 (388)
T PRK12723 173 KKRIFILVGPTGVGKTTTIA 192 (388)
T ss_pred CCEEEEEECCCCCCHHHHHH
T ss_conf 76289998998875787999
No 350
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=71.27 E-value=1.4 Score=23.84 Aligned_cols=19 Identities=37% Similarity=0.399 Sum_probs=16.0
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
--.+++|++|.|||||...
T Consensus 6 ~kivv~G~~g~GKTtl~~~ 24 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNR 24 (219)
T ss_pred EEEEEECCCCCCHHHHHHH
T ss_conf 7999999999988999999
No 351
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=71.18 E-value=2.4 Score=22.27 Aligned_cols=62 Identities=27% Similarity=0.373 Sum_probs=37.7
Q ss_pred EECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHC
Q ss_conf 312453477787027998335431112224788613303110215674123455532110135833351358875301
Q gi|254780826|r 207 MHCSINMDKEKEDVALFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSASCRF 284 (509)
Q Consensus 207 mHcsan~~~~~~d~alfFGLSGTGKTTLS~d~~r~LigDDehgW~d~gvfn~EgGcYaK~i~Ls~~~EP~I~~aa~~~ 284 (509)
-|.|..+.. | +..+.-|.||.||+||-.---- | .-.+.|..-|||--| |. .-|+.|+.-..+
T Consensus 20 ~~isl~v~~-G-e~iaitGPSG~GKStllk~va~-L------isp~~G~l~f~Ge~v------s~-~~pea~Rq~VsY 81 (223)
T COG4619 20 NNISLSVRA-G-EFIAITGPSGCGKSTLLKIVAS-L------ISPTSGTLLFEGEDV------ST-LKPEAYRQQVSY 81 (223)
T ss_pred CCEEEEECC-C-CEEEEECCCCCCHHHHHHHHHH-C------CCCCCCEEEECCCCC------CC-CCHHHHHHHHHH
T ss_conf 241366538-8-5488767887668899999981-3------699885288747334------43-485999999999
No 352
>PRK13542 consensus
Probab=71.12 E-value=1.8 Score=23.16 Aligned_cols=57 Identities=9% Similarity=0.042 Sum_probs=31.3
Q ss_pred HHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHCCCCCCCCHHHHHHHHHHHHHHH---CCEEEEE
Q ss_conf 044418588999997423245666200012565312100105001568315389999999881---9809998
Q gi|254780826|r 347 PVAYLNPEKAVYYFLSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNILKDYIVKY---CVDCWLV 416 (509)
Q Consensus 347 pvsklt~~qa~~~F~sGyT~k~agte~g~~ep~~tfs~cFg~PF~~~~p~~ya~ll~~~i~~~---~~~vyLv 416 (509)
++..||..|-.---+.-- =+.+|.-.+ +=+||--+.+.-. +.+.+.|+++ +..+-++
T Consensus 144 ~~~~LSgGqrqRv~lA~a---------l~~~p~ill---LDEPtagLD~~~~-~~l~~~i~~~~~~g~tvIi~ 203 (224)
T PRK13542 144 PARTLSQGQRRRVALARL---------ALTPRALWL---LDEPLTSLDDASA-ACFHTLLDEHLRRGGMAVVA 203 (224)
T ss_pred CHHHCCHHHHHHHHHHHH---------HHCCCCEEE---ECCCCCCCCHHHH-HHHHHHHHHHHHCCCEEEEE
T ss_conf 812499999999999999---------807998899---7385354899999-99999999999689989999
No 353
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=71.03 E-value=1.9 Score=22.98 Aligned_cols=57 Identities=14% Similarity=0.098 Sum_probs=30.7
Q ss_pred HHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHCCCCCCCCHHHHHHH---HHHHHHHHCCEEEEEE
Q ss_conf 44185889999974232456662000125653121001050015683153899---9999988198099981
Q gi|254780826|r 349 AYLNPEKAVYYFLSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNI---LKDYIVKYCVDCWLVN 417 (509)
Q Consensus 349 sklt~~qa~~~F~sGyT~k~agte~g~~ep~~tfs~cFg~PF~~~~p~~ya~l---l~~~i~~~~~~vyLvN 417 (509)
..||..|-..-.+.- .=+.+|+-.+- -+|+--+.|....++ +.+.-++.+..+-++-
T Consensus 129 ~~LSGG~kQrv~iAr---------aL~~~P~illl---DEPt~gLD~~~~~~i~~li~~l~~~~g~tii~vt 188 (213)
T cd03259 129 HELSGGQQQRVALAR---------ALAREPSLLLL---DEPLSALDAKLREELREELKELQRELGITTIYVT 188 (213)
T ss_pred CCCCHHHHHHHHHHH---------HHCCCCCEEEE---CCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 338989999999987---------62279999998---3986437999999999999999996299999996
No 354
>TIGR02881 spore_V_K stage V sporulation protein K; InterPro: IPR014232 Proteins in this entry include the stage V sporulation protein K (SpoVK), a close homologue of the Rubisco expression protein CbbX (IPR000470 from INTERPRO), and are members of an ATPase family associated with various cellular activities. These proteins are strictly limited to bacterial endospore-forming species, but are not found universally among members of this group; they are missing from the Clostridium species..
Probab=71.02 E-value=1.6 Score=23.45 Aligned_cols=163 Identities=23% Similarity=0.290 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHCC-C-CCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEECC---CEEECCCCCCCCC
Q ss_conf 8877899999986241-0-787993124534777870279983354311122247886133031---1021567412345
Q gi|254780826|r 185 GEIKKSVFTYLNHIFP-E-RGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSASVDRFLIGDD---EHGWSKEGVFNFE 259 (509)
Q Consensus 185 GEiKKsiFtvmny~lp-~-~g~lpmHcsan~~~~~~d~alfFGLSGTGKTTLS~d~~r~LigDD---ehgW~d~gvfn~E 259 (509)
.|+|..|.=+--|+.= + +--- +.+..+. -=-++|=|--||||||-.= +||-= --+.+++-+.=.|
T Consensus 12 ~~vK~~i~EiYA~i~i~~kR~~~----GLk~~~~-~LHMiFKGNPGTGKTTVAR-----~~gklf~emnvL~KGH~iE~E 81 (261)
T TIGR02881 12 DEVKELIKEIYAWIQINEKRKEE----GLKTSKQ-VLHMIFKGNPGTGKTTVAR-----LLGKLFKEMNVLSKGHLIEVE 81 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHCCCCC-EEEEEEECCCCCCHHHHHH-----HHHHHHHHCCCCCCCCEEEEE
T ss_conf 89999999999999998888751----0114884-4787742786684389999-----999998533756788678876
Q ss_pred C----CCCCCCCCCCCCCCHHHHHHHHHCCHHHCCCEE--CCCCCEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCE
Q ss_conf 5----532110135833351358875301103124005--7898111147886767058986000431000256788726
Q gi|254780826|r 260 G----GCYAKSINLSKETEPEIFSASCRFGTVLENVVV--DECGIPNFKDSSVTENTRAAYPLNFIHNHAPQSIGKHPKH 333 (509)
Q Consensus 260 g----GcYaK~i~Ls~~~EP~I~~aa~~~~ailENV~~--d~~~~~df~d~s~TeNtR~~yp~~~i~n~~~~~~~~~p~~ 333 (509)
- |=| |+=++..--++-.-| .-|.++=.=++ --.|.-||. .+.|+.-|. .+-.+-..
T Consensus 82 RADLVGEY---IGHTAqkTRe~~kkA-~GGvLFiDEAYSLaRGGEKDFG-------------KEAIDtLVK-~mEd~~~~ 143 (261)
T TIGR02881 82 RADLVGEY---IGHTAQKTREVIKKA-LGGVLFIDEAYSLARGGEKDFG-------------KEAIDTLVK-AMEDQRNE 143 (261)
T ss_pred ECCCCCCC---CCCHHHHHHHHHHHH-CCCCHHHHHHHHHHCCCCCCCC-------------CHHHHHHHH-HHHHCCCC
T ss_conf 22212232---030048999999986-3880055777776148888766-------------208889999-87615698
Q ss_pred EEEEECCCCCCCCHHHHCCHHHHHHHHHH---HCCCCCCCCCCCCCCCCCEEEHHHCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99960267788760444185889999974---232456662000125653121001050015683153899999998
Q gi|254780826|r 334 VIMLAADAFGVLPPVAYLNPEKAVYYFLS---GYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNILKDYIV 407 (509)
Q Consensus 334 iifl~~d~~gvlPpvsklt~~qa~~~F~s---GyT~k~agte~g~~ep~~tfs~cFg~PF~~~~p~~ya~ll~~~i~ 407 (509)
.|++.+= -..=|-|||+ |.-|+ | |+-.--|.--.+-|.+..+
T Consensus 144 lvlILAG------------Y~~EM~yFL~~NPGL~SR------------------F--Pi~i~FPdY~~eeL~~Ia~ 188 (261)
T TIGR02881 144 LVLILAG------------YSDEMDYFLSLNPGLRSR------------------F--PISIDFPDYTVEELMEIAE 188 (261)
T ss_pred EEEEEEC------------CHHHHHHHHHCCCCCCCC------------------C--CCEEECCCCCHHHHHHHHH
T ss_conf 6899708------------768999986207797776------------------6--5054188998889999999
No 355
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=70.93 E-value=1.8 Score=23.05 Aligned_cols=67 Identities=18% Similarity=0.218 Sum_probs=39.6
Q ss_pred CCCCCCEEEHHHCCCCCCCCHHHHHHHHH---HHHHHHCCE-----------------EEEEECCCCCCCCCCCC----C
Q ss_conf 12565312100105001568315389999---999881980-----------------99981674688768873----2
Q gi|254780826|r 375 VLKPEATFSACFGAPFMPRDPVQYGNILK---DYIVKYCVD-----------------CWLVNTGWTAGSYGEGY----R 430 (509)
Q Consensus 375 ~~ep~~tfs~cFg~PF~~~~p~~ya~ll~---~~i~~~~~~-----------------vyLvNTGw~Gg~~g~G~----R 430 (509)
+.+|.-..-- +|.-.+.++.-+++|. +.-++.+.. +.++.-|.+=. .|.-+ +
T Consensus 169 ~~~P~lLIaD---EPTsaLD~~~q~~Il~ll~~l~~~~g~til~ITHDl~~v~~~aDri~VMy~G~iVE-~G~~~~i~~~ 244 (327)
T PRK11022 169 ACRPKLLIAD---EPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVE-TGDAHEIFRA 244 (327)
T ss_pred HHCCCEEEEC---CCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHCCEEEEEECCEEEE-ECCHHHHHHC
T ss_conf 7099999983---88765799999999999999999719948999288999998699899998988999-7779999707
Q ss_pred CCHHHHHHHHHHHHC
Q ss_conf 078899999999984
Q gi|254780826|r 431 MPLSVTRALLKAIFD 445 (509)
Q Consensus 431 i~l~~Tr~ii~ai~~ 445 (509)
=.=+|||++++|+-+
T Consensus 245 P~HPYT~~Ll~a~P~ 259 (327)
T PRK11022 245 PRHPYTQALLRALPE 259 (327)
T ss_pred CCCHHHHHHHHCCCC
T ss_conf 999899999962898
No 356
>PRK07574 formate dehydrogenase; Provisional
Probab=70.89 E-value=8.2 Score=18.75 Aligned_cols=88 Identities=18% Similarity=0.190 Sum_probs=57.6
Q ss_pred CCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEECCCCCCCC-CCC--C
Q ss_conf 1568315389999999881980999816746887688732078899999999984960246606678877425-620--7
Q gi|254780826|r 391 MPRDPVQYGNILKDYIVKYCVDCWLVNTGWTAGSYGEGYRMPLSVTRALLKAIFDNSIKSVPYRVDENFGFSV-PLE--V 467 (509)
Q Consensus 391 ~~~~p~~ya~ll~~~i~~~~~~vyLvNTGw~Gg~~g~G~Ri~l~~Tr~ii~ai~~g~l~~~~~~~~~~f~l~i-P~~--~ 467 (509)
+|++|..+.-+=.+.|++-+-.+|||||+ |=.|=...++++|..+|.|... -.+.|--+- |.. .
T Consensus 256 ~PLt~eT~~Lin~~~l~~MK~ga~LVNtA----------RG~iVDe~AL~~AL~sG~i~ga---glDV~~~EP~p~dhPl 322 (385)
T PRK07574 256 CPLHPETEHLFDKDVLSRMKRGSYLVNTA----------RGKIVDRDAVVEALESGHLAGY---AGDVWFPQPAPADHPW 322 (385)
T ss_pred CCCCHHHHHHCCHHHHHCCCCCCEEEECC----------CCHHCCHHHHHHHHHCCCCEEE---EECCCCCCCCCCCCCH
T ss_conf 67985774010299994389981899888----------6110199999999972980499---9678998899899802
Q ss_pred CCCCHHHCCHHHHCCCHHHHHHHH
Q ss_conf 989965649766259989999999
Q gi|254780826|r 468 KGVDRKLLNPRDSWNDVEAYDQKM 491 (509)
Q Consensus 468 ~gv~~~~l~P~~~w~d~~~Y~~~a 491 (509)
-..|.-++.|.-+..-.++-...+
T Consensus 323 ~~lpNv~lTPHiaG~t~~Aq~R~a 346 (385)
T PRK07574 323 RTMPRNAMTPHISGTTLSAQARYA 346 (385)
T ss_pred HCCCCCEECCCCCCCCHHHHHHHH
T ss_conf 229961688854548699999999
No 357
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=70.77 E-value=2 Score=22.85 Aligned_cols=19 Identities=32% Similarity=0.454 Sum_probs=16.3
Q ss_pred CEEEEEEECCCCCCCCCCC
Q ss_conf 7027998335431112224
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~ 236 (509)
+.+..+.|..|.|||||--
T Consensus 26 Gei~gllG~NGaGKTTll~ 44 (210)
T cd03269 26 GEIFGLLGPNGAGKTTTIR 44 (210)
T ss_pred CCEEEEECCCCCCHHHHHH
T ss_conf 9599999899984999999
No 358
>KOG0743 consensus
Probab=70.69 E-value=1.3 Score=23.95 Aligned_cols=19 Identities=37% Similarity=0.625 Sum_probs=16.1
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
-.-|+||+.|||||++-|.
T Consensus 236 RGYLLYGPPGTGKSS~IaA 254 (457)
T KOG0743 236 RGYLLYGPPGTGKSSFIAA 254 (457)
T ss_pred CCCEEECCCCCCHHHHHHH
T ss_conf 0412047999988899999
No 359
>pfam00485 PRK Phosphoribulokinase / Uridine kinase family. In Arabidopsis the region carries two binding domains, a phosphoribosylpyrophosphate-binding domain and, at the very C-terminus, a uracil-binding domain.
Probab=70.59 E-value=1.5 Score=23.73 Aligned_cols=17 Identities=41% Similarity=0.493 Sum_probs=13.7
Q ss_pred EEEEECCCCCCCCCCCC
Q ss_conf 79983354311122247
Q gi|254780826|r 221 ALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 221 alfFGLSGTGKTTLS~d 237 (509)
...-|-||+||||++.-
T Consensus 2 IgIaG~SgSGKTT~a~~ 18 (196)
T pfam00485 2 IGVAGSSGAGKTTVART 18 (196)
T ss_pred EEEECCCCCCHHHHHHH
T ss_conf 89989985719999999
No 360
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=70.39 E-value=2 Score=22.77 Aligned_cols=58 Identities=12% Similarity=0.108 Sum_probs=30.0
Q ss_pred HHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHCCCCCCCCHHHHHHHHH--HHHHHHCCEEEEE
Q ss_conf 044418588999997423245666200012565312100105001568315389999--9998819809998
Q gi|254780826|r 347 PVAYLNPEKAVYYFLSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNILK--DYIVKYCVDCWLV 416 (509)
Q Consensus 347 pvsklt~~qa~~~F~sGyT~k~agte~g~~ep~~tfs~cFg~PF~~~~p~~ya~ll~--~~i~~~~~~vyLv 416 (509)
++..||-.|-..-.+.-- =+.+|.-.+- -+|.--+.|..-.+++. +.+++.+..+-++
T Consensus 140 ~~~~LSGG~~Qrv~iAra---------l~~~P~lliL---DEPT~gLD~~~~~~i~~~l~~l~~~G~tii~v 199 (236)
T cd03219 140 PAGELSYGQQRRLEIARA---------LATDPKLLLL---DEPAAGLNPEETEELAELIRELRERGITVLLV 199 (236)
T ss_pred CHHHCCHHHHHHHHHHHH---------HHCCCCEEEE---ECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 626699999999999999---------9659999999---48765899999999999999999659999999
No 361
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=70.35 E-value=2 Score=22.79 Aligned_cols=18 Identities=39% Similarity=0.582 Sum_probs=15.9
Q ss_pred CEEEEEEECCCCCCCCCC
Q ss_conf 702799833543111222
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLS 235 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS 235 (509)
+.+..+.|.+|.|||||-
T Consensus 31 Gei~gllG~NGAGKTTll 48 (293)
T COG1131 31 GEIFGLLGPNGAGKTTLL 48 (293)
T ss_pred CEEEEEECCCCCCHHHHH
T ss_conf 959999899999899999
No 362
>pfam07724 AAA_2 AAA domain (Cdc48 subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=70.22 E-value=1.7 Score=23.35 Aligned_cols=18 Identities=44% Similarity=0.743 Sum_probs=15.5
Q ss_pred EEEEEECCCCCCCCCCCC
Q ss_conf 279983354311122247
Q gi|254780826|r 220 VALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS~d 237 (509)
+.+|.|.||+|||.|.-.
T Consensus 5 ~~l~~GPsGvGKT~lAk~ 22 (168)
T pfam07724 5 SFLFLGPTGVGKTELAKA 22 (168)
T ss_pred EEEEECCCCCCHHHHHHH
T ss_conf 999889899899999999
No 363
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=70.13 E-value=2 Score=22.77 Aligned_cols=86 Identities=16% Similarity=0.111 Sum_probs=43.1
Q ss_pred HHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHCCCCCCCCHHHHHHHHHH--HHHHHCCE------------
Q ss_conf 0444185889999974232456662000125653121001050015683153899999--99881980------------
Q gi|254780826|r 347 PVAYLNPEKAVYYFLSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNILKD--YIVKYCVD------------ 412 (509)
Q Consensus 347 pvsklt~~qa~~~F~sGyT~k~agte~g~~ep~~tfs~cFg~PF~~~~p~~ya~ll~~--~i~~~~~~------------ 412 (509)
|+..||..|..---+.-. -..+|.-.+.- +|+--+.+...++++.- ++.+.|..
T Consensus 402 ~~~~LSGGq~QRv~iAra---------L~~~P~iLilD---EPT~GLD~~~~~~i~~ll~~l~~~G~tvl~iSHDl~~v~ 469 (513)
T PRK13549 402 AIARLSGGNQQKAILAKC---------LLLNPRILILD---EPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVL 469 (513)
T ss_pred CCCCCCHHHHHHHHHHHH---------HHCCCCEEEEE---CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHH
T ss_conf 502399999999999999---------97199899997---986689999999999999999957999999918689999
Q ss_pred -----EEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf -----999816746887688732078899999999984960
Q gi|254780826|r 413 -----CWLVNTGWTAGSYGEGYRMPLSVTRALLKAIFDNSI 448 (509)
Q Consensus 413 -----vyLvNTGw~Gg~~g~G~Ri~l~~Tr~ii~ai~~g~l 448 (509)
|.+++-|-+-+. +.++-++-+ .++.+++.+..
T Consensus 470 ~~aDRV~Vm~~G~I~~~-~~~~~~~~e---~~~~~~~~~~~ 506 (513)
T PRK13549 470 GLSDRVLVMHEGKLKGD-LINHNLTQE---QVMEAALRSEH 506 (513)
T ss_pred HHCCEEEEEECCEEEEE-ECHHHCCHH---HHHHHHHCCCC
T ss_conf 86999999989999988-474758999---99999857985
No 364
>PRK07667 uridine kinase; Provisional
Probab=70.12 E-value=2 Score=22.79 Aligned_cols=19 Identities=42% Similarity=0.385 Sum_probs=16.0
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
-+...=|.||+|||||+..
T Consensus 15 ~iIgIaG~sgSGKTTla~~ 33 (190)
T PRK07667 15 FILGIDGLSRSGKTTFVAN 33 (190)
T ss_pred EEEEEECCCCCCHHHHHHH
T ss_conf 9999779897889999999
No 365
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=70.11 E-value=2.1 Score=22.73 Aligned_cols=25 Identities=32% Similarity=0.557 Sum_probs=19.4
Q ss_pred CCEEEEEEECCCCCCCCCCCCCCCE
Q ss_conf 8702799833543111222478861
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSASVDRF 241 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~d~~r~ 241 (509)
.+...++.|-+|+|||||..-=+..
T Consensus 29 ~Ge~~~i~G~nGsGKSTL~~~l~GL 53 (235)
T COG1122 29 KGERVLLIGPNGSGKSTLLKLLNGL 53 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCC
T ss_conf 8989999889998899999995376
No 366
>TIGR02857 CydD ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD; InterPro: IPR014216 The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain and a C-terminal ATP-binding domain. In Escherichia coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in the export of redox-active thiol compounds such as cysteine and glutathione , . The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this entry are all either found in the gammaproteobacterial context, or the CydABCD context. All members of this entry scoring above the trusted cut off at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature, based on this operon in Bacillus subtilis, assigns cydC to the third gene in the operon, where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologues in this family in accordance with the precedence of publication of the E. coli name, CydD..
Probab=70.09 E-value=2 Score=22.83 Aligned_cols=20 Identities=35% Similarity=0.491 Sum_probs=16.4
Q ss_pred CCEEEEEEECCCCCCCCCCC
Q ss_conf 87027998335431112224
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~ 236 (509)
.+..+..-|-||-|||||-.
T Consensus 377 pG~~vAl~G~SGaGKSTLL~ 396 (570)
T TIGR02857 377 PGERVALVGPSGAGKSTLLN 396 (570)
T ss_pred CCCEEEEEECCCCCHHHHHH
T ss_conf 87048886279997889999
No 367
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=70.05 E-value=2 Score=22.84 Aligned_cols=19 Identities=32% Similarity=0.433 Sum_probs=16.0
Q ss_pred CEEEEEEECCCCCCCCCCC
Q ss_conf 7027998335431112224
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~ 236 (509)
++...+.|.+|+|||||--
T Consensus 338 GeriaIvG~NGsGKSTLlk 356 (638)
T PRK10636 338 GSRIGLLGRNGAGKSTLIK 356 (638)
T ss_pred CCEEEEECCCCCCHHHHHH
T ss_conf 8479997478713889999
No 368
>KOG0989 consensus
Probab=69.77 E-value=0.65 Score=26.04 Aligned_cols=33 Identities=42% Similarity=0.619 Sum_probs=21.8
Q ss_pred EEEEEEECCCCCCCCCCCCCC-----------CEE--EECCCEEEC
Q ss_conf 027998335431112224788-----------613--303110215
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSASVD-----------RFL--IGDDEHGWS 251 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d~~-----------r~L--igDDehgW~ 251 (509)
-..||.|.-|||||+-..--. |.| =.+||-|.+
T Consensus 58 p~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis 103 (346)
T KOG0989 58 PHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS 103 (346)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCC
T ss_conf 6078668999867689999999855742355542431366001431
No 369
>KOG0090 consensus
Probab=69.77 E-value=2.6 Score=22.10 Aligned_cols=20 Identities=40% Similarity=0.674 Sum_probs=17.0
Q ss_pred CEEEEEEECCCCCCCCCCCC
Q ss_conf 70279983354311122247
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d 237 (509)
.+..++-|||++|||+|-..
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~q 57 (238)
T KOG0090 38 QNAVLLVGLSDSGKTSLFTQ 57 (238)
T ss_pred CCCEEEEECCCCCCEEEEEE
T ss_conf 88689993278983355420
No 370
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=69.69 E-value=2.3 Score=22.35 Aligned_cols=44 Identities=25% Similarity=0.393 Sum_probs=32.7
Q ss_pred CCEEEEEEECCCCCCCCCCC------CC---CCEEEECCCEEECCCCCCCCCC
Q ss_conf 87027998335431112224------78---8613303110215674123455
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSA------SV---DRFLIGDDEHGWSKEGVFNFEG 260 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~------d~---~r~LigDDehgW~d~gvfn~Eg 260 (509)
.+++....|.||+||+||-. +| +-.|.|.+-|..++++...+-+
T Consensus 35 ~Ge~vaivG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~ 87 (228)
T COG4181 35 RGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRA 87 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCHHCCCHHHHHHHHC
T ss_conf 78658887788875776999995677899854898475010069788987634
No 371
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=69.68 E-value=2 Score=22.82 Aligned_cols=18 Identities=56% Similarity=0.813 Sum_probs=14.9
Q ss_pred EEEEEEECCCCCCCCCCC
Q ss_conf 027998335431112224
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~ 236 (509)
.+.+|.|+.|.||||--+
T Consensus 2 ~vi~lvGptGvGKTTTia 19 (196)
T pfam00448 2 NVILLVGLQGSGKTTTIA 19 (196)
T ss_pred EEEEEECCCCCCHHHHHH
T ss_conf 699998999998899999
No 372
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=69.67 E-value=2.5 Score=22.22 Aligned_cols=31 Identities=16% Similarity=-0.010 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHCCEEEEEEC--CCCCCCC
Q ss_conf 315389999999881980999816--7468876
Q gi|254780826|r 395 PVQYGNILKDYIVKYCVDCWLVNT--GWTAGSY 425 (509)
Q Consensus 395 p~~ya~ll~~~i~~~~~~vyLvNT--Gw~Gg~~ 425 (509)
-...+..|.....+|++-|-++|- -+.++.+
T Consensus 144 l~~~~~~L~~la~~~~~avv~tNQv~~~i~~~~ 176 (226)
T cd01393 144 LSQALRKLLRLADKFNVAVVFTNQVRAKVDVMF 176 (226)
T ss_pred HHHHHHHHHHHHHHCCCEEEEECEEEECCCCCC
T ss_conf 999999999999984979999681178157878
No 373
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=69.63 E-value=2.1 Score=22.74 Aligned_cols=24 Identities=17% Similarity=0.133 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHCCEEEEEEC
Q ss_conf 315389999999881980999816
Q gi|254780826|r 395 PVQYGNILKDYIVKYCVDCWLVNT 418 (509)
Q Consensus 395 p~~ya~ll~~~i~~~~~~vyLvNT 418 (509)
-...+..|....++|++-|-++|-
T Consensus 145 l~~~~~~L~~lA~~~~~aVvvtNq 168 (235)
T cd01123 145 LAKLLRTLKRLADEFNVAVVITNQ 168 (235)
T ss_pred HHHHHHHHHHHHHHCCCEEEEECE
T ss_conf 999999999999980979999680
No 374
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=69.53 E-value=2 Score=22.79 Aligned_cols=17 Identities=59% Similarity=0.845 Sum_probs=14.5
Q ss_pred EEEEEECCCCCCCCCCC
Q ss_conf 27998335431112224
Q gi|254780826|r 220 VALFFGLSGTGKTTLSA 236 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS~ 236 (509)
|.+|.|+.|.||||--+
T Consensus 2 Vi~lvGptGvGKTTTia 18 (173)
T cd03115 2 VILLVGLQGVGKTTTAA 18 (173)
T ss_pred EEEEECCCCCCHHHHHH
T ss_conf 99998999998899999
No 375
>pfam07728 AAA_5 AAA domain (dynein-related subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=69.44 E-value=1.6 Score=23.49 Aligned_cols=16 Identities=44% Similarity=0.756 Sum_probs=13.7
Q ss_pred EEEEECCCCCCCCCCC
Q ss_conf 7998335431112224
Q gi|254780826|r 221 ALFFGLSGTGKTTLSA 236 (509)
Q Consensus 221 alfFGLSGTGKTTLS~ 236 (509)
.++.|.+|||||+|..
T Consensus 2 vll~Gp~G~GKT~la~ 17 (139)
T pfam07728 2 VLLVGPPGTGKSELAE 17 (139)
T ss_pred EEEECCCCCHHHHHHH
T ss_conf 8999899756999999
No 376
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=69.41 E-value=1.8 Score=23.13 Aligned_cols=16 Identities=50% Similarity=0.787 Sum_probs=14.0
Q ss_pred EEEEECCCCCCCCCCC
Q ss_conf 7998335431112224
Q gi|254780826|r 221 ALFFGLSGTGKTTLSA 236 (509)
Q Consensus 221 alfFGLSGTGKTTLS~ 236 (509)
.++.|++|+|||||-.
T Consensus 2 i~ilG~~~vGKTsll~ 17 (158)
T cd00878 2 ILILGLDGAGKTTILY 17 (158)
T ss_pred EEEECCCCCCHHHHHH
T ss_conf 9999999998899999
No 377
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=69.31 E-value=2.2 Score=22.54 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=16.2
Q ss_pred CEEEEEEECCCCCCCCCCC
Q ss_conf 7027998335431112224
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~ 236 (509)
+.+..+.|.||.|||||.-
T Consensus 274 GEivgl~G~nGsGKsTL~~ 292 (491)
T PRK10982 274 GEILGIAGLVGAKRTDIVE 292 (491)
T ss_pred CCEEEEECCCCCCHHHHHH
T ss_conf 9689977899997889999
No 378
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=69.31 E-value=1.1 Score=24.63 Aligned_cols=18 Identities=39% Similarity=0.564 Sum_probs=9.9
Q ss_pred EEEEEEECCCCCCCCCCC
Q ss_conf 027998335431112224
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~ 236 (509)
.++.+-|.||.||+|+..
T Consensus 412 ~t~AlVG~SGsGKSTii~ 429 (1467)
T PTZ00265 412 KTYAFVGESGCGKSTILK 429 (1467)
T ss_pred CEEEEECCCCCCHHHHHH
T ss_conf 779986688875667999
No 379
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=69.24 E-value=2.2 Score=22.50 Aligned_cols=59 Identities=10% Similarity=-0.029 Sum_probs=31.0
Q ss_pred CHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHCCCCCCCCHHHHHH---HHHHHHHHHCCEEEEEE
Q ss_conf 6044418588999997423245666200012565312100105001568315389---99999988198099981
Q gi|254780826|r 346 PPVAYLNPEKAVYYFLSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGN---ILKDYIVKYCVDCWLVN 417 (509)
Q Consensus 346 Ppvsklt~~qa~~~F~sGyT~k~agte~g~~ep~~tfs~cFg~PF~~~~p~~ya~---ll~~~i~~~~~~vyLvN 417 (509)
-|+.-||..|-.---+.- .-+.+|...+.- +|+--+.+....+ +|.+. .+.|..|-+|-
T Consensus 392 ~~~~~LSGGq~QRvaiAr---------aL~~~p~vLilD---EPT~GLD~~~~~~i~~ll~~l-~~~G~tvl~IT 453 (501)
T PRK11288 392 QLIMNLSGGNQQKAILGR---------WLSEDMKVILLD---EPTRGIDVGAKHEIYNVIYEL-AAQGVAVLVVS 453 (501)
T ss_pred CCHHHCCHHHHHHHHHHH---------HHHHCCCEEEEE---CCCCCCCHHHHHHHHHHHHHH-HHCCCEEEEEE
T ss_conf 750028999999999999---------997099989997---987789999999999999999-96899999990
No 380
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=69.01 E-value=1.7 Score=23.26 Aligned_cols=111 Identities=21% Similarity=0.257 Sum_probs=58.6
Q ss_pred EEEEEEECCCCCCCCCCCCCCCEEEECCCEEECCCCCCCCCC----CCC---CCCCCCCCCCCHHHHHHHHHCCHHHCC-
Q ss_conf 027998335431112224788613303110215674123455----532---110135833351358875301103124-
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEG----GCY---AKSINLSKETEPEIFSASCRFGTVLEN- 290 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d~~r~LigDDehgW~d~gvfn~Eg----GcY---aK~i~Ls~~~EP~I~~aa~~~~ailEN- 290 (509)
.+.+.-|.+|+||||+...-.+.|+ .|-.-.-|-+-||- |.- ...-.|+.+.+-+|+..|.+.-+=+..
T Consensus 5 kvvvitGVpGvGKTTVl~~~~~~l~---~~~ivNyG~~Mle~A~k~glve~rD~~Rklp~e~Q~~lq~~Aa~rI~~~~~~ 81 (189)
T COG2019 5 KVVVITGVPGVGKTTVLKIALKELV---KHKIVNYGDLMLEIAKKKGLVEHRDEMRKLPLENQRELQAEAAKRIAEMALE 81 (189)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH---HCEEEEHHHHHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 5999975798872669999998775---2200007699999999838720289885298889999999999999974206
Q ss_pred CEECCCCCEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCC
Q ss_conf 005789811114788676705898600043100025678872699960267788
Q gi|254780826|r 291 VVVDECGIPNFKDSSVTENTRAAYPLNFIHNHAPQSIGKHPKHVIMLAADAFGV 344 (509)
Q Consensus 291 V~~d~~~~~df~d~s~TeNtR~~yp~~~i~n~~~~~~~~~p~~iifl~~d~~gv 344 (509)
+++|-...+ +|--|- +--+|..+.+.+ .|+-|+.|-.|+--+
T Consensus 82 iivDtH~~I------kTP~Gy----lpgLP~~Vl~~l--~pd~ivllEaDp~~I 123 (189)
T COG2019 82 IIVDTHATI------KTPAGY----LPGLPSWVLEEL--NPDVIVLLEADPEEI 123 (189)
T ss_pred EEEECCCEE------CCCCCC----CCCCCHHHHHHC--CCCEEEEEECCHHHH
T ss_conf 587324111------478766----778839999752--988799993798999
No 381
>TIGR00064 ftsY signal recognition particle-docking protein FtsY; InterPro: IPR004390 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes the cell division ABC transporter and the periplasmic substrate-binding protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In Escherichia coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.; GO: 0005525 GTP binding.
Probab=68.96 E-value=3.1 Score=21.52 Aligned_cols=135 Identities=30% Similarity=0.425 Sum_probs=65.9
Q ss_pred CCCCEEEEEEECCCCCCCC--------CCCCCCCEEEE----------CCCEEECC-CCCCCCCCCCCCCCCCCCCC-CC
Q ss_conf 7787027998335431112--------22478861330----------31102156-74123455532110135833-35
Q gi|254780826|r 215 KEKEDVALFFGLSGTGKTT--------LSASVDRFLIG----------DDEHGWSK-EGVFNFEGGCYAKSINLSKE-TE 274 (509)
Q Consensus 215 ~~~~d~alfFGLSGTGKTT--------LS~d~~r~Lig----------DDehgW~d-~gvfn~EgGcYaK~i~Ls~~-~E 274 (509)
.++-.|-||+|-=|||||| |.....+.||+ .+=-.|.+ .||=-+ .=.+. +.
T Consensus 79 ~~kp~Vil~VGVNG~GKTTTIaKLA~~l~~~Gk~V~laAgDTFRAAA~EQL~~Wa~R~gv~vi---------~~~~gn~D 149 (284)
T TIGR00064 79 EKKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEVWAKRLGVDVI---------KQKEGNAD 149 (284)
T ss_pred CCCCEEEEEEEEECCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHCCEEE---------ECCCCCCC
T ss_conf 789779999844088601028899999987499089982752479999999998988387554---------07889887
Q ss_pred H--HHHHHHHHCCHHHCCC--EE-CCCCCEECCCCCCCCCEEEEEECCCCCCCCCCCCC--CCCCEEEEEECCCCCCCCH
Q ss_conf 1--3588753011031240--05-78981111478867670589860004310002567--8872699960267788760
Q gi|254780826|r 275 P--EIFSASCRFGTVLENV--VV-DECGIPNFKDSSVTENTRAAYPLNFIHNHAPQSIG--KHPKHVIMLAADAFGVLPP 347 (509)
Q Consensus 275 P--~I~~aa~~~~ailENV--~~-d~~~~~df~d~s~TeNtR~~yp~~~i~n~~~~~~~--~~p~~iifl~~d~~gvlPp 347 (509)
| .||+|. + -|.-.|. ++ |=-||..- |.=-.==|.-|. |+..... ..|+.+ +|+=||.-
T Consensus 150 PAaV~fDAi-~-~Ak~~niDvvliDTAGRLqn-------k~NLm~EL~KI~-RV~~k~~~~~aP~e~-lLVlDAt~---- 214 (284)
T TIGR00064 150 PAAVIFDAI-Q-AAKARNIDVVLIDTAGRLQN-------KVNLMDELKKIK-RVIKKVDPVDAPDEV-LLVLDATT---- 214 (284)
T ss_pred CHHHHHHHH-H-HHHHCCCCEEEEECCCCCCC-------CHHHHHHHHHHH-HHHHHHHCCCCCCEE-EEEEHHHH----
T ss_conf 178999989-9-99874997899734754546-------620399999999-987321025787557-54220222----
Q ss_pred HHHCCHHHHHHH-HHHHCC----CCCCCCCCC
Q ss_conf 444185889999-974232----456662000
Q gi|254780826|r 348 VAYLNPEKAVYY-FLSGYT----AKVAGTEKG 374 (509)
Q Consensus 348 vsklt~~qa~~~-F~sGyT----~k~agte~g 374 (509)
-.=.-+||-++ =..++| +|+-||-+|
T Consensus 215 -Gqna~~QA~~F~eav~ltGiiLTKLDg~AKG 245 (284)
T TIGR00064 215 -GQNALEQAKVFNEAVGLTGIILTKLDGTAKG 245 (284)
T ss_pred -HHHHHHHHHHHHHHCCCCEEEEECCCCCCHH
T ss_conf -0308999999865406885899634688037
No 382
>KOG0061 consensus
Probab=68.96 E-value=2.2 Score=22.60 Aligned_cols=21 Identities=43% Similarity=0.593 Sum_probs=16.7
Q ss_pred CCCCEEEEEEECCCCCCCCCCC
Q ss_conf 7787027998335431112224
Q gi|254780826|r 215 KEKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 215 ~~~~d~alfFGLSGTGKTTLS~ 236 (509)
+.| ...+..|.||.|||||--
T Consensus 54 ~~G-el~AimG~SGsGKtTLL~ 74 (613)
T KOG0061 54 KPG-ELLAIMGPSGSGKTTLLN 74 (613)
T ss_pred ECC-EEEEEECCCCCCHHHHHH
T ss_conf 678-689997688877999999
No 383
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=68.87 E-value=2.1 Score=22.69 Aligned_cols=56 Identities=30% Similarity=0.351 Sum_probs=34.9
Q ss_pred CEEEEEEECCCCCCCCCCCCCCCEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHC
Q ss_conf 702799833543111222478861330311021567412345553211013583335135887530110312
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSASCRFGTVLE 289 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d~~r~LigDDehgW~d~gvfn~EgGcYaK~i~Ls~~~EP~I~~aa~~~~ailE 289 (509)
+.+.+..|..|||||+++..=- .+|.-..|.+.|. .+++ ...++...+.+||.-+|
T Consensus 23 g~~~lI~G~pGsGKT~f~~qfl------------~~~~~~ge~vlyv---s~~e-~~~~l~~~~~~~g~d~~ 78 (260)
T COG0467 23 GSVVLITGPPGTGKTIFALQFL------------YEGAREGEPVLYV---STEE-SPEELLENARSFGWDLE 78 (260)
T ss_pred CCEEEEEECCCCCHHHHHHHHH------------HHHHHCCCEEEEE---EEEC-CHHHHHHHHHHCCCCHH
T ss_conf 9789999389986899999999------------9776269858999---9206-98999999988099778
No 384
>PRK09354 recA recombinase A; Provisional
Probab=68.84 E-value=2.2 Score=22.51 Aligned_cols=36 Identities=25% Similarity=0.295 Sum_probs=26.5
Q ss_pred CEEEEEEECCCCCCCCCCCC--------CCCEEEECCCEEECCC
Q ss_conf 70279983354311122247--------8861330311021567
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS--------VDRFLIGDDEHGWSKE 253 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d--------~~r~LigDDehgW~d~ 253 (509)
+...-+||+..+|||||+.+ ....+.-|-||..+.+
T Consensus 60 GRivEi~G~esSGKTtlal~~iaeaQk~Gg~~a~iDaE~ald~~ 103 (350)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPV 103 (350)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHH
T ss_conf 70899988987779999999999999759947999600027988
No 385
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=68.77 E-value=2.3 Score=22.45 Aligned_cols=21 Identities=43% Similarity=0.626 Sum_probs=17.1
Q ss_pred CCEEEEEEECCCCCCCCCCCC
Q ss_conf 870279983354311122247
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~d 237 (509)
.+.+..+.|.+|.|||||-.-
T Consensus 25 ~Gei~~liGpNGaGKSTL~~~ 45 (230)
T TIGR03410 25 KGEVTCVLGRNGVGKTTLLKT 45 (230)
T ss_pred CCCEEEEECCCCCHHHHHHHH
T ss_conf 997999999999409999999
No 386
>PTZ00301 uridine kinase; Provisional
Probab=68.76 E-value=1.8 Score=23.06 Aligned_cols=106 Identities=16% Similarity=0.203 Sum_probs=50.3
Q ss_pred EEEEEEECCCCCCCCCCCC----------CCC-EEE-ECCCEEEC------CCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 0279983354311122247----------886-133-03110215------67412345553211013583335135887
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS----------VDR-FLI-GDDEHGWS------KEGVFNFEGGCYAKSINLSKETEPEIFSA 280 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d----------~~r-~Li-gDDehgW~------d~gvfn~EgGcYaK~i~Ls~~~EP~I~~a 280 (509)
-+...-|-||+||||++.. +.. .++ .|+=+-|. +.+..||. +|.
T Consensus 4 ~iIgIaGgSgSGKTT~a~~i~~~l~~~~~~~~v~ii~~D~Yy~d~~~~~~~~~~~~NfD--------------hP~---- 65 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESERAYTNYD--------------HPK---- 65 (210)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHCCCCCCC--------------CCC----
T ss_conf 89999688767899999999999876149980799836766778765886562788999--------------823----
Q ss_pred HHHCCHHHCCCE-ECCC---CCE--ECCCCCCCCCEEEEEECCCC--CCCC---CCCCCCCCCEEEEEECCCC
Q ss_conf 530110312400-5789---811--11478867670589860004--3100---0256788726999602677
Q gi|254780826|r 281 SCRFGTVLENVV-VDEC---GIP--NFKDSSVTENTRAAYPLNFI--HNHA---PQSIGKHPKHVIMLAADAF 342 (509)
Q Consensus 281 a~~~~ailENV~-~d~~---~~~--df~d~s~TeNtR~~yp~~~i--~n~~---~~~~~~~p~~iifl~~d~~ 342 (509)
++.+..+.+.+. +... ..| ||...+.+..++..+|-..| +... .+.+-..-.--||+-+|+.
T Consensus 66 a~D~dLl~~~L~~Lk~Gk~I~~P~Ydf~~h~R~~~~~~i~p~~vIIvEGi~~l~~~~lr~l~DlkIFvd~~~d 138 (210)
T PTZ00301 66 SLEHDLLTTHLRELKSGKTVQIPQYDYVHHTRSDTAVTMTPKSVLIVEGILLFTNAELRNEMDCLIFVDTPLD 138 (210)
T ss_pred CCCHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCEEEECCCCEEEEEEEHHCCCHHHHHHHCEEEEECCCHH
T ss_conf 0369999999999976996344665556776679708966885699971043078989977424577348723
No 387
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=68.68 E-value=1.3 Score=23.96 Aligned_cols=28 Identities=14% Similarity=0.159 Sum_probs=20.2
Q ss_pred CCEEE--EEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 98099--981674688768873207889999999998496
Q gi|254780826|r 410 CVDCW--LVNTGWTAGSYGEGYRMPLSVTRALLKAIFDNS 447 (509)
Q Consensus 410 ~~~vy--LvNTGw~Gg~~g~G~Ri~l~~Tr~ii~ai~~g~ 447 (509)
+-.+| .|||. +++.+.++.||..+.+-.
T Consensus 144 DlSiyDLVinTs----------~~~~~~v~~il~~aid~~ 173 (179)
T COG1102 144 DLSIYDLVINTS----------KWDPEEVFLILLDAIDAL 173 (179)
T ss_pred CCEEEEEEEECC----------CCCHHHHHHHHHHHHHHH
T ss_conf 663677887536----------678889999999998742
No 388
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=68.63 E-value=2.3 Score=22.36 Aligned_cols=19 Identities=37% Similarity=0.553 Sum_probs=16.2
Q ss_pred CEEEEEEECCCCCCCCCCC
Q ss_conf 7027998335431112224
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~ 236 (509)
+.+..+.|..|.|||||--
T Consensus 26 Gei~gllG~NGaGKSTLl~ 44 (208)
T cd03268 26 GEIYGFLGPNGAGKTTTMK 44 (208)
T ss_pred CCEEEEECCCCCCHHHHHH
T ss_conf 8199999999999999999
No 389
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=68.61 E-value=2.3 Score=22.42 Aligned_cols=21 Identities=33% Similarity=0.465 Sum_probs=17.2
Q ss_pred CCEEEEEEECCCCCCCCCCCC
Q ss_conf 870279983354311122247
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~d 237 (509)
.+.+..+.|.||.|||||---
T Consensus 277 ~GEi~gi~G~nGsGKsTL~~~ 297 (501)
T PRK10762 277 KGEILGVSGLMGAGRTELMKV 297 (501)
T ss_pred CCCEEEEECCCCCCHHHHHHH
T ss_conf 881899667888768899999
No 390
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=68.55 E-value=1.8 Score=23.19 Aligned_cols=20 Identities=30% Similarity=0.617 Sum_probs=16.5
Q ss_pred EEEEEEECCCCCCCCCCCCC
Q ss_conf 02799833543111222478
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSASV 238 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d~ 238 (509)
-+.|.=|-||+||+|||+.=
T Consensus 4 ~iiligG~sGvGKStla~~l 23 (197)
T PRK12339 4 TIHFIGGIPGVGKTSISGYI 23 (197)
T ss_pred EEEEEECCCCCCHHHHHHHH
T ss_conf 79998579988789999999
No 391
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=68.45 E-value=1.7 Score=23.24 Aligned_cols=16 Identities=44% Similarity=0.630 Sum_probs=14.0
Q ss_pred EEEEECCCCCCCCCCC
Q ss_conf 7998335431112224
Q gi|254780826|r 221 ALFFGLSGTGKTTLSA 236 (509)
Q Consensus 221 alfFGLSGTGKTTLS~ 236 (509)
.++.|++|+|||||-.
T Consensus 2 I~llG~~~~GKTsll~ 17 (159)
T cd04159 2 ITLVGLQNSGKTTLVN 17 (159)
T ss_pred EEEECCCCCCHHHHHH
T ss_conf 8999999986999999
No 392
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=68.44 E-value=2 Score=22.82 Aligned_cols=20 Identities=35% Similarity=0.444 Sum_probs=17.9
Q ss_pred CEEEEEEECCCCCCCCCCCC
Q ss_conf 70279983354311122247
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d 237 (509)
+.+.+.-|-+|||||||+..
T Consensus 32 g~~~li~G~~G~GKt~~~~~ 51 (241)
T PRK06067 32 GSLILIEGENDTGKSVLSQQ 51 (241)
T ss_pred CEEEEEECCCCCCHHHHHHH
T ss_conf 90899980799887999999
No 393
>KOG1805 consensus
Probab=68.42 E-value=1.8 Score=23.08 Aligned_cols=63 Identities=27% Similarity=0.439 Sum_probs=34.6
Q ss_pred CEEEEEEECCCCCCCCCCC--------CCCCEEEECCCEEECCCCCCCCCC-CCCCCCCCCCCCCCHHHHHH
Q ss_conf 7027998335431112224--------788613303110215674123455-53211013583335135887
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSA--------SVDRFLIGDDEHGWSKEGVFNFEG-GCYAKSINLSKETEPEIFSA 280 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~--------d~~r~LigDDehgW~d~gvfn~Eg-GcYaK~i~Ls~~~EP~I~~a 280 (509)
+|-+|..|+-||||||+=+ -.++.|+----|.=-|+=+.-+-+ |-|+=.++-...-.|++-..
T Consensus 685 edy~LI~GMPGTGKTTtI~~LIkiL~~~gkkVLLtsyThsAVDNILiKL~~~~i~~lRLG~~~kih~~v~e~ 756 (1100)
T KOG1805 685 EDYALILGMPGTGKTTTISLLIKILVALGKKVLLTSYTHSAVDNILIKLKGFGIYILRLGSEEKIHPDVEEF 756 (1100)
T ss_pred CCHHEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHH
T ss_conf 332203269989812259999999997388189985056788999998750671103448722244689987
No 394
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=68.21 E-value=2.1 Score=22.71 Aligned_cols=82 Identities=21% Similarity=0.223 Sum_probs=44.6
Q ss_pred HHHHCCCCCCCCCC--------CCCCCCCEEEHHHCCCCCCCCHHHHHH---HHHHHHHHHCCE----------------
Q ss_conf 97423245666200--------012565312100105001568315389---999999881980----------------
Q gi|254780826|r 360 FLSGYTAKVAGTEK--------GVLKPEATFSACFGAPFMPRDPVQYGN---ILKDYIVKYCVD---------------- 412 (509)
Q Consensus 360 F~sGyT~k~agte~--------g~~ep~~tfs~cFg~PF~~~~p~~ya~---ll~~~i~~~~~~---------------- 412 (509)
|+.=|-...+|-++ -+.+|.-...- +|+=.+.|++-+. +|.+.-++.+..
T Consensus 422 ~l~ryP~elSGGQrQRvaIARALa~~P~lli~D---Ep~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~d 498 (539)
T COG1123 422 FLDRYPHELSGGQRQRVAIARALALEPKLLILD---EPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIAD 498 (539)
T ss_pred HHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEEC---CCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHCC
T ss_conf 971386003852567899999985499899964---87432278999999999999999749889999587899986386
Q ss_pred -EEEEECCCC---CCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf -999816746---88768873207889999999998
Q gi|254780826|r 413 -CWLVNTGWT---AGSYGEGYRMPLSVTRALLKAIF 444 (509)
Q Consensus 413 -vyLvNTGw~---Gg~~g~G~Ri~l~~Tr~ii~ai~ 444 (509)
+.++.-|-+ |-..-+-..-.=+|||+++.|+-
T Consensus 499 rv~vm~~G~iVE~G~~~~v~~~p~h~Ytr~L~~avp 534 (539)
T COG1123 499 RVAVMYDGRIVEEGPTEKVFENPQHPYTRKLLAAVP 534 (539)
T ss_pred EEEEEECCEEEEECCHHHHHCCCCCHHHHHHHHHCC
T ss_conf 689997883777679999844999869999997365
No 395
>PRK00300 gmk guanylate kinase; Provisional
Probab=68.19 E-value=2.4 Score=22.27 Aligned_cols=19 Identities=32% Similarity=0.370 Sum_probs=16.5
Q ss_pred CEEEEEEECCCCCCCCCCC
Q ss_conf 7027998335431112224
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~ 236 (509)
+...++-|.||+|||||..
T Consensus 7 g~livisGPSG~GK~tl~~ 25 (208)
T PRK00300 7 GLLIVLSAPSGAGKSTLVR 25 (208)
T ss_pred CCEEEEECCCCCCHHHHHH
T ss_conf 8389999999889999999
No 396
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=68.11 E-value=1.9 Score=22.93 Aligned_cols=17 Identities=41% Similarity=0.557 Sum_probs=14.1
Q ss_pred EEEEECCCCCCCCCCCC
Q ss_conf 79983354311122247
Q gi|254780826|r 221 ALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 221 alfFGLSGTGKTTLS~d 237 (509)
.++-|.||+||+||...
T Consensus 2 ivi~GPSG~GK~tl~~~ 18 (137)
T cd00071 2 IVLSGPSGVGKSTLLKR 18 (137)
T ss_pred EEEECCCCCCHHHHHHH
T ss_conf 99999998899999999
No 397
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=68.11 E-value=2 Score=22.88 Aligned_cols=77 Identities=19% Similarity=0.276 Sum_probs=42.8
Q ss_pred CCCCEEEHHHCC------CCCCCCHHHHHHH-------HHHHHHHHCCEE--------EEEECCCCCCCCCC---CCCCC
Q ss_conf 565312100105------0015683153899-------999998819809--------99816746887688---73207
Q gi|254780826|r 377 KPEATFSACFGA------PFMPRDPVQYGNI-------LKDYIVKYCVDC--------WLVNTGWTAGSYGE---GYRMP 432 (509)
Q Consensus 377 ep~~tfs~cFg~------PF~~~~p~~ya~l-------l~~~i~~~~~~v--------yLvNTGw~Gg~~g~---G~Ri~ 432 (509)
+-...|+|-|-+ ||.|+....-..+ |.+++++.++.+ ||+..|+.-. ||. -.-|.
T Consensus 741 ~~~~~F~PEflnRid~ii~F~~L~~~~l~~I~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~g~~~~-~GAR~l~r~i~ 819 (852)
T TIGR03346 741 VLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLELSDAALDFLAEAGYDPV-YGARPLKRAIQ 819 (852)
T ss_pred HHHHHCCHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHCCCCC-CCHHHHHHHHH
T ss_conf 99965899899637868983789999999999999999999999779849988899999998488977-47156999999
Q ss_pred HHHHHHHHHHHHCCCCCCCCEE
Q ss_conf 8899999999984960246606
Q gi|254780826|r 433 LSVTRALLKAIFDNSIKSVPYR 454 (509)
Q Consensus 433 l~~Tr~ii~ai~~g~l~~~~~~ 454 (509)
-.....+-+.++.|++..-...
T Consensus 820 ~~i~~~la~~iL~g~~~~g~~v 841 (852)
T TIGR03346 820 REIENPLAKKILAGEVADGDTI 841 (852)
T ss_pred HHHHHHHHHHHHCCCCCCCCEE
T ss_conf 9988999999974888995989
No 398
>PRK10865 protein disaggregation chaperone; Provisional
Probab=68.08 E-value=0.82 Score=25.36 Aligned_cols=74 Identities=15% Similarity=0.213 Sum_probs=39.7
Q ss_pred CCEEEHHHCC------CCCCCCHHHHHH-------HHHHHHHHHCCEE--------EEEECCCCCCCCCC---CCCCCHH
Q ss_conf 5312100105------001568315389-------9999998819809--------99816746887688---7320788
Q gi|254780826|r 379 EATFSACFGA------PFMPRDPVQYGN-------ILKDYIVKYCVDC--------WLVNTGWTAGSYGE---GYRMPLS 434 (509)
Q Consensus 379 ~~tfs~cFg~------PF~~~~p~~ya~-------ll~~~i~~~~~~v--------yLvNTGw~Gg~~g~---G~Ri~l~ 434 (509)
...|.|-|-+ ||.|+....-.. .|.+++++.++++ ||+.-|+.-. ||. -+-|.-.
T Consensus 746 ~~~F~PEFlnRiD~iv~F~pL~~~~l~~Iv~~~l~~l~~rL~~~~i~l~~~~~a~~~l~~~gyd~~-~GARpl~r~I~~~ 824 (857)
T PRK10865 746 SHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSENGYDPV-YGARPLKRAIQQQ 824 (857)
T ss_pred HHHCCHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHCCCCC-CCHHHHHHHHHHH
T ss_conf 864798888237848982789999999999999999999999779849988899999998488977-4713789999999
Q ss_pred HHHHHHHHHHCCCCCCCCE
Q ss_conf 9999999998496024660
Q gi|254780826|r 435 VTRALLKAIFDNSIKSVPY 453 (509)
Q Consensus 435 ~Tr~ii~ai~~g~l~~~~~ 453 (509)
....+-+.++.|++.....
T Consensus 825 i~~~ls~~il~g~~~~g~~ 843 (857)
T PRK10865 825 IENPLAQQILSGELVPGKV 843 (857)
T ss_pred HHHHHHHHHHCCCCCCCCE
T ss_conf 8899999997288899698
No 399
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=68.06 E-value=2.1 Score=22.62 Aligned_cols=17 Identities=35% Similarity=0.454 Sum_probs=13.5
Q ss_pred EEEEECCCCCCCCCCCC
Q ss_conf 79983354311122247
Q gi|254780826|r 221 ALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 221 alfFGLSGTGKTTLS~d 237 (509)
...-|-||+|||||+..
T Consensus 2 IgIaG~S~SGKTTla~~ 18 (187)
T cd02024 2 VGISGVTNSGKTTLAKL 18 (187)
T ss_pred EEEECCCCCCHHHHHHH
T ss_conf 89968888759999999
No 400
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=67.89 E-value=2.3 Score=22.39 Aligned_cols=18 Identities=39% Similarity=0.492 Sum_probs=15.4
Q ss_pred EEEEEEECCCCCCCCCCC
Q ss_conf 027998335431112224
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~ 236 (509)
...++-|.||.||+||..
T Consensus 2 ~livl~GpsG~GK~tl~~ 19 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVK 19 (180)
T ss_pred EEEEEECCCCCCHHHHHH
T ss_conf 399998999889999999
No 401
>PRK13537 lipooligosaccharide transporter ATP-binding subunit; Provisional
Probab=67.84 E-value=2.5 Score=22.22 Aligned_cols=19 Identities=32% Similarity=0.394 Sum_probs=15.7
Q ss_pred CCEEEEEEECCCCCCCCCC
Q ss_conf 8702799833543111222
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLS 235 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS 235 (509)
.+.+..|.|..|.|||||-
T Consensus 30 ~Gei~gllGpNGAGKTTli 48 (304)
T PRK13537 30 PGECFGLLGPNGAGKTTTL 48 (304)
T ss_pred CCCEEEEECCCCCCHHHHH
T ss_conf 9959999999897299999
No 402
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=67.43 E-value=2.4 Score=22.27 Aligned_cols=18 Identities=39% Similarity=0.508 Sum_probs=14.7
Q ss_pred CCEEEEEEECCCCCCCCCC
Q ss_conf 8702799833543111222
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLS 235 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS 235 (509)
.+ +..+.|.+|.|||||-
T Consensus 25 ~G-i~gllGpNGAGKSTll 42 (211)
T cd03264 25 PG-MYGLLGPNGAGKTTLM 42 (211)
T ss_pred CC-EEEEECCCCCHHHHHH
T ss_conf 97-5999999982399999
No 403
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=67.41 E-value=8.6 Score=18.61 Aligned_cols=166 Identities=24% Similarity=0.345 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHCCC-CC-EEEEECCCCCCCCCCEEEEEEECCCCCCCC--------CCCCCCCEEEE---------
Q ss_conf 888778999999862410-78-799312453477787027998335431112--------22478861330---------
Q gi|254780826|r 184 AGEIKKSVFTYLNHIFPE-RG-IMPMHCSINMDKEKEDVALFFGLSGTGKTT--------LSASVDRFLIG--------- 244 (509)
Q Consensus 184 aGEiKKsiFtvmny~lp~-~g-~lpmHcsan~~~~~~d~alfFGLSGTGKTT--------LS~d~~r~Lig--------- 244 (509)
...+|..+-..|--+|.. .. -++. ..... .+-.|.||.|--|+|||| |.....+.|+.
T Consensus 106 ~~~v~~~l~~~l~~il~~~~~~~~~~--~~~~~-~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaA 182 (340)
T COG0552 106 EETVKEALREALIEILRPVDKVDLPL--EIPKE-KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAA 182 (340)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCHH--HHCCC-CCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHH
T ss_conf 89999999999999846554444365--52358-9867999993488863717999999999789869998233478999
Q ss_pred -CCCEEECC-CCCCCCCCCCCCCCCCCCCCCCH--HHHHHHHHCCHHHCCC---EECCCCCEECCCCCCCCCEEEEEECC
Q ss_conf -31102156-74123455532110135833351--3588753011031240---05789811114788676705898600
Q gi|254780826|r 245 -DDEHGWSK-EGVFNFEGGCYAKSINLSKETEP--EIFSASCRFGTVLENV---VVDECGIPNFKDSSVTENTRAAYPLN 317 (509)
Q Consensus 245 -DDehgW~d-~gvfn~EgGcYaK~i~Ls~~~EP--~I~~aa~~~~ailENV---~~d~~~~~df~d~s~TeNtR~~yp~~ 317 (509)
++-..|.+ .||--+.+ .+...| .+|+|..+ |.-.|. .+|--| ++-++..---.+.
T Consensus 183 iEQL~~w~er~gv~vI~~---------~~G~DpAaVafDAi~~--Akar~~DvvliDTAG-------RLhnk~nLM~EL~ 244 (340)
T COG0552 183 IEQLEVWGERLGVPVISG---------KEGADPAAVAFDAIQA--AKARGIDVVLIDTAG-------RLHNKKNLMDELK 244 (340)
T ss_pred HHHHHHHHHHHCCEEECC---------CCCCCCHHHHHHHHHH--HHHCCCCEEEEECCC-------CCCCCHHHHHHHH
T ss_conf 999999999959927825---------9999808999999999--997699999996755-------4457366899999
Q ss_pred CCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHCCHHHHHHH-HHHHCC----CCCCCCCCCCC
Q ss_conf 043100025678872699960267788760444185889999-974232----45666200012
Q gi|254780826|r 318 FIHNHAPQSIGKHPKHVIMLAADAFGVLPPVAYLNPEKAVYY-FLSGYT----AKVAGTEKGVL 376 (509)
Q Consensus 318 ~i~n~~~~~~~~~p~~iifl~~d~~gvlPpvsklt~~qa~~~-F~sGyT----~k~agte~g~~ 376 (509)
-|.....+-....|+. +||+-||.. -.=.-.||-.+ =..|.| +|+-||.+|..
T Consensus 245 KI~rV~~k~~~~ap~e-~llvlDAtt-----Gqnal~QAk~F~eav~l~GiIlTKlDgtAKGG~ 302 (340)
T COG0552 245 KIVRVIKKDDPDAPHE-ILLVLDATT-----GQNALSQAKIFNEAVGLDGIILTKLDGTAKGGI 302 (340)
T ss_pred HHHHHHCCCCCCCCCE-EEEEEECCC-----CHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCE
T ss_conf 9999846456899842-899977564-----756899999998752886699970246777624
No 404
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=67.24 E-value=2.6 Score=22.11 Aligned_cols=20 Identities=30% Similarity=0.436 Sum_probs=16.7
Q ss_pred CCCEEEEEEECCCCCCCCCCC
Q ss_conf 787027998335431112224
Q gi|254780826|r 216 EKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 216 ~~~d~alfFGLSGTGKTTLS~ 236 (509)
.| .+..+.|.+|.|||||--
T Consensus 25 ~G-ei~gllGpNGAGKSTll~ 44 (220)
T cd03265 25 RG-EIFGLLGPNGAGKTTTIK 44 (220)
T ss_pred CC-CEEEEECCCCCHHHHHHH
T ss_conf 98-399999999871999999
No 405
>KOG0057 consensus
Probab=66.87 E-value=3 Score=21.62 Aligned_cols=24 Identities=25% Similarity=0.482 Sum_probs=15.8
Q ss_pred CCCCCCCCCEEEEEEECCCCCCCCCC
Q ss_conf 45347778702799833543111222
Q gi|254780826|r 210 SINMDKEKEDVALFFGLSGTGKTTLS 235 (509)
Q Consensus 210 san~~~~~~d~alfFGLSGTGKTTLS 235 (509)
|-.+. .| +-..+-|-||.||+|+-
T Consensus 372 sf~I~-kG-ekVaIvG~nGsGKSTil 395 (591)
T KOG0057 372 SFTIP-KG-EKVAIVGSNGSGKSTIL 395 (591)
T ss_pred EEEEC-CC-CEEEEECCCCCCHHHHH
T ss_conf 58864-89-78989789998788999
No 406
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=66.83 E-value=2.7 Score=21.98 Aligned_cols=20 Identities=30% Similarity=0.574 Sum_probs=16.5
Q ss_pred CCCEEEEEEECCCCCCCCCCC
Q ss_conf 787027998335431112224
Q gi|254780826|r 216 EKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 216 ~~~d~alfFGLSGTGKTTLS~ 236 (509)
.| .+..+.|.+|.|||||-.
T Consensus 27 ~G-ei~~liGpNGaGKSTLl~ 46 (242)
T TIGR03411 27 PG-ELRVIIGPNGAGKTTMMD 46 (242)
T ss_pred CC-CEEEEECCCCCCHHHHHH
T ss_conf 99-899999899975999999
No 407
>PRK13768 GTPase; Provisional
Probab=66.80 E-value=2.3 Score=22.38 Aligned_cols=47 Identities=30% Similarity=0.479 Sum_probs=28.8
Q ss_pred EEEEEEECCCCCCCCCCCCCCCEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 02799833543111222478861330311021567412345553211013583335135887
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSA 280 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d~~r~LigDDehgW~d~gvfn~EgGcYaK~i~Ls~~~EP~I~~a 280 (509)
...++.|..|+||||+.+.=...|. .-|--..+++|++..|..-|.+
T Consensus 3 ~~~~ViGpaGSGKsT~~~~l~~~l~---------------~~~r~~~vvNLDPA~e~~pY~~ 49 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLVGALSDWLE---------------EQGYDVAIVNLDPAVEYLPYKP 49 (253)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH---------------HCCCCEEEEECCCCCCCCCCCC
T ss_conf 1899989999988999999999999---------------7699759997898665899998
No 408
>KOG4238 consensus
Probab=66.78 E-value=1.2 Score=24.26 Aligned_cols=96 Identities=22% Similarity=0.267 Sum_probs=57.5
Q ss_pred CCCCCCCCCCEEEHHHCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 20001256531210010500156831538999999988198099981674688768873207889999999998496024
Q gi|254780826|r 371 TEKGVLKPEATFSACFGAPFMPRDPVQYGNILKDYIVKYCVDCWLVNTGWTAGSYGEGYRMPLSVTRALLKAIFDNSIKS 450 (509)
Q Consensus 371 te~g~~ep~~tfs~cFg~PF~~~~p~~ya~ll~~~i~~~~~~vyLvNTGw~Gg~~g~G~Ri~l~~Tr~ii~ai~~g~l~~ 450 (509)
.|.|+-.|+.|+-+-|-.|.|---|+.----...+|. -+++-|+|---=.|=+.-.++
T Consensus 479 l~e~vldpe~tvvaifpspmmyagptevqwh~rsrm~-ag~~~yivgrdpagm~~pe~~--------------------- 536 (627)
T KOG4238 479 LEEGVLDPESTVVAIFPSPMMYAGPTEVQWHCRSRMI-AGANFYIVGRDPAGMPHPETK--------------------- 536 (627)
T ss_pred HHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHH-CCCEEEEECCCCCCCCCCCCC---------------------
T ss_conf 8722678652589964783102784142244777775-366058966686679999988---------------------
Q ss_pred CCEEECCCCCCCCCCCCCCCCHHHCCHHHHCCCHHHHHHHHHH
Q ss_conf 6606678877425620798996564976625998999999999
Q gi|254780826|r 451 VPYRVDENFGFSVPLEVKGVDRKLLNPRDSWNDVEAYDQKMRE 493 (509)
Q Consensus 451 ~~~~~~~~f~l~iP~~~~gv~~~~l~P~~~w~d~~~Y~~~a~~ 493 (509)
+--+.|.-|-.|-+-.||+-+--.-|- ..++|++++++
T Consensus 537 -~dlye~thgakvlsmapgl~~l~i~pf----rvaay~k~~k~ 574 (627)
T KOG4238 537 -KDLYEPTHGAKVLSMAPGLTSLEIIPF----RVAAYNKAKKA 574 (627)
T ss_pred -CCCCCCCCCCEEEEECCCCCEEEEEEE----EHHHHHHHHHH
T ss_conf -654566776345542677433555323----20232224542
No 409
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=66.74 E-value=2.1 Score=22.66 Aligned_cols=49 Identities=16% Similarity=0.144 Sum_probs=28.3
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCC----CCEEECCCCCCCCCCCCCCCCHHHCCHHH
Q ss_conf 73207889999999998496024----66066788774256207989965649766
Q gi|254780826|r 428 GYRMPLSVTRALLKAIFDNSIKS----VPYRVDENFGFSVPLEVKGVDRKLLNPRD 479 (509)
Q Consensus 428 G~Ri~l~~Tr~ii~ai~~g~l~~----~~~~~~~~f~l~iP~~~~gv~~~~l~P~~ 479 (509)
|.+++-.. -..+.+++||.|-= .+-...|- ..|..|+.-+...++++.+
T Consensus 169 ~d~~d~~I-~~~~~~i~Dg~IvLsr~la~~g~yPA--IDv~~S~SR~~~~i~~~~~ 221 (249)
T cd01128 169 GSRMDDVI-FEEFKGTGNMELVLDRRLAERRIFPA--IDILKSGTRKEELLLDPEE 221 (249)
T ss_pred CCCCCCHH-HHHHHHCCCEEEEECHHHHHCCCCCC--CCCCCCCCCCCHHHCCHHH
T ss_conf 76667268-99986517749996399997599986--4633462103401099999
No 410
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=66.65 E-value=2.2 Score=22.56 Aligned_cols=19 Identities=37% Similarity=0.401 Sum_probs=15.7
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
-....-|.||+||||++..
T Consensus 9 iiIgIaG~SgSGKTTv~~~ 27 (218)
T COG0572 9 IIIGIAGGSGSGKTTVAKE 27 (218)
T ss_pred EEEEEECCCCCCHHHHHHH
T ss_conf 9999867987788999999
No 411
>pfam07475 Hpr_kinase_C HPr Serine kinase C-terminal domain. This family represents the C terminal kinase domain of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria. This kinase in unusual in that it recognizes the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller.
Probab=66.50 E-value=3.3 Score=21.41 Aligned_cols=44 Identities=23% Similarity=0.250 Sum_probs=31.4
Q ss_pred EEECCCC-CCCCCCEEEEEEECCCCCCCCCCCC---CCCEEEECCCEEECC
Q ss_conf 9312453-4777870279983354311122247---886133031102156
Q gi|254780826|r 206 PMHCSIN-MDKEKEDVALFFGLSGTGKTTLSAS---VDRFLIGDDEHGWSK 252 (509)
Q Consensus 206 pmHcsan-~~~~~~d~alfFGLSGTGKTTLS~d---~~r~LigDDehgW~d 252 (509)
..|++.= +. | -..|+-|-||.||+.+..+ -...||.||-.-...
T Consensus 8 ~~Hg~lv~v~--G-~GVLi~G~sgiGKSe~aLeLi~rGh~LVaDD~v~~~~ 55 (171)
T pfam07475 8 SVHGVLVDVY--G-VGVLITGESGIGKSETALELIKRGHRLVADDAVEIKR 55 (171)
T ss_pred EEEEEEEEEC--C-EEEEEECCCCCCHHHHHHHHHHCCCEEEECCEEEEEE
T ss_conf 3779999982--7-7999985899987799999998299088067389999
No 412
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=66.46 E-value=2.6 Score=22.03 Aligned_cols=41 Identities=32% Similarity=0.442 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 67888778999999862410787993124534777870279983354311122247
Q gi|254780826|r 182 SYAGEIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 182 ~YaGEiKKsiFtvmny~lp~~g~lpmHcsan~~~~~~d~alfFGLSGTGKTTLS~d 237 (509)
.|.++.-+..++.+.|.+.. ++-.+++-|-.|||||||...
T Consensus 22 ~y~s~~h~~al~~L~~~l~~---------------~~g~~lltGe~GtGKTtllr~ 62 (269)
T TIGR03015 22 FYPSKGHKRAMAYLEYGLSQ---------------REGFILITGEVGAGKTTLIRN 62 (269)
T ss_pred CCCCHHHHHHHHHHHHHHHC---------------CCCEEEEECCCCCCHHHHHHH
T ss_conf 14786699999999999964---------------896599972998988999999
No 413
>PRK08116 hypothetical protein; Validated
Probab=66.45 E-value=1.7 Score=23.22 Aligned_cols=25 Identities=40% Similarity=0.539 Sum_probs=19.4
Q ss_pred EEEEEEECCCCCCCCCCCCCCCEEE
Q ss_conf 0279983354311122247886133
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSASVDRFLI 243 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d~~r~Li 243 (509)
..-+|+|-.|||||-|++.=-+.|+
T Consensus 109 ~GLll~G~~GtGKThLa~aIa~~l~ 133 (262)
T PRK08116 109 VGLLLWGSPGNGKTYLAAAIANELI 133 (262)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 6189989899989999999999999
No 414
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=66.28 E-value=2 Score=22.77 Aligned_cols=25 Identities=28% Similarity=0.537 Sum_probs=19.7
Q ss_pred EEEEEEECCCCCCCCCCCCCCCEEE
Q ss_conf 0279983354311122247886133
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSASVDRFLI 243 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d~~r~Li 243 (509)
...+|+|-+|||||-|.+.=...|+
T Consensus 106 ~nl~l~G~~G~GKthLa~Ai~~~l~ 130 (254)
T COG1484 106 ENLVLLGPPGVGKTHLAIAIGNELL 130 (254)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8289989999879999999999999
No 415
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=66.21 E-value=1 Score=24.68 Aligned_cols=26 Identities=38% Similarity=0.592 Sum_probs=18.8
Q ss_pred EEEEEECCCCCCCCCCCCCCCEEEEC
Q ss_conf 27998335431112224788613303
Q gi|254780826|r 220 VALFFGLSGTGKTTLSASVDRFLIGD 245 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS~d~~r~LigD 245 (509)
+.||.|.||+|||-|+..=-..|-||
T Consensus 598 sFLFlGPTGVGKTElAK~LA~~LFg~ 623 (852)
T TIGR03345 598 VFLLVGPSGVGKTETALALAELLYGG 623 (852)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 89987899877899999999997198
No 416
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=66.15 E-value=2.7 Score=21.92 Aligned_cols=20 Identities=30% Similarity=0.443 Sum_probs=16.3
Q ss_pred CCEEEEEEECCCCCCCCCCC
Q ss_conf 87027998335431112224
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~ 236 (509)
.++...+-|.+|+|||||--
T Consensus 349 ~Ge~iaivG~NGsGKSTLlk 368 (556)
T PRK11819 349 PGGIVGIIGPNGAGKSTLFK 368 (556)
T ss_pred CCCEEEEECCCCCCHHHHHH
T ss_conf 88247898898775889999
No 417
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=66.07 E-value=2.8 Score=21.85 Aligned_cols=18 Identities=33% Similarity=0.560 Sum_probs=15.5
Q ss_pred CEEEEEEECCCCCCCCCC
Q ss_conf 702799833543111222
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLS 235 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS 235 (509)
+.+..+.|.+|.|||||-
T Consensus 28 Gei~gllGpNGAGKTTl~ 45 (301)
T TIGR03522 28 GRIVGFLGPNGAGKSTTM 45 (301)
T ss_pred CCEEEEECCCCCCHHHHH
T ss_conf 819999999998199999
No 418
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=66.07 E-value=2.7 Score=21.94 Aligned_cols=65 Identities=20% Similarity=0.234 Sum_probs=36.2
Q ss_pred CCCCCCEEEHHHCCCCCCCCHHHHHHHHH---HHHHHHCCEEEEE-----------------ECCCCCCCCCCCC-----
Q ss_conf 12565312100105001568315389999---9998819809998-----------------1674688768873-----
Q gi|254780826|r 375 VLKPEATFSACFGAPFMPRDPVQYGNILK---DYIVKYCVDCWLV-----------------NTGWTAGSYGEGY----- 429 (509)
Q Consensus 375 ~~ep~~tfs~cFg~PF~~~~p~~ya~ll~---~~i~~~~~~vyLv-----------------NTGw~Gg~~g~G~----- 429 (509)
+.+|.-...- +|---+.++..++++. +.-+++|..+-+| .-|-+= -.|.
T Consensus 479 ~~~P~lLI~D---EPTs~LDv~~qa~il~Ll~~L~~~~g~til~IsHDl~~v~~~adrv~Vm~~G~iV---e~g~~~~v~ 552 (623)
T PRK10261 479 ALNPKVIIAD---EAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIV---EIGPRRAVF 552 (623)
T ss_pred HHCCCEEEEE---CCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHCCEEEEEECCEEE---EECCHHHHH
T ss_conf 9699999996---8866679999999999999999972989999868999999869999999898899---988889997
Q ss_pred -CCCHHHHHHHHHHHHC
Q ss_conf -2078899999999984
Q gi|254780826|r 430 -RMPLSVTRALLKAIFD 445 (509)
Q Consensus 430 -Ri~l~~Tr~ii~ai~~ 445 (509)
.=.=+|||++|+|+-.
T Consensus 553 ~~P~hpyT~~Ll~a~p~ 569 (623)
T PRK10261 553 ENPQHPYTRKLLAAVPV 569 (623)
T ss_pred HCCCCHHHHHHHHHCCC
T ss_conf 07999899999972899
No 419
>PRK06921 hypothetical protein; Provisional
Probab=65.58 E-value=2.3 Score=22.36 Aligned_cols=27 Identities=26% Similarity=0.481 Sum_probs=20.6
Q ss_pred CCEEEEEEECCCCCCCCCCCCCCCEEE
Q ss_conf 870279983354311122247886133
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSASVDRFLI 243 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~d~~r~Li 243 (509)
..+.-+|+|-+|||||-|++-=-..|+
T Consensus 115 ~~~~l~f~G~~G~GKThLa~aIa~~Ll 141 (265)
T PRK06921 115 RKNSIALLGQPGSGKTHLLTAAANELM 141 (265)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 766279972898988999999999999
No 420
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=65.51 E-value=3.7 Score=21.02 Aligned_cols=21 Identities=29% Similarity=0.619 Sum_probs=17.3
Q ss_pred CCEEEEEEECCCCCCCCCCCC
Q ss_conf 870279983354311122247
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~d 237 (509)
.+.++=+||-+|+|||.|.+.
T Consensus 102 ~g~ITEi~Ge~gsGKTQlc~q 122 (318)
T PRK04301 102 TQSITEFYGEFGSGKTQICHQ 122 (318)
T ss_pred CCEEEEEECCCCCCCHHHHHH
T ss_conf 670788866887870356677
No 421
>PRK10867 signal recognition particle protein; Provisional
Probab=65.41 E-value=3.7 Score=21.03 Aligned_cols=46 Identities=33% Similarity=0.384 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 877899999986241078799312453477787027998335431112224
Q gi|254780826|r 186 EIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 186 EiKKsiFtvmny~lp~~g~lpmHcsan~~~~~~d~alfFGLSGTGKTTLS~ 236 (509)
.+.|-+..-+--+|... ....+..+.+-.|.+|.||-|+||||-.+
T Consensus 73 ~i~kiv~~eL~~lLg~~-----~~~l~~~~~~p~VIm~vGLqGsGKTTT~a 118 (453)
T PRK10867 73 EFVKIVRNELVAAMGEE-----NQTLNLAAQPPAVVLMAGLQGAGKTTSVG 118 (453)
T ss_pred HHHHHHHHHHHHHHCCC-----CCCCCCCCCCCEEEEEECCCCCCHHHHHH
T ss_conf 99999999999985888-----76663378999699997468885185899
No 422
>PRK06761 hypothetical protein; Provisional
Probab=65.24 E-value=1.6 Score=23.42 Aligned_cols=17 Identities=35% Similarity=0.571 Sum_probs=13.1
Q ss_pred EEEEEECCCCCCCCCCC
Q ss_conf 27998335431112224
Q gi|254780826|r 220 VALFFGLSGTGKTTLSA 236 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS~ 236 (509)
-.+.=||+|+||||.+.
T Consensus 4 LIiIEGlPGsGKSTta~ 20 (281)
T PRK06761 4 LIIIEGLPGFGKSTTAH 20 (281)
T ss_pred EEEEECCCCCCHHHHHH
T ss_conf 79996689998014999
No 423
>pfam00910 RNA_helicase RNA helicase. This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.
Probab=65.20 E-value=2.1 Score=22.73 Aligned_cols=16 Identities=38% Similarity=0.704 Sum_probs=14.1
Q ss_pred EEEECCCCCCCCCCCC
Q ss_conf 9983354311122247
Q gi|254780826|r 222 LFFGLSGTGKTTLSAS 237 (509)
Q Consensus 222 lfFGLSGTGKTTLS~d 237 (509)
.++|-+|+|||+++..
T Consensus 2 ~l~G~~G~GKS~~a~~ 17 (105)
T pfam00910 2 WLYGPPGCGKSTLAKY 17 (105)
T ss_pred EEECCCCCCHHHHHHH
T ss_conf 8979998988999999
No 424
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=65.18 E-value=2.9 Score=21.72 Aligned_cols=19 Identities=37% Similarity=0.629 Sum_probs=16.3
Q ss_pred CEEEEEEECCCCCCCCCCC
Q ss_conf 7027998335431112224
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~ 236 (509)
+.+..+.|++|+|||||.-
T Consensus 289 GEi~gl~G~nGsGKsTL~~ 307 (510)
T PRK09700 289 GEILGFAGLVGSGRTELMN 307 (510)
T ss_pred CCEEEEECCCCCCHHHHHH
T ss_conf 8189997688862889999
No 425
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=65.09 E-value=2.5 Score=22.16 Aligned_cols=54 Identities=13% Similarity=0.094 Sum_probs=32.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH-CCEEEEEE--------CCCCCCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 5001568315389999999881-98099981--------6746887688732078899999999984
Q gi|254780826|r 388 APFMPRDPVQYGNILKDYIVKY-CVDCWLVN--------TGWTAGSYGEGYRMPLSVTRALLKAIFD 445 (509)
Q Consensus 388 ~PF~~~~p~~ya~ll~~~i~~~-~~~vyLvN--------TGw~Gg~~g~G~Ri~l~~Tr~ii~ai~~ 445 (509)
=.|.|+...+=.+.|.++.+.. ...||-=+ ++-.+| ..|..|...|...+-+-.
T Consensus 185 I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G----DAR~aidilr~A~eiAe~ 247 (366)
T COG1474 185 IVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG----DARKAIDILRRAGEIAER 247 (366)
T ss_pred EEECCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHHHHH
T ss_conf 552898989999999999985404687480399999998876186----477608999999998654
No 426
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=64.45 E-value=3.2 Score=21.49 Aligned_cols=40 Identities=20% Similarity=0.371 Sum_probs=25.0
Q ss_pred HHHHHHHHHHCCCCCCCCC----CCCCCCCCEEEHHHCCCCCCC
Q ss_conf 8899999742324566620----001256531210010500156
Q gi|254780826|r 354 EKAVYYFLSGYTAKVAGTE----KGVLKPEATFSACFGAPFMPR 393 (509)
Q Consensus 354 ~qa~~~F~sGyT~k~agte----~g~~ep~~tfs~cFg~PF~~~ 393 (509)
....-.|=-||-+.++-.- -|.....+.=-+-||+||+.-
T Consensus 452 HelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvV 495 (580)
T COG4618 452 HELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVV 495 (580)
T ss_pred HHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEE
T ss_conf 89997176876676578988777237899999999708970899
No 427
>KOG0635 consensus
Probab=64.40 E-value=1.5 Score=23.69 Aligned_cols=27 Identities=41% Similarity=0.599 Sum_probs=20.9
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCCCEE
Q ss_conf 787027998335431112224788613
Q gi|254780826|r 216 EKEDVALFFGLSGTGKTTLSASVDRFL 242 (509)
Q Consensus 216 ~~~d~alfFGLSGTGKTTLS~d~~r~L 242 (509)
.++-|.-.-||||+||+||.+.-+|.|
T Consensus 29 qkGcviWiTGLSgSGKStlACaL~q~L 55 (207)
T KOG0635 29 QKGCVIWITGLSGSGKSTLACALSQAL 55 (207)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 899689974257788025999999999
No 428
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=64.20 E-value=3.2 Score=21.49 Aligned_cols=19 Identities=26% Similarity=0.517 Sum_probs=15.9
Q ss_pred CCEEEEEEECCCCCCCCCC
Q ss_conf 8702799833543111222
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLS 235 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS 235 (509)
.+.+..|.|.+|.|||||-
T Consensus 32 ~Gei~gllGpNGAGKSTli 50 (306)
T PRK13536 32 SGECFGLLGPNGAGKSTIA 50 (306)
T ss_pred CCCEEEEECCCCCCHHHHH
T ss_conf 9969999999898099999
No 429
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=63.90 E-value=11 Score=17.84 Aligned_cols=53 Identities=17% Similarity=0.095 Sum_probs=25.6
Q ss_pred EEECCCHHHHHHHHHHHCCCEECCCCCEEEECCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 46279889999999972883882685489856876568713223616886544345
Q gi|254780826|r 12 VYRNLSTSRLYEESIRREKTILTCDGALRALTGQHTGRSAFDKFIVRDSHTENDVF 67 (509)
Q Consensus 12 v~~Nls~~eL~e~ai~~~eG~lt~~GAL~v~TG~~TGRSPkDKfIV~d~~t~d~I~ 67 (509)
+...++.+||.+.. ..-.+.+..++. --|-+.--+.|+=|.|.+--.--|.||
T Consensus 25 ~~~~~~~~el~~~i-~~~d~livrs~t--~v~~~~l~~a~~LK~I~r~GvG~DnID 77 (524)
T PRK13581 25 VKTGLDKEELLEII-GDYDALIVRSAT--KVTAEVIEAAKNLKVIGRAGVGVDNVD 77 (524)
T ss_pred ECCCCCHHHHHHHH-CCCCEEEECCCC--CCCHHHHHCCCCCEEEEECCCCCCHHC
T ss_conf 78998999999884-799699987899--829999926999769998881675116
No 430
>pfam00308 Bac_DnaA Bacterial dnaA protein.
Probab=63.79 E-value=0.41 Score=27.40 Aligned_cols=18 Identities=33% Similarity=0.499 Sum_probs=15.2
Q ss_pred EEEEEEECCCCCCCCCCC
Q ss_conf 027998335431112224
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~ 236 (509)
+...++|.||+|||.|..
T Consensus 35 npl~i~G~~G~GKTHLLq 52 (219)
T pfam00308 35 NPLFIYGGVGLGKTHLLH 52 (219)
T ss_pred CCEEEECCCCCCHHHHHH
T ss_conf 826998899998889999
No 431
>TIGR02928 TIGR02928 orc1/cdc6 family replication initiation protein; InterPro: IPR014277 This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. The proteins in this entry are found exclusively in the archaea. Several members may be found in a genome and interact with each other..
Probab=63.39 E-value=3.1 Score=21.60 Aligned_cols=29 Identities=17% Similarity=0.252 Sum_probs=19.1
Q ss_pred EEEEECCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 5898600043100025678872699960267
Q gi|254780826|r 311 RAAYPLNFIHNHAPQSIGKHPKHVIMLAADA 341 (509)
Q Consensus 311 R~~yp~~~i~n~~~~~~~~~p~~iifl~~d~ 341 (509)
|+-|-|..+.+.. .+.+-+..||.++.|.
T Consensus 160 ~~LY~L~Ra~~~~--~~~~~~vgvIgISND~ 188 (383)
T TIGR02928 160 KLLYQLSRARENG--DLENAKVGVIGISNDL 188 (383)
T ss_pred HHHHHHHHHHHCC--CCCCCCEEEEEEECCC
T ss_conf 8853433100035--7788534899986571
No 432
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=63.32 E-value=3.9 Score=20.90 Aligned_cols=19 Identities=42% Similarity=0.541 Sum_probs=15.9
Q ss_pred CEEEEEEECCCCCCCCCCC
Q ss_conf 7027998335431112224
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~ 236 (509)
++...+.|.+|+|||||--
T Consensus 345 Ge~ialvG~NGsGKSTLlk 363 (632)
T PRK11147 345 GDKIALIGPNGCGKTTLLK 363 (632)
T ss_pred CCEEEEECCCCCCHHHHHH
T ss_conf 8779998898842779999
No 433
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=63.26 E-value=1.4 Score=23.85 Aligned_cols=60 Identities=15% Similarity=0.142 Sum_probs=36.0
Q ss_pred HHHHCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCC------CC-CCEEEECCCEEECCCCC
Q ss_conf 986241078799312453477787027998335431112224------78-86133031102156741
Q gi|254780826|r 195 LNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSA------SV-DRFLIGDDEHGWSKEGV 255 (509)
Q Consensus 195 mny~lp~~g~lpmHcsan~~~~~~d~alfFGLSGTGKTTLS~------d~-~r~LigDDehgW~d~gv 255 (509)
+-|++-.+.-.-.+|++++.. +.-....-|-+|||||+++- +. .+..|-+|-|--++.++
T Consensus 29 ~~~~~a~h~e~l~~l~~~i~d-~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~ 95 (269)
T COG3267 29 LDYWAADHNEALLMLHAAIAD-GQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATL 95 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHC-CCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHH
T ss_conf 664320015999997777751-7855999744777636999999985578851799835763017889
No 434
>PRK08233 hypothetical protein; Provisional
Probab=63.19 E-value=2.7 Score=21.91 Aligned_cols=60 Identities=20% Similarity=0.378 Sum_probs=36.7
Q ss_pred HHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHC--CC-CCCCCEEECCCCCCCCCCCCCCCCHHHCCHH
Q ss_conf 99999881980999816746887688732078899999999984--96-0246606678877425620798996564976
Q gi|254780826|r 402 LKDYIVKYCVDCWLVNTGWTAGSYGEGYRMPLSVTRALLKAIFD--NS-IKSVPYRVDENFGFSVPLEVKGVDRKLLNPR 478 (509)
Q Consensus 402 l~~~i~~~~~~vyLvNTGw~Gg~~g~G~Ri~l~~Tr~ii~ai~~--g~-l~~~~~~~~~~f~l~iP~~~~gv~~~~l~P~ 478 (509)
|.+.| +.++|+ .| ..++...|.|..-+.. |. ++ +
T Consensus 94 lr~l~---D~kIfV-dt-----------p~Dirl~RRi~RDi~Er~gr~i~-----------------------s----- 130 (182)
T PRK08233 94 MRQYI---DVTIFI-DT-----------PLDIAMARRILRDFKEDTGNEIH-----------------------N----- 130 (182)
T ss_pred HHHHH---CEEEEE-CC-----------CHHHHHHHHHHHHHHHHCCCCHH-----------------------H-----
T ss_conf 99771---878997-28-----------68999999888887776188789-----------------------9-----
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 625998999999999999999999875127
Q gi|254780826|r 479 DSWNDVEAYDQKMRELLLMFENNAEKKQIK 508 (509)
Q Consensus 479 ~~w~d~~~Y~~~a~~L~~~F~~Nf~~~~~~ 508 (509)
-.+.|.+.++-.-..|++--++|++-
T Consensus 131 ----vl~qY~~~VrPm~~~fvePsk~~ADi 156 (182)
T PRK08233 131 ----DLKHYLNYARPLYLEALDTVKPNADI 156 (182)
T ss_pred ----HHHHHHHHHHHHHHHHHCHHHHCCCE
T ss_conf ----99999998788999985700321968
No 435
>pfam05673 DUF815 Protein of unknown function (DUF815). This family consists of several bacterial proteins of unknown function.
Probab=62.81 E-value=7.3 Score=19.07 Aligned_cols=152 Identities=22% Similarity=0.399 Sum_probs=65.9
Q ss_pred EEEEEEECCCCCCCCCCCCCCCEEEECCCEEECCCCCCCCCCCCCCCCCCCCCC---CCHHHHHHHHHCCHHHCCCEECC
Q ss_conf 027998335431112224788613303110215674123455532110135833---35135887530110312400578
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEGGCYAKSINLSKE---TEPEIFSASCRFGTVLENVVVDE 295 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d~~r~LigDDehgW~d~gvfn~EgGcYaK~i~Ls~~---~EP~I~~aa~~~~ailENV~~d~ 295 (509)
+-+|..|-.||||++|-..-- +-..+.|+ +.|-++++ .=|.|++. ++ + -+
T Consensus 54 nnvLLwG~RGtGKSSlVKall--------~~~~~~gL---------rlIEv~k~~L~~Lp~i~~~-l~------~---~~ 106 (248)
T pfam05673 54 NNVLLWGARGTGKSSLVKALL--------NEYADQGL---------RLIEVDKDDLGDLPDIVDL-LR------G---RP 106 (248)
T ss_pred CCEEEECCCCCCHHHHHHHHH--------HHHHHCCC---------EEEEECHHHHCCHHHHHHH-HH------C---CC
T ss_conf 136767689898889999999--------98631495---------6999878887219999999-96------4---99
Q ss_pred CC-CEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEC-CCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 98-111147886767058986000431000256788726999602-6778876044418588999997423245666200
Q gi|254780826|r 296 CG-IPNFKDSSVTENTRAAYPLNFIHNHAPQSIGKHPKHVIMLAA-DAFGVLPPVAYLNPEKAVYYFLSGYTAKVAGTEK 373 (509)
Q Consensus 296 ~~-~~df~d~s~TeNtR~~yp~~~i~n~~~~~~~~~p~~iifl~~-d~~gvlPpvsklt~~qa~~~F~sGyT~k~agte~ 373 (509)
.+ .+-+||-|..+|-.. | ..+....+.++...|.||++-.+ +.--.+|---.=+. + .++.. ++.
T Consensus 107 ~kFIiF~DDLSFe~~d~~-y--k~LKs~LeG~l~~~p~NvliYaTSNRRHLi~e~~~d~~-~------~~ei~--~~d-- 172 (248)
T pfam05673 107 YRFILFCDDLSFEEGESS-Y--KALKSVLEGGLEARPDNVLIYATSNRRHLIPEYMSDNE-G------DGEIH--PGD-- 172 (248)
T ss_pred CCEEEEECCCCCCCCCHH-H--HHHHHHHCCCCCCCCCEEEEEEECCCHHCCCHHHCCCC-C------CCCCC--CCH--
T ss_conf 757999635576789736-9--99999965764468873899984270003633323477-7------44367--255--
Q ss_pred CCCCCCCEEEHHHCC--CCCCCCHHHHHHHHHHHHHHHCCE
Q ss_conf 012565312100105--001568315389999999881980
Q gi|254780826|r 374 GVLKPEATFSACFGA--PFMPRDPVQYGNILKDYIVKYCVD 412 (509)
Q Consensus 374 g~~ep~~tfs~cFg~--PF~~~~p~~ya~ll~~~i~~~~~~ 412 (509)
..+-.-..|--||= .|-+..-..|-++....+++++..
T Consensus 173 -~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~~~~ 212 (248)
T pfam05673 173 -AVEEKLSLSDRFGLWLGFHPFDQDEYLAIVRGYAARLGLP 212 (248)
T ss_pred -HHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHCCCC
T ss_conf -7774534898677178507999999999999999982999
No 436
>pfam00931 NB-ARC NB-ARC domain.
Probab=62.77 E-value=3 Score=21.66 Aligned_cols=19 Identities=42% Similarity=0.639 Sum_probs=16.5
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
.+....|..|.|||||...
T Consensus 20 ~vI~I~G~gGiGKTtLA~~ 38 (285)
T pfam00931 20 GVVGIVGMGGVGKTTLAKQ 38 (285)
T ss_pred EEEEEECCCCCCHHHHHHH
T ss_conf 3999889995639999999
No 437
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=62.68 E-value=1.6 Score=23.51 Aligned_cols=21 Identities=38% Similarity=0.583 Sum_probs=16.9
Q ss_pred CCEEEEEEECCCCCCCCCCCC
Q ss_conf 870279983354311122247
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~d 237 (509)
.+++.-..|.||.||+||-+=
T Consensus 27 ~GeivtlMGPSGcGKSTLls~ 47 (213)
T COG4136 27 KGEIVTLMGPSGCGKSTLLSW 47 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHH
T ss_conf 784799877888657889999
No 438
>pfam00625 Guanylate_kin Guanylate kinase.
Probab=62.67 E-value=3 Score=21.61 Aligned_cols=17 Identities=29% Similarity=0.491 Sum_probs=14.9
Q ss_pred EEEEEECCCCCCCCCCC
Q ss_conf 27998335431112224
Q gi|254780826|r 220 VALFFGLSGTGKTTLSA 236 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS~ 236 (509)
..++-|.||.||+||..
T Consensus 3 livl~GPSG~GK~tl~~ 19 (182)
T pfam00625 3 PIVLSGPSGVGKSHIKK 19 (182)
T ss_pred EEEEECCCCCCHHHHHH
T ss_conf 69998989999999999
No 439
>PHA00729 NTP-binding motif containing protein
Probab=62.67 E-value=4 Score=20.82 Aligned_cols=71 Identities=11% Similarity=0.114 Sum_probs=45.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC-CCCCEEECCCCCCCCCCCC
Q ss_conf 01568315389999999881980999816746887688732078899999999984960-2466066788774256207
Q gi|254780826|r 390 FMPRDPVQYGNILKDYIVKYCVDCWLVNTGWTAGSYGEGYRMPLSVTRALLKAIFDNSI-KSVPYRVDENFGFSVPLEV 467 (509)
Q Consensus 390 F~~~~p~~ya~ll~~~i~~~~~~vyLvNTGw~Gg~~g~G~Ri~l~~Tr~ii~ai~~g~l-~~~~~~~~~~f~l~iP~~~ 467 (509)
|-+-.|..-+.-|.||. -|+|+--|.|-.-++ -|.+|..--+----+..|++ .+..+...+.|-.++|..+
T Consensus 124 FTTP~p~Di~~~lReK~------w~~I~I~~~~r~~~~-~~~~la~~~k~~~r~~~ge~~~~~~~~~~D~F~v~iPd~i 195 (228)
T PHA00729 124 FTTPSPDDLAFYLREKG------WYQIRVTMNGRKTMT-APATLAWISKDFIRNIKGEITTKVKKKALDLFKVEIPNDI 195 (228)
T ss_pred ECCCCHHHHHHHHHHHC------EEEEEEEECCCCCCC-CHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHCCHHH
T ss_conf 61798789999998701------799999974766664-4678899998874422430111000210232142097899
No 440
>KOG2851 consensus
Probab=62.63 E-value=5.2 Score=20.08 Aligned_cols=73 Identities=26% Similarity=0.400 Sum_probs=51.5
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCCEEECCCCC-CCCCCCCCCCCH----------HHCCHHHHCCCHHHHHHHHHHHH---
Q ss_conf 2078899999999984960246606678877-425620798996----------56497662599899999999999---
Q gi|254780826|r 430 RMPLSVTRALLKAIFDNSIKSVPYRVDENFG-FSVPLEVKGVDR----------KLLNPRDSWNDVEAYDQKMRELL--- 495 (509)
Q Consensus 430 Ri~l~~Tr~ii~ai~~g~l~~~~~~~~~~f~-l~iP~~~~gv~~----------~~l~P~~~w~d~~~Y~~~a~~L~--- 495 (509)
|+++++|+.+.. |-+++|-.+|-.| ..||..+..|++ .++.--+.-.|..+|.+..++++
T Consensus 313 RLDveVtk~~nH------LLKsPFcVHP~Tg~VcVPidv~~~d~Fdp~~vPti~~l~eEl~~~nd~~~~~e~~~d~~~~~ 386 (412)
T KOG2851 313 RLDVEVTKGTNH------LLKSPFCVHPKTGRVCVPIDVSKVDEFDPEKVPTISDLLEELESLNDEKEYTENRKDLARHG 386 (412)
T ss_pred CHHHHHHHCCHH------HHCCCCCCCCCCCCEEEECCHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHCC
T ss_conf 000235425106------54287422588886676425565033580028869999987862466542100034553224
Q ss_pred --HHHHHHHHHHHCC
Q ss_conf --9999999875127
Q gi|254780826|r 496 --LMFENNAEKKQIK 508 (509)
Q Consensus 496 --~~F~~Nf~~~~~~ 508 (509)
..+.++|+.|-.+
T Consensus 387 aL~pyv~~Fe~F~s~ 401 (412)
T KOG2851 387 ALSPYVEVFEAFVSA 401 (412)
T ss_pred CCCHHHHHHHHHHHH
T ss_conf 546389999999999
No 441
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=62.62 E-value=1.3 Score=24.07 Aligned_cols=29 Identities=38% Similarity=0.685 Sum_probs=20.3
Q ss_pred EEEEEECCCCCCCCCCCCCCCEEEECCCE
Q ss_conf 27998335431112224788613303110
Q gi|254780826|r 220 VALFFGLSGTGKTTLSASVDRFLIGDDEH 248 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS~d~~r~LigDDeh 248 (509)
+.+|.|.||.|||-|.-.=-..|-||+..
T Consensus 523 sFlF~GPTGVGKTELAkaLA~~Lfg~e~a 551 (786)
T COG0542 523 SFLFLGPTGVGKTELAKALAEALFGDEQA 551 (786)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 78866788656999999999996599744
No 442
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=62.61 E-value=4 Score=20.83 Aligned_cols=33 Identities=27% Similarity=0.385 Sum_probs=21.6
Q ss_pred CCEEEEEEECCCCCCCCCCC------CCC--CEEEECCCEE
Q ss_conf 87027998335431112224------788--6133031102
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSA------SVD--RFLIGDDEHG 249 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~------d~~--r~LigDDehg 249 (509)
++||....|-||+||+|+-- .|+ +..+++.|.-
T Consensus 31 ~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~ 71 (256)
T COG4598 31 AGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIR 71 (256)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEECCEEEE
T ss_conf 89889996589986268999998634888754888786898
No 443
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=62.58 E-value=1.8 Score=23.08 Aligned_cols=16 Identities=31% Similarity=0.480 Sum_probs=13.0
Q ss_pred EEEECCCCCCCCCCCC
Q ss_conf 9983354311122247
Q gi|254780826|r 222 LFFGLSGTGKTTLSAS 237 (509)
Q Consensus 222 lfFGLSGTGKTTLS~d 237 (509)
..=|+||+||||++.-
T Consensus 3 aIdGpagsGKsT~ak~ 18 (147)
T cd02020 3 AIDGPAGSGKSTVAKL 18 (147)
T ss_pred EEECCCCCCHHHHHHH
T ss_conf 8868997898999999
No 444
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=62.58 E-value=3.5 Score=21.16 Aligned_cols=65 Identities=29% Similarity=0.459 Sum_probs=38.4
Q ss_pred CCCEEEEEEECCCCCCCCCCC------CC--CCEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHH
Q ss_conf 787027998335431112224------78--8613303110215674123455532110135833351358875301103
Q gi|254780826|r 216 EKEDVALFFGLSGTGKTTLSA------SV--DRFLIGDDEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSASCRFGTV 287 (509)
Q Consensus 216 ~~~d~alfFGLSGTGKTTLS~------d~--~r~LigDDehgW~d~gvfn~EgGcYaK~i~Ls~~~EP~I~~aa~~~~ai 287 (509)
.| ....+-|.||+|||||-. || .+.+| | .+ -+-.+.-.++-+.|++-. -+|.+|+ +++
T Consensus 354 ~G-e~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~i-d-g~-----dI~~i~~~~lr~~i~~V~-Qd~~LF~-----~TI 419 (567)
T COG1132 354 PG-EKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILI-D-GI-----DIRDISLDSLRKRIGIVS-QDPLLFS-----GTI 419 (567)
T ss_pred CC-CEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEE-C-CE-----EHHHCCHHHHHHHEEEEC-CCCHHHH-----HHH
T ss_conf 89-878885588885789999998615888836989-9-99-----777538567887823546-6427777-----669
Q ss_pred HCCCEEC
Q ss_conf 1240057
Q gi|254780826|r 288 LENVVVD 294 (509)
Q Consensus 288 lENV~~d 294 (509)
.||+.+-
T Consensus 420 ~~NI~~g 426 (567)
T COG1132 420 RENIALG 426 (567)
T ss_pred HHHHHCC
T ss_conf 9997457
No 445
>pfam02562 PhoH PhoH-like protein. PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation.
Probab=62.50 E-value=2.8 Score=21.84 Aligned_cols=20 Identities=40% Similarity=0.617 Sum_probs=16.7
Q ss_pred EEEEEEECCCCCCCCCCCCC
Q ss_conf 02799833543111222478
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSASV 238 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d~ 238 (509)
+..+.+|.+|||||-|+.-.
T Consensus 20 ~iv~~~GpAGtGKT~la~~~ 39 (205)
T pfam02562 20 DIVFGIGPAGTGKTYLAVAA 39 (205)
T ss_pred CEEEEECCCCCCHHHHHHHH
T ss_conf 80799899986099999999
No 446
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=62.44 E-value=4.5 Score=20.46 Aligned_cols=19 Identities=47% Similarity=0.733 Sum_probs=12.7
Q ss_pred CEEEEEEECCCCCCCCCCC
Q ss_conf 7027998335431112224
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~ 236 (509)
-.+.++.||-|+||||-++
T Consensus 100 P~vImmvGLQGsGKTTt~~ 118 (451)
T COG0541 100 PTVILMVGLQGSGKTTTAG 118 (451)
T ss_pred CEEEEEEECCCCCHHHHHH
T ss_conf 8589998156797486899
No 447
>pfam03668 ATP_bind_2 P-loop ATPase protein family. This family contains an ATP-binding site and could be an ATPase (personal obs:C Yeats).
Probab=62.34 E-value=3.5 Score=21.24 Aligned_cols=209 Identities=19% Similarity=0.298 Sum_probs=97.8
Q ss_pred EEEEEEECCCCCCCCCCCCCCCEEEECCCEEECCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHCCHHHCCCEECCC-
Q ss_conf 027998335431112224788613303110215674123455-532110135833351358875301103124005789-
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEG-GCYAKSINLSKETEPEIFSASCRFGTVLENVVVDEC- 296 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d~~r~LigDDehgW~d~gvfn~Eg-GcYaK~i~Ls~~~EP~I~~aa~~~~ailENV~~d~~- 296 (509)
++.+.-||||.||||--. -+|+ |+|. ..+|....=|.+.+-....+.-.+++++-=+
T Consensus 2 ~lviVTGlSGAGKStAl~--------------------~LED~Gy~c-vDNlP~~Ll~~~~~~~~~~~~~~~~lAi~iD~ 60 (284)
T pfam03668 2 DLVIITGRSGAGKSVALR--------------------ALEDLGYYC-VDNLPPQLLPRLVDFLLAAGSRISSVAVVMDV 60 (284)
T ss_pred EEEEEECCCCCCHHHHHH--------------------HHHCCCCEE-ECCCCHHHHHHHHHHHHHCCCCCCEEEEEEEC
T ss_conf 699995799777999999--------------------998189247-75889999999999986247876526899963
Q ss_pred CCEECCCCCCCCCEEEEEECCCCCCCCC-CCCCCCCCEEEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 8111147886767058986000431000-256788726999602677887604441858899999742324566620001
Q gi|254780826|r 297 GIPNFKDSSVTENTRAAYPLNFIHNHAP-QSIGKHPKHVIMLAADAFGVLPPVAYLNPEKAVYYFLSGYTAKVAGTEKGV 375 (509)
Q Consensus 297 ~~~df~d~s~TeNtR~~yp~~~i~n~~~-~~~~~~p~~iifl~~d~~gvlPpvsklt~~qa~~~F~sGyT~k~agte~g~ 375 (509)
+...|.+. ++.... -...+....|+||.|+.- +| +.=|. |.+.
T Consensus 61 R~~~~~~~--------------~~~~~~~l~~~~~~~~ilFLdA~~~-~L---------------irRy~------eTRR 104 (284)
T pfam03668 61 RNRPFSGD--------------LDEQRNELATRAITPRILFLEADDD-TL---------------VRRYS------DTRR 104 (284)
T ss_pred CCCCCHHH--------------HHHHHHHHHHCCCCCEEEEEECCCH-HH---------------HHHHH------HCCC
T ss_conf 66533376--------------9999999986699826999978808-99---------------99888------7368
Q ss_pred CCCCCEEEHHHCCCCCCCCHH-HHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEE
Q ss_conf 256531210010500156831-5389999999881980999816746887688732078899999999984960246606
Q gi|254780826|r 376 LKPEATFSACFGAPFMPRDPV-QYGNILKDYIVKYCVDCWLVNTGWTAGSYGEGYRMPLSVTRALLKAIFDNSIKSVPYR 454 (509)
Q Consensus 376 ~ep~~tfs~cFg~PF~~~~p~-~ya~ll~~~i~~~~~~vyLvNTGw~Gg~~g~G~Ri~l~~Tr~ii~ai~~g~l~~~~~~ 454 (509)
.-|-+ ..-..+... ..-++|.. |++ .++ .++.| +.+++..-|..|...+.+.-...-..
T Consensus 105 ~HPL~-------~~~~~leaI~~Er~~L~~-lr~-~Ad-~vIDT----------S~l~~~~Lr~~i~~~~~~~~~~~l~i 164 (284)
T pfam03668 105 SHPLS-------GKQLSLEGIAAERRLLEP-LRA-RAD-LIIDT----------STLSVHGLRESIRRAFGGNGGATLTV 164 (284)
T ss_pred CCCCC-------CCCCCHHHHHHHHHHHHH-HHH-HCC-EEEEC----------CCCCHHHHHHHHHHHHCCCCCCCEEE
T ss_conf 89988-------889869999999999999-996-265-99856----------89999999999999864688886699
Q ss_pred ECCCCCCC--CCC---------------------CCCCCCHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 67887742--562---------------------079899656497662599899999999999999999987
Q gi|254780826|r 455 VDENFGFS--VPL---------------------EVKGVDRKLLNPRDSWNDVEAYDQKMRELLLMFENNAEK 504 (509)
Q Consensus 455 ~~~~f~l~--iP~---------------------~~~gv~~~~l~P~~~w~d~~~Y~~~a~~L~~~F~~Nf~~ 504 (509)
..-.|||. ||. ...|.|.++-+=-..+....++-++...|.......|++
T Consensus 165 ~i~SFGfK~GiP~dAD~VfDvRfLpNP~y~~~LR~lTG~D~~V~~yv~~~~~~~~f~~~i~~ll~~~lp~y~~ 237 (284)
T pfam03668 165 TVESFGFKYGIPIDADYVFDVRFLPNPHWDPELRPLTGLDKPVADYVLHHTEVAEFIESTRRLLSLWLPMYER 237 (284)
T ss_pred EEEECCCCCCCCCCCCEEEEECCCCCCCCCHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9996123577997664455613578998874445689998589999975910999999999999999998998
No 448
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=61.88 E-value=12 Score=17.60 Aligned_cols=97 Identities=18% Similarity=0.170 Sum_probs=37.5
Q ss_pred CCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC---EEECCCCCCCC-CCCC
Q ss_conf 5683153899999998819809998167468876887320788999999999849602466---06678877425-6207
Q gi|254780826|r 392 PRDPVQYGNILKDYIVKYCVDCWLVNTGWTAGSYGEGYRMPLSVTRALLKAIFDNSIKSVP---YRVDENFGFSV-PLEV 467 (509)
Q Consensus 392 ~~~p~~ya~ll~~~i~~~~~~vyLvNTGw~Gg~~g~G~Ri~l~~Tr~ii~ai~~g~l~~~~---~~~~~~f~l~i-P~~~ 467 (509)
|+.+.-..-+=.+.++.-+-.++||||+ |=.+=...++++|.-+|.|...- |...|.-+-.- ...+
T Consensus 212 Plt~~T~~lIn~~~l~~MK~ga~LIN~A----------RG~iVDe~AL~~AL~~g~I~gAalDVf~~EP~~~~~~~~s~L 281 (409)
T PRK11790 212 PETPSTKNMIGAEELALMKPGAILINAS----------RGTVVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPL 281 (409)
T ss_pred CCCHHHHCCCCHHHHHHCCCCCEEEECC----------CCHHCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCHH
T ss_conf 7984663104399997269998999868----------851039999999997399308997478999898787432434
Q ss_pred CCCCHHHCCHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 9899656497662599899999999999999
Q gi|254780826|r 468 KGVDRKLLNPRDSWNDVEAYDQKMRELLLMF 498 (509)
Q Consensus 468 ~gv~~~~l~P~~~w~d~~~Y~~~a~~L~~~F 498 (509)
-+.|.-++-|.-..+-.|+=++-+.+.|...
T Consensus 282 ~~~~NVilTPHiGasT~EAq~~~a~~~a~~l 312 (409)
T PRK11790 282 RGLDNVILTPHIGGSTQEAQENIGLEVAGKL 312 (409)
T ss_pred HCCCCEEECCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 4499765638777566999999999999999
No 449
>PRK09918 putative periplasmic chaperone protein; Provisional
Probab=61.83 E-value=5.8 Score=19.74 Aligned_cols=13 Identities=31% Similarity=0.636 Sum_probs=4.9
Q ss_pred CCEEEEEECCCCC
Q ss_conf 7269996026778
Q gi|254780826|r 331 PKHVIMLAADAFG 343 (509)
Q Consensus 331 p~~iifl~~d~~g 343 (509)
+..|-|-.-+.||
T Consensus 206 ~~~V~~~~INDYG 218 (230)
T PRK09918 206 PTKVRITPASRYG 218 (230)
T ss_pred CCEEEEEEEEECC
T ss_conf 8679999982055
No 450
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=61.70 E-value=3 Score=21.60 Aligned_cols=214 Identities=22% Similarity=0.248 Sum_probs=90.1
Q ss_pred CEEEEEEECCCCCCCCCCCC--------CCC-EEEECC---------CEEECCC-CCCCCCCCCCCCCCCCCCCCCH--H
Q ss_conf 70279983354311122247--------886-133031---------1021567-4123455532110135833351--3
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS--------VDR-FLIGDD---------EHGWSKE-GVFNFEGGCYAKSINLSKETEP--E 276 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d--------~~r-~LigDD---------ehgW~d~-gvfn~EgGcYaK~i~Ls~~~EP--~ 276 (509)
-.+.+|.||-|+||||-.+- ..+ .|+.-| =-.|.+. +|--+ +..+ +..| .
T Consensus 97 P~Vim~vGlqGsGKTTT~aKLA~~~kk~g~kv~lvaaDt~RpaA~eQL~~la~~~~v~~~-~~~~--------~~dp~~i 167 (433)
T PRK00771 97 PQTILLVGLQGSGKTTTAAKLARYFQKKGLKVGVICADTWRPGAYEQLKQLCEKINVPFY-GDPK--------EKDAVKI 167 (433)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCC-CCCC--------CCCHHHH
T ss_conf 858999737889789999999999997799467850678836899999999986388731-7889--------9999999
Q ss_pred HHHHHHHCCHHHCCCEECCCCCEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHCCHHHH
Q ss_conf 58875301103124005789811114788676705898600043100025678872699960267788760444185889
Q gi|254780826|r 277 IFSASCRFGTVLENVVVDECGIPNFKDSSVTENTRAAYPLNFIHNHAPQSIGKHPKHVIMLAADAFGVLPPVAYLNPEKA 356 (509)
Q Consensus 277 I~~aa~~~~ailENV~~d~~~~~df~d~s~TeNtR~~yp~~~i~n~~~~~~~~~p~~iifl~~d~~gvlPpvsklt~~qa 356 (509)
.++|..++.. ..-|.+|--|+..-++.-..| +..|...+ .|.. ++|+.|+. . -.-.-.||
T Consensus 168 ~~~a~~~~k~-~DvviiDTAGRl~~d~~Lm~E-------l~~i~~~~------~P~e-~llV~Da~--~---GQ~a~~~a 227 (433)
T PRK00771 168 VKEGLEKLKK-VDVIIVDTAGRHKLEKDLIEE-------MKQIKEIT------KPDE-VILVIDAT--I---GQQASEQA 227 (433)
T ss_pred HHHHHHHHCC-CCEEEEECCCCCCCCHHHHHH-------HHHHHHHH------CCCE-EEEEEECC--C---CHHHHHHH
T ss_conf 9999998456-988999776521040999999-------99998775------7976-89986544--2---26789999
Q ss_pred HH-HHHHHCC----CCCCCCCCCCC---------CCCCEEEHHHC---CCCCCCCHHHHHHHH---------HHHHHHHC
Q ss_conf 99-9974232----45666200012---------56531210010---500156831538999---------99998819
Q gi|254780826|r 357 VY-YFLSGYT----AKVAGTEKGVL---------KPEATFSACFG---APFMPRDPVQYGNIL---------KDYIVKYC 410 (509)
Q Consensus 357 ~~-~F~sGyT----~k~agte~g~~---------ep~~tfs~cFg---~PF~~~~p~~ya~ll---------~~~i~~~~ 410 (509)
.. +=-.+.| +|+-|+.+|.. .|..-. |.| +-|-+-||.+.|..+ .|++++..
T Consensus 228 ~~F~~~~~i~gvIlTKlDgdarGGaaLSi~~~t~~PI~Fi--G~GEk~~dle~F~p~r~asRILGmGDi~sLvEk~~~~~ 305 (433)
T PRK00771 228 KAFKEAVGIGGIIITKLDGTAKGGGALSAVAETGAPIKFI--GTGETIDDLEPFDPKRFISRLLGMGDLKSLLEKAEEVM 305 (433)
T ss_pred HHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCEEE--ECCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 9998753887379972567887305421898878995688--61787214886680889998708985899999999875
Q ss_pred CEE--EEEECCCCCCCCCCCCCCCHHHHHHHHHHHHC-CCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 809--99816746887688732078899999999984-9602466066788774256207989
Q gi|254780826|r 411 VDC--WLVNTGWTAGSYGEGYRMPLSVTRALLKAIFD-NSIKSVPYRVDENFGFSVPLEVKGV 470 (509)
Q Consensus 411 ~~v--yLvNTGw~Gg~~g~G~Ri~l~~Tr~ii~ai~~-g~l~~~~~~~~~~f~l~iP~~~~gv 470 (509)
-.- =.++ .-..| ++.+++-+.-+..+.. |.+... ....|.++..+|.....+
T Consensus 306 ~e~~~~~~~------k~~~g-~F~l~Df~~Q~~~i~kmG~~~~i-l~miPg~~~~~~~~~~~~ 360 (433)
T PRK00771 306 DEEAEEDVE------AMMKG-KFTLKDMYKQLEAMNKMGPLKQI-MSMLPGGGGKLPDEAIQV 360 (433)
T ss_pred HHHHHHHHH------HHHCC-CCCHHHHHHHHHHHHHCCCHHHH-HHHCCCCCCCCCHHHHHH
T ss_conf 599999999------87528-85699999999999810689999-863887421026355531
No 451
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=61.65 E-value=2.5 Score=22.16 Aligned_cols=18 Identities=39% Similarity=0.588 Sum_probs=14.3
Q ss_pred EEEEEECCCCCCCCCCCC
Q ss_conf 279983354311122247
Q gi|254780826|r 220 VALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS~d 237 (509)
-+.+=|.||+|||||-.|
T Consensus 637 lt~VtGvSGSGKStLi~~ 654 (944)
T PRK00349 637 FTCVTGVSGSGKSTLINE 654 (944)
T ss_pred EEEEECCCCCCHHHHHHH
T ss_conf 689961478863799999
No 452
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=61.55 E-value=1.2 Score=24.27 Aligned_cols=123 Identities=19% Similarity=0.283 Sum_probs=55.0
Q ss_pred EEEEEEECCCCCCCCCCCCCCCEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHC----------CHHH
Q ss_conf 027998335431112224788613303110215674123455532110135833351358875301----------1031
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSASCRF----------GTVL 288 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d~~r~LigDDehgW~d~gvfn~EgGcYaK~i~Ls~~~EP~I~~aa~~~----------~ail 288 (509)
..-||-|.+|+||+++.-.=-+.|...+..+... -|-|- -|..+....+|+++. +.+ -.+.
T Consensus 29 HA~Lf~Gp~G~GK~~~A~~~A~~LlC~~~~~~~~------Cg~C~-~C~~~~~~~HPD~~~--i~p~~~~i~idqiR~L~ 99 (329)
T PRK08058 29 HAYLFEGAKGTGKKATALWLAKSLFCLERNGVEP------CGTCT-NCKRIESGNHPDVHL--VAPDGQSIKKDQIRYLK 99 (329)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCC------CCCCH-HHHHHHCCCCCCEEE--ECCCCCCCCHHHHHHHH
T ss_conf 1565578999889999999999973999999998------87888-999987699997677--45661407799999999
Q ss_pred CCCEECCCCCEECCCCCCCCCEEEEEECCCCC-------CCCCCCCCCCCCEE-EEEEC-CCCCCCCH---------HHH
Q ss_conf 24005789811114788676705898600043-------10002567887269-99602-67788760---------444
Q gi|254780826|r 289 ENVVVDECGIPNFKDSSVTENTRAAYPLNFIH-------NHAPQSIGKHPKHV-IMLAA-DAFGVLPP---------VAY 350 (509)
Q Consensus 289 ENV~~d~~~~~df~d~s~TeNtR~~yp~~~i~-------n~~~~~~~~~p~~i-ifl~~-d~~gvlPp---------vsk 350 (509)
|.+.+.+ . +-+|=+|-++..+ |+--......|.++ |+|++ ++..+||- +..
T Consensus 100 ~~~~~~p----------~-~g~~KV~II~~Ae~m~~~AaNALLKtLEEPp~~t~fIL~t~~~~~lLpTI~SRCq~i~f~~ 168 (329)
T PRK08058 100 EEFSKSG----------V-ESNKKVYIIEHADKMTASAANSLLKFLEEPSGDTTAILLTENKHQILPTILSRCQVVEFRP 168 (329)
T ss_pred HHHCCCC----------C-CCCCEEEEEECHHHHCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHCCEEEECCC
T ss_conf 9964387----------5-7886799973477629999999999864689786799872996664368863142565889
Q ss_pred CCHHHHHHHHH
Q ss_conf 18588999997
Q gi|254780826|r 351 LNPEKAVYYFL 361 (509)
Q Consensus 351 lt~~qa~~~F~ 361 (509)
+++++...+..
T Consensus 169 ~~~~~i~~~L~ 179 (329)
T PRK08058 169 LPPESLIQRLQ 179 (329)
T ss_pred CCHHHHHHHHH
T ss_conf 99999999999
No 453
>PRK07270 DNA polymerase III subunits gamma and tau; Validated
Probab=61.41 E-value=2.5 Score=22.17 Aligned_cols=14 Identities=14% Similarity=0.643 Sum_probs=6.3
Q ss_pred CCHHHHCCCH-HHHH
Q ss_conf 4976625998-9999
Q gi|254780826|r 475 LNPRDSWNDV-EAYD 488 (509)
Q Consensus 475 l~P~~~w~d~-~~Y~ 488 (509)
..|.+-|..- ++|-
T Consensus 507 ~v~~~~W~~ir~ef~ 521 (557)
T PRK07270 507 AVPREDFQEIRAEFA 521 (557)
T ss_pred EEEHHHHHHHHHHHH
T ss_conf 830898999999999
No 454
>TIGR00432 arcsn_tRNA_tgt archaeosine tRNA-ribosyltransferase; InterPro: IPR004804 The archaeosine tRNA-guanine transglycosylase (tgt) differs from the tgt of Escherichia coli and other bacteria in the site of action and the modification that results. It exchanges 7-cyano-7-deazaguanine (preQ0) with guanine at position 15 of archaeal tRNA; this nucleotide is subsequently converted to archaeosine, found exclusively in the archaea. In contrast, bacterial tgt catalyzes the exchange of preQ0 or preQ1 for the guanine base at position 34; this nucleotide is subsequently modified to queuosine (IPR004803 from INTERPRO). Archaeoglobus fulgidus has both enzymes. .
Probab=61.40 E-value=8.2 Score=18.75 Aligned_cols=41 Identities=20% Similarity=0.331 Sum_probs=34.6
Q ss_pred CCCCCCCCEEECCCHHHHHHHHHHHCC-CEECCCCCEEEECCCCC
Q ss_conf 378682204627988999999997288-38826854898568765
Q gi|254780826|r 4 FDLEGSSRVYRNLSTSRLYEESIRREK-TILTCDGALRALTGQHT 47 (509)
Q Consensus 4 ~Gi~~~~~v~~Nls~~eL~e~ai~~~e-G~lt~~GAL~v~TG~~T 47 (509)
.=|||+.-||||+ ||+|.|+..|= |.+.-.|.+++++|-|-
T Consensus 50 ~VITN~YIIYR~P---elRE~AL~~GVH~~~~~D~P~MTDSGSyQ 91 (658)
T TIGR00432 50 IVITNAYIIYRSP---ELRERALEDGVHRLLDFDGPVMTDSGSYQ 91 (658)
T ss_pred EEEECEEEEECCH---HHHHHHHHCCCCEEECCCCCEEECCCCEE
T ss_conf 7983206675481---35889863476444207886430576311
No 455
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=61.33 E-value=2.5 Score=22.17 Aligned_cols=12 Identities=67% Similarity=0.977 Sum_probs=4.9
Q ss_pred EEEECCCCCCCC
Q ss_conf 998335431112
Q gi|254780826|r 222 LFFGLSGTGKTT 233 (509)
Q Consensus 222 lfFGLSGTGKTT 233 (509)
||-|..||||||
T Consensus 44 LF~GPRGvGKTT 55 (718)
T PRK07133 44 LFSGPHGTGKTS 55 (718)
T ss_pred EEECCCCCCHHH
T ss_conf 623899868899
No 456
>PRK09926 putative chaperone protein EcpD; Provisional
Probab=61.22 E-value=5.6 Score=19.84 Aligned_cols=10 Identities=20% Similarity=0.335 Sum_probs=3.9
Q ss_pred CEEECCCCCC
Q ss_conf 6066788774
Q gi|254780826|r 452 PYRVDENFGF 461 (509)
Q Consensus 452 ~~~~~~~f~l 461 (509)
.|.....+|-
T Consensus 228 ~~~~INDyGg 237 (245)
T PRK09926 228 HFYAINDFGG 237 (245)
T ss_pred EEEEEECCCC
T ss_conf 9999935999
No 457
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=61.18 E-value=2.7 Score=21.92 Aligned_cols=21 Identities=19% Similarity=0.419 Sum_probs=14.0
Q ss_pred CCCCHHHHHHHHHHHHCCCCC
Q ss_conf 320788999999999849602
Q gi|254780826|r 429 YRMPLSVTRALLKAIFDNSIK 449 (509)
Q Consensus 429 ~Ri~l~~Tr~ii~ai~~g~l~ 449 (509)
+|+.-+..|.+|+.++.-.+.
T Consensus 484 ~~l~~~e~~~~ie~i~~e~~g 504 (541)
T PRK05563 484 KRLEKPENKKVVEEIFSEVLK 504 (541)
T ss_pred HHHHHHHHHHHHHHHHHHHHC
T ss_conf 986127789999999999969
No 458
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=60.70 E-value=2.9 Score=21.76 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=15.1
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 7468876887320788999999999849
Q gi|254780826|r 419 GWTAGSYGEGYRMPLSVTRALLKAIFDN 446 (509)
Q Consensus 419 Gw~Gg~~g~G~Ri~l~~Tr~ii~ai~~g 446 (509)
.|..-+.|. .|--++..-.+|..++..
T Consensus 411 ~~~s~a~~~-~~~~l~~~~~~i~~~~~~ 437 (523)
T PRK08451 411 TWESNAQGE-DKELLRKGFKIIKEIVKE 437 (523)
T ss_pred EEEECCCCC-CHHHHHHHHHHHHHHHHH
T ss_conf 887346743-689886116999999999
No 459
>pfam03205 MobB Molybdopterin guanine dinucleotide synthesis protein B. This protein contains a P-loop.
Probab=60.68 E-value=3.4 Score=21.33 Aligned_cols=17 Identities=41% Similarity=0.585 Sum_probs=13.1
Q ss_pred EEEEEECCCCCCCCCCC
Q ss_conf 27998335431112224
Q gi|254780826|r 220 VALFFGLSGTGKTTLSA 236 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS~ 236 (509)
+.++-|-+++|||||..
T Consensus 2 ~v~i~G~~~sGKttl~~ 18 (122)
T pfam03205 2 IVLVVGPKDSGKTTLIR 18 (122)
T ss_pred EEEEECCCCCCHHHHHH
T ss_conf 79999489998999999
No 460
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=60.63 E-value=3.8 Score=20.94 Aligned_cols=84 Identities=14% Similarity=0.088 Sum_probs=37.7
Q ss_pred EEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCC-CCCCCCCCCCCCEEEHHHCCCCCCCCHHHHHHHHHHHHHHHCCE
Q ss_conf 99960267788760444185889999974232456-66200012565312100105001568315389999999881980
Q gi|254780826|r 334 VIMLAADAFGVLPPVAYLNPEKAVYYFLSGYTAKV-AGTEKGVLKPEATFSACFGAPFMPRDPVQYGNILKDYIVKYCVD 412 (509)
Q Consensus 334 iifl~~d~~gvlPpvsklt~~qa~~~F~sGyT~k~-agte~g~~ep~~tfs~cFg~PF~~~~p~~ya~ll~~~i~~~~~~ 412 (509)
-||.+|--=.-.|-+.+|... .|-|-.|--.+- .-.|....=-..+++. .||-|-....+++.-...+.. +.
T Consensus 266 ~vhvi~ggg~g~~~~r~L~~~--g~~v~~Gvl~~~D~d~~~A~~l~~~~v~e---~pF~pI~de~~~~~~~~~~~~--~~ 338 (409)
T PRK09536 266 SVHVVGGGQPAAPAVSRLVSA--GASVSVGPVPAGDTAAETARRVGCEAVTV---PPFKPIEDTTAASARAADLAA--AA 338 (409)
T ss_pred EEEEECCCCCHHHHHHHHHHC--CCCEEEECCCCCCCHHHHHHHCCCCEEEE---CCCCCCCHHHHHHHHHHHHHH--CC
T ss_conf 299988997369999999987--98169842767652489999719857853---698986877877544445442--02
Q ss_pred EEEEECCCCCCC
Q ss_conf 999816746887
Q gi|254780826|r 413 CWLVNTGWTAGS 424 (509)
Q Consensus 413 vyLvNTGw~Gg~ 424 (509)
+-+|+.|-++++
T Consensus 339 ~~~~~~~~~~~~ 350 (409)
T PRK09536 339 VVAVPVGATADP 350 (409)
T ss_pred EEEEECCCCCCC
T ss_conf 289874677899
No 461
>PRK06674 DNA polymerase III subunits gamma and tau; Validated
Probab=60.38 E-value=2.7 Score=21.93 Aligned_cols=39 Identities=13% Similarity=0.325 Sum_probs=16.7
Q ss_pred CCCCCHHHHHHHHHHHHHHH--CCC-CEEEEEEEEECCHHHCCEEEEECCCCHHHH
Q ss_conf 87588899999999999986--279-469974255178323640287228710778
Q gi|254780826|r 71 NKYISPADFDTLKADMLDYI--KDK-DLFLQDLVACPHTKNAISVCVVTQYAWHSL 123 (509)
Q Consensus 71 N~~i~~e~F~~L~~~v~~yl--~~k-~lyv~D~~~Gad~~~rl~vRvite~AwhaL 123 (509)
|..+ +....|.+++. |. .++ .+|+.|- +...+..||-||
T Consensus 98 n~gV--d~IR~i~~~v~-~~P~~~~yKV~IIDe-----------ah~Lt~~A~NAL 139 (563)
T PRK06674 98 NNGV--DEIRDIRDKVK-FAPSAVEYKVYIIDE-----------VHMLSIGAFNAL 139 (563)
T ss_pred CCCH--HHHHHHHHHHC-CCCCCCCEEEEEEEC-----------HHHCCHHHHHHH
T ss_conf 5787--99999999826-488678737999854-----------563799999999
No 462
>PRK00023 cmk cytidylate kinase; Provisional
Probab=60.32 E-value=2.1 Score=22.61 Aligned_cols=19 Identities=32% Similarity=0.398 Sum_probs=15.5
Q ss_pred EEEEEEECCCCCCCCCCCC
Q ss_conf 0279983354311122247
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d 237 (509)
-+...=|+||+||||++.-
T Consensus 5 iIIaIDGpagSGKST~ak~ 23 (225)
T PRK00023 5 PVIAIDGPAGSGKGTVAKI 23 (225)
T ss_pred CEEEEECCCCCCHHHHHHH
T ss_conf 7899658986787899999
No 463
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD; InterPro: IPR014138 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are related families..
Probab=60.20 E-value=4.8 Score=20.27 Aligned_cols=66 Identities=21% Similarity=0.259 Sum_probs=47.4
Q ss_pred CCCCEEEEEEECCCCCCCCCCCCCCCEEEECCCEEECCCCCCCCCCCCCCCCCCCC--CCCCHHHHHHHHHCCHHHCCC
Q ss_conf 77870279983354311122247886133031102156741234555321101358--333513588753011031240
Q gi|254780826|r 215 KEKEDVALFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEGGCYAKSINLS--KETEPEIFSASCRFGTVLENV 291 (509)
Q Consensus 215 ~~~~d~alfFGLSGTGKTTLS~d~~r~LigDDehgW~d~gvfn~EgGcYaK~i~Ls--~~~EP~I~~aa~~~~ailENV 291 (509)
|.| .+....|=||+|||+-+.. --|.-+.+++..+|--|.+=-.|. +.+|-+-|+. +..+.|++|-
T Consensus 10 k~G-~~~aLvG~SGSGKS~tc~A---------~Lg~L~~~~~~~~G~i~l~G~~~~~~p~kemr~~Rg-~~~~~imQnP 77 (239)
T TIGR02770 10 KRG-EVLALVGESGSGKSLTCLA---------ILGLLPPGLTQTSGEILLDGRPLLALPKKEMRSIRG-RHIATIMQNP 77 (239)
T ss_pred ECC-EEEEEECCCCCCHHHHHHH---------HHCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHH-HHHHHHCCCC
T ss_conf 324-3788874878758999999---------850358652231026677172314587368998866-6630110285
No 464
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=60.20 E-value=4.8 Score=20.28 Aligned_cols=19 Identities=32% Similarity=0.602 Sum_probs=15.4
Q ss_pred CEEEEEEECCCCCCCCCCC
Q ss_conf 7027998335431112224
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~ 236 (509)
+++.+..|.||-||+||--
T Consensus 28 getlvllgpsgagkssllr 46 (242)
T COG4161 28 GETLVLLGPSGAGKSSLLR 46 (242)
T ss_pred CCEEEEECCCCCCHHHHHH
T ss_conf 9779997788876467999
No 465
>PRK05416 hypothetical protein; Provisional
Probab=60.14 E-value=4 Score=20.81 Aligned_cols=210 Identities=20% Similarity=0.254 Sum_probs=93.9
Q ss_pred EEEEEEECCCCCCCCCCCCCCCEEEECCCEEECCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHCCHHHCCCEECCC-
Q ss_conf 027998335431112224788613303110215674123455-532110135833351358875301103124005789-
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEG-GCYAKSINLSKETEPEIFSASCRFGTVLENVVVDEC- 296 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d~~r~LigDDehgW~d~gvfn~Eg-GcYaK~i~Ls~~~EP~I~~aa~~~~ailENV~~d~~- 296 (509)
.+.+.-||||.||||--. -+|+ |+|. ..+|....=|...+.+ ......+++++-=+
T Consensus 7 ~lviVTGlSGAGKStAl~--------------------~LEDlGy~c-iDNlP~~Ll~~l~~~~-~~~~~~~~lAv~iD~ 64 (292)
T PRK05416 7 RLVIVTGLSGAGKSVALR--------------------ALEDLGYYC-VDNLPPSLLPKLVELL-AQSGGIDKVAVVIDV 64 (292)
T ss_pred EEEEEECCCCCCHHHHHH--------------------HHHHCCCEE-ECCCCHHHHHHHHHHH-HCCCCCCCEEEEEEC
T ss_conf 899996899787999999--------------------998179447-8688889999999997-247887706999824
Q ss_pred CCEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 81111478867670589860004310002567887269996026778876044418588999997423245666200012
Q gi|254780826|r 297 GIPNFKDSSVTENTRAAYPLNFIHNHAPQSIGKHPKHVIMLAADAFGVLPPVAYLNPEKAVYYFLSGYTAKVAGTEKGVL 376 (509)
Q Consensus 297 ~~~df~d~s~TeNtR~~yp~~~i~n~~~~~~~~~p~~iifl~~d~~gvlPpvsklt~~qa~~~F~sGyT~k~agte~g~~ 376 (509)
+...|.+. + ...+.+.. .. +....||||.|+.- +| .. =|. |.+..
T Consensus 65 R~~~~~~~-l---------~~~~~~l~--~~-~~~~~ilFLdA~~~-~L-----------lr----Ry~------eTRR~ 109 (292)
T PRK05416 65 RSRPFFLD-L---------PEALDELR--ER-GIDVRVLFLDASDE-VL-----------IR----RYS------ETRRR 109 (292)
T ss_pred CCCCCHHH-H---------HHHHHHHH--HC-CCCEEEEEEECCHH-HH-----------HH----HHH------HCCCC
T ss_conf 66544778-9---------99999998--57-99559999978869-99-----------99----887------50689
Q ss_pred CCCCEEEHHHCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC-EEE
Q ss_conf 5653121001050015683153899999998819809998167468876887320788999999999849602466-066
Q gi|254780826|r 377 KPEATFSACFGAPFMPRDPVQYGNILKDYIVKYCVDCWLVNTGWTAGSYGEGYRMPLSVTRALLKAIFDNSIKSVP-YRV 455 (509)
Q Consensus 377 ep~~tfs~cFg~PF~~~~p~~ya~ll~~~i~~~~~~vyLvNTGw~Gg~~g~G~Ri~l~~Tr~ii~ai~~g~l~~~~-~~~ 455 (509)
-|-+.. +.+ +.---...-++|...-+. -=+++.|. .+++..-|..|.....+.-.... ...
T Consensus 110 HPL~~~----~~~-L~eaI~~Er~~L~~ir~~---Ad~vIDTS----------~l~~~~Lr~~i~~~~~~~~~~~~l~i~ 171 (292)
T PRK05416 110 HPLSGD----GGS-LLEAIELERELLAPLRER---ADLVIDTS----------ELSVHQLRERIRERFGGEGRERELTVT 171 (292)
T ss_pred CCCCCC----CCC-HHHHHHHHHHHHHHHHHH---CCEEEECC----------CCCHHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf 998889----999-899999999999999974---02897479----------999999999999986556888855999
Q ss_pred CCCCCCC--CCC---------------------CCCCCCHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7887742--562---------------------07989965649766259989999999999999999998
Q gi|254780826|r 456 DENFGFS--VPL---------------------EVKGVDRKLLNPRDSWNDVEAYDQKMRELLLMFENNAE 503 (509)
Q Consensus 456 ~~~f~l~--iP~---------------------~~~gv~~~~l~P~~~w~d~~~Y~~~a~~L~~~F~~Nf~ 503 (509)
.-.|||. ||. ...|.|.++-+=-..+....+|-.+...+.......|.
T Consensus 172 i~SFGfK~GiP~dAD~VfDvRfLpNP~y~~~Lr~~tG~D~~V~~yv~~~~~~~~f~~~i~~~l~~~lp~y~ 242 (292)
T PRK05416 172 VESFGFKYGIPLDADLVFDVRFLPNPHYVPELRPLTGLDKPVADYVLAQPEVEEFLDQIRDLLEFWLPGYR 242 (292)
T ss_pred EEECCCCCCCCCCCCEEEEECCCCCCCCCHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99602456899753114551357899886443568999858999997492299999999999999999999
No 466
>KOG2028 consensus
Probab=59.89 E-value=3.6 Score=21.16 Aligned_cols=17 Identities=47% Similarity=0.778 Sum_probs=15.1
Q ss_pred EEEEEEECCCCCCCCCC
Q ss_conf 02799833543111222
Q gi|254780826|r 219 DVALFFGLSGTGKTTLS 235 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS 235 (509)
...+|.|.-|||||||.
T Consensus 163 pSmIlWGppG~GKTtlA 179 (554)
T KOG2028 163 PSMILWGPPGTGKTTLA 179 (554)
T ss_pred CCEEEECCCCCCHHHHH
T ss_conf 70588669987658899
No 467
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=59.73 E-value=5.1 Score=20.10 Aligned_cols=18 Identities=50% Similarity=0.746 Sum_probs=15.0
Q ss_pred EEEEEEECCCCCCCCCCC
Q ss_conf 027998335431112224
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~ 236 (509)
.+..|.|..|.||||--|
T Consensus 224 kvi~lVGPTGVGKTTTiA 241 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIA 241 (432)
T ss_pred EEEEEECCCCCCHHHHHH
T ss_conf 299998999988899999
No 468
>TIGR03563 perox_SACOL1771 peroxiredoxin, SACOL1771 subfamily. This protein family belongs to the OsmC/Ohr family (pfam02566, OsmC-like protein) of peroxiredoxins.
Probab=59.53 E-value=5.6 Score=19.84 Aligned_cols=11 Identities=9% Similarity=0.166 Sum_probs=4.2
Q ss_pred CCEEECCCCCC
Q ss_conf 11021567412
Q gi|254780826|r 246 DEHGWSKEGVF 256 (509)
Q Consensus 246 DehgW~d~gvf 256 (509)
+.-||+++-+|
T Consensus 37 ~g~gTNPEqLf 47 (138)
T TIGR03563 37 PGVGTNPDEML 47 (138)
T ss_pred CCCCCCHHHHH
T ss_conf 99998989999
No 469
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=59.33 E-value=3.8 Score=21.00 Aligned_cols=15 Identities=53% Similarity=0.742 Sum_probs=7.2
Q ss_pred EEEEECCCCCCCCCC
Q ss_conf 799833543111222
Q gi|254780826|r 221 ALFFGLSGTGKTTLS 235 (509)
Q Consensus 221 alfFGLSGTGKTTLS 235 (509)
++.+|..|||||+..
T Consensus 58 ~~I~G~pGTGKT~~v 72 (394)
T PRK00411 58 VLILGPPGTGKTTTV 72 (394)
T ss_pred EEEECCCCCCHHHHH
T ss_conf 799889999899999
No 470
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=59.16 E-value=3.1 Score=21.57 Aligned_cols=25 Identities=8% Similarity=0.216 Sum_probs=19.2
Q ss_pred EEEEEEECCCCCCCCCCCCCCCEEE
Q ss_conf 0279983354311122247886133
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSASVDRFLI 243 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d~~r~Li 243 (509)
..-||-|.+|+||+|+...=-+.|.
T Consensus 20 HAyLf~Gp~G~GK~~~A~~~A~~LL 44 (290)
T PRK05917 20 SAILLHGQDLSNLSQYAYELASLIL 44 (290)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 0687689998659999999999985
No 471
>KOG2878 consensus
Probab=59.09 E-value=5.3 Score=20.01 Aligned_cols=24 Identities=46% Similarity=0.708 Sum_probs=17.5
Q ss_pred CCCCCEEEEEEECC---CCCCCCCCCC
Q ss_conf 77787027998335---4311122247
Q gi|254780826|r 214 DKEKEDVALFFGLS---GTGKTTLSAS 237 (509)
Q Consensus 214 ~~~~~d~alfFGLS---GTGKTTLS~d 237 (509)
.++|+++-+|.|.| |+|||||+..
T Consensus 24 f~~G~~~Pl~igfSgPQGsGKstl~~a 50 (282)
T KOG2878 24 FKDGDDVPLVIGFSGPQGSGKSTLVFA 50 (282)
T ss_pred CCCCCCCCEEEEECCCCCCCCEEEHHH
T ss_conf 567886767999337888883043145
No 472
>TIGR00958 3a01208 antigen peptide transporter 2; InterPro: IPR005293 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Proteins of this family are involved in the transport of antigens from the cytoplasm to a membrane-bound compartment for association with MHC class I molecules.; GO: 0005215 transporter activity, 0006810 transport.
Probab=58.75 E-value=4.5 Score=20.50 Aligned_cols=20 Identities=40% Similarity=0.657 Sum_probs=16.5
Q ss_pred CCEEEEEEECCCCCCCCCCC
Q ss_conf 87027998335431112224
Q gi|254780826|r 217 KEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 217 ~~d~alfFGLSGTGKTTLS~ 236 (509)
-+.|+..-|+||.||+|.-+
T Consensus 558 PG~vvALVGPsGsGKStvaa 577 (770)
T TIGR00958 558 PGEVVALVGPSGSGKSTVAA 577 (770)
T ss_pred CCEEEEEECCCCCCHHHHHH
T ss_conf 86259986589983999999
No 473
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=58.73 E-value=2.9 Score=21.70 Aligned_cols=18 Identities=33% Similarity=0.667 Sum_probs=10.9
Q ss_pred EEEEEECCCCCCCCCCCC
Q ss_conf 279983354311122247
Q gi|254780826|r 220 VALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS~d 237 (509)
-+.+=|-||+||+||-.|
T Consensus 623 l~~VTGVSGSGKSTLi~~ 640 (1809)
T PRK00635 623 LTVVTGVSGSGKSSLIND 640 (1809)
T ss_pred EEEEECCCCCCHHHHHHH
T ss_conf 899958899997884888
No 474
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=58.46 E-value=3.9 Score=20.90 Aligned_cols=49 Identities=29% Similarity=0.340 Sum_probs=25.2
Q ss_pred CCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEECCC-EEECCCCCCCCC
Q ss_conf 5347778702799833543111222478861330311-021567412345
Q gi|254780826|r 211 INMDKEKEDVALFFGLSGTGKTTLSASVDRFLIGDDE-HGWSKEGVFNFE 259 (509)
Q Consensus 211 an~~~~~~d~alfFGLSGTGKTTLS~d~~r~LigDDe-hgW~d~gvfn~E 259 (509)
.|.-..-+|+.+.-|-||.|||||-.---+...+-+| .--.|.|...+-
T Consensus 402 vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~~p 451 (593)
T COG2401 402 LNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVP 451 (593)
T ss_pred EEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEECC
T ss_conf 03686478768999248877311999998776435620247877721034
No 475
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=58.45 E-value=14 Score=17.22 Aligned_cols=125 Identities=18% Similarity=0.199 Sum_probs=58.8
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHH-----HCCHHHCCCEECCCCCEECCCCCCCC-------CEEEEEECCCCCCCCCCCC
Q ss_conf 55321101358333513588753-----01103124005789811114788676-------7058986000431000256
Q gi|254780826|r 260 GGCYAKSINLSKETEPEIFSASC-----RFGTVLENVVVDECGIPNFKDSSVTE-------NTRAAYPLNFIHNHAPQSI 327 (509)
Q Consensus 260 gGcYaK~i~Ls~~~EP~I~~aa~-----~~~ailENV~~d~~~~~df~d~s~Te-------NtR~~yp~~~i~n~~~~~~ 327 (509)
.-|....+||+...+-+-....+ .-+.++.|.-+-..+ .|.|.+.++ |..+..-+ -.++.+.+
T Consensus 56 v~v~vi~~DLs~~~~~~~l~~~l~~~~~~IdvLVNNAG~g~~g--~f~~~~~~~~~~mi~lN~~a~~~L---T~~~lp~m 130 (265)
T COG0300 56 VEVEVIPADLSDPEALERLEDELKERGGPIDVLVNNAGFGTFG--PFLELSLDEEEEMIQLNILALTRL---TKAVLPGM 130 (265)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCC--CHHHCCHHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_conf 6279997767883679999999982488523899778747766--542188589999999999999999---99999999
Q ss_pred CCC-CCEEEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf 788-7269996026778876044418588999997423245666200012565312100105001568315389999999
Q gi|254780826|r 328 GKH-PKHVIMLAADAFGVLPPVAYLNPEKAVYYFLSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNILKDYI 406 (509)
Q Consensus 328 ~~~-p~~iifl~~d~~gvlPpvsklt~~qa~~~F~sGyT~k~agte~g~~ep~~tfs~cFg~PF~~~~p~~ya~ll~~~i 406 (509)
-.+ --+||-+..= +-+=|..+.+---|..+|+++|| +=|..-+
T Consensus 131 ~~~~~G~IiNI~S~--ag~~p~p~~avY~ATKa~v~~fS----------------------------------eaL~~EL 174 (265)
T COG0300 131 VERGAGHIINIGSA--AGLIPTPYMAVYSATKAFVLSFS----------------------------------EALREEL 174 (265)
T ss_pred HHCCCCEEEEEECH--HHCCCCCCHHHHHHHHHHHHHHH----------------------------------HHHHHHH
T ss_conf 86589669998434--53288863279999999999999----------------------------------9999983
Q ss_pred HHHCCEEEEEECCCCCCCC
Q ss_conf 8819809998167468876
Q gi|254780826|r 407 VKYCVDCWLVNTGWTAGSY 425 (509)
Q Consensus 407 ~~~~~~vyLvNTGw~Gg~~ 425 (509)
+..|++|..||.|++--..
T Consensus 175 ~~~gV~V~~v~PG~~~T~f 193 (265)
T COG0300 175 KGTGVKVTAVCPGPTRTEF 193 (265)
T ss_pred CCCCEEEEEEECCCCCCCC
T ss_conf 5898499999657333553
No 476
>pfam00735 Septin Septin. Members of this family include CDC3, CDC10, CDC11 and CDC12/Septin. Members of this family bind GTP. As regards the septins, these are polypeptides of 30-65kDa with three characteristic GTPase motifs (G-1, G-3 and G-4) that are similar to those of the Ras family. The G-4 motif is strictly conserved with a unique septin consensus of AKAD. Most septins are thought to have at least one coiled-coil region, which in some cases is necessary for intermolecular interactions that allow septins to polymerize to form rod-shaped complexes. In turn, these are arranged into tandem arrays to form filaments. They are multifunctional proteins, with roles in cytokinesis, sporulation, germ cell development, exocytosis and apoptosis.
Probab=58.27 E-value=4.1 Score=20.72 Aligned_cols=16 Identities=50% Similarity=0.628 Sum_probs=13.4
Q ss_pred EEEEEECCCCCCCCCC
Q ss_conf 2799833543111222
Q gi|254780826|r 220 VALFFGLSGTGKTTLS 235 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS 235 (509)
..+.-|-||+|||||-
T Consensus 6 nimvvG~sGlGKTTfi 21 (280)
T pfam00735 6 TLMVVGESGLGKTTLI 21 (280)
T ss_pred EEEEECCCCCCHHHHH
T ss_conf 9999779999789999
No 477
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB; InterPro: IPR014149 This entry represents TrbB, a protein, which is encoded in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer . TrbB is a homologue of the vir system VirB11 ATPase , and the Flp pilus system ATPase TadA ..
Probab=58.17 E-value=3.4 Score=21.32 Aligned_cols=15 Identities=53% Similarity=0.780 Sum_probs=11.5
Q ss_pred EEEEECCCCCCCCCC
Q ss_conf 799833543111222
Q gi|254780826|r 221 ALFFGLSGTGKTTLS 235 (509)
Q Consensus 221 alfFGLSGTGKTTLS 235 (509)
.|.-|=.|||||||.
T Consensus 142 Ilv~GGTGSGKTTLa 156 (315)
T TIGR02782 142 ILVVGGTGSGKTTLA 156 (315)
T ss_pred EEEECCCCCCHHHHH
T ss_conf 899814588579999
No 478
>pfam06068 TIP49 TIP49 C-terminus. This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear
Probab=58.11 E-value=4.9 Score=20.21 Aligned_cols=24 Identities=38% Similarity=0.475 Sum_probs=17.6
Q ss_pred CCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 777870279983354311122247
Q gi|254780826|r 214 DKEKEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 214 ~~~~~d~alfFGLSGTGKTTLS~d 237 (509)
++..+...|+-|..|||||.|...
T Consensus 46 ~K~aGraiLlaGppGTGKTAlA~a 69 (395)
T pfam06068 46 GKIAGRAVLIAGPPGTGKTALAIA 69 (395)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHH
T ss_conf 775773899877999888999999
No 479
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=57.91 E-value=4.3 Score=20.64 Aligned_cols=16 Identities=38% Similarity=0.528 Sum_probs=13.5
Q ss_pred EEEEEECCCCCCCCCC
Q ss_conf 2799833543111222
Q gi|254780826|r 220 VALFFGLSGTGKTTLS 235 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS 235 (509)
..+.-|-||+||||+-
T Consensus 6 nimVvG~sGlGKsTfi 21 (276)
T cd01850 6 NIMVVGESGLGKSTFI 21 (276)
T ss_pred EEEEECCCCCCHHHHH
T ss_conf 9999768999889999
No 480
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=57.64 E-value=4 Score=20.79 Aligned_cols=77 Identities=14% Similarity=0.191 Sum_probs=44.8
Q ss_pred CCCCEEEHHHCC------CCCCCCHHHHHHH-------HHHHHHHHCCEE--------EEEECCCCCCCCCC---CCCCC
Q ss_conf 565312100105------0015683153899-------999998819809--------99816746887688---73207
Q gi|254780826|r 377 KPEATFSACFGA------PFMPRDPVQYGNI-------LKDYIVKYCVDC--------WLVNTGWTAGSYGE---GYRMP 432 (509)
Q Consensus 377 ep~~tfs~cFg~------PF~~~~p~~ya~l-------l~~~i~~~~~~v--------yLvNTGw~Gg~~g~---G~Ri~ 432 (509)
+-...|+|=|-+ +|.|+....-..+ |.+++++.++++ ||+..|+.-. ||. -+-|.
T Consensus 631 ~l~~~F~PEFlNRiD~ii~F~~L~~~~l~~Iv~~~l~~l~~rL~~~~i~l~~~~~a~~~l~~~gyd~~-~GARpl~R~I~ 709 (758)
T PRK11034 631 EIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDWLAEKGYDRA-MGARPMARVIQ 709 (758)
T ss_pred HHHHHCCHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHCCCCC-CCCCHHHHHHH
T ss_conf 99954798677236747863889999999999999999999999789859988999999998488945-37112889999
Q ss_pred HHHHHHHHHHHHCCCCCCCCEE
Q ss_conf 8899999999984960246606
Q gi|254780826|r 433 LSVTRALLKAIFDNSIKSVPYR 454 (509)
Q Consensus 433 l~~Tr~ii~ai~~g~l~~~~~~ 454 (509)
-.....+-+.|+.|++.+-...
T Consensus 710 ~~i~~~La~~il~g~~~~g~~v 731 (758)
T PRK11034 710 DNLKKPLANELLFGSLVDGGQV 731 (758)
T ss_pred HHHHHHHHHHHHCCCCCCCCEE
T ss_conf 9988999999972988898989
No 481
>KOG0073 consensus
Probab=57.56 E-value=5.1 Score=20.12 Aligned_cols=23 Identities=43% Similarity=0.634 Sum_probs=18.0
Q ss_pred CCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 77870279983354311122247
Q gi|254780826|r 215 KEKEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 215 ~~~~d~alfFGLSGTGKTTLS~d 237 (509)
++.+--.+..||++.||||+-..
T Consensus 13 kerE~riLiLGLdNsGKTti~~k 35 (185)
T KOG0073 13 KEREVRILILGLDNSGKTTIVKK 35 (185)
T ss_pred HHHEEEEEEEECCCCCCHHHHHH
T ss_conf 52344799991278982448988
No 482
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=57.36 E-value=3.4 Score=21.26 Aligned_cols=17 Identities=47% Similarity=0.708 Sum_probs=14.0
Q ss_pred EEEEECCCCCCCCCCCC
Q ss_conf 79983354311122247
Q gi|254780826|r 221 ALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 221 alfFGLSGTGKTTLS~d 237 (509)
.+|-|+.|+||||++.-
T Consensus 3 IviEG~dGsGKsT~~~~ 19 (200)
T cd01672 3 IVFEGIDGAGKTTLIEL 19 (200)
T ss_pred EEEECCCCCCHHHHHHH
T ss_conf 99989989999999999
No 483
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=57.33 E-value=4.9 Score=20.23 Aligned_cols=34 Identities=24% Similarity=0.400 Sum_probs=21.5
Q ss_pred CCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 078799312453477787027998335431112224
Q gi|254780826|r 201 ERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 201 ~~g~lpmHcsan~~~~~~d~alfFGLSGTGKTTLS~ 236 (509)
..+-|+.--+.-. ++| -|.++.|+-|+||||-.+
T Consensus 191 ~~~~~~~~~~~~l-~~g-~VIaLVGvnGvGKTTTiA 224 (407)
T PRK12726 191 LSGKLAVEDSFDL-SNH-RIISLIGQTGVGKTTTLV 224 (407)
T ss_pred HCCCCCCCCEEEE-CCC-CEEEEECCCCCCHHHHHH
T ss_conf 5389770320230-369-089998999897899999
No 484
>pfam08298 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=57.16 E-value=8.8 Score=18.56 Aligned_cols=45 Identities=16% Similarity=0.363 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCC
Q ss_conf 778999999862410787993124534777870279983354311122247886
Q gi|254780826|r 187 IKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSASVDR 240 (509)
Q Consensus 187 iKKsiFtvmny~lp~~g~lpmHcsan~~~~~~d~alfFGLSGTGKTTLS~d~~r 240 (509)
|-+.|=.+++|+ |.+|.-+...+-+-++.|.-|+|||||..-=.|
T Consensus 63 me~~i~~iV~~~---------ksAA~g~e~~kqIllL~GPVGsGKSsl~e~LK~ 107 (358)
T pfam08298 63 MEETIERIVNYF---------RHAAQGLEERKQILYLLGPVGGGKSSLAERLKK 107 (358)
T ss_pred HHHHHHHHHHHH---------HHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHH
T ss_conf 599999999999---------999723672105899977898775899999998
No 485
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=57.12 E-value=5.2 Score=20.05 Aligned_cols=18 Identities=33% Similarity=0.575 Sum_probs=14.8
Q ss_pred EEEEEEECCCCCCCCCCC
Q ss_conf 027998335431112224
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~ 236 (509)
....++|.+|+|||.|..
T Consensus 39 ~~l~i~G~~GsGKTHLl~ 56 (226)
T TIGR03420 39 RFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred CEEEEECCCCCCHHHHHH
T ss_conf 869998999998899999
No 486
>PRK00131 aroK shikimate kinase; Reviewed
Probab=57.02 E-value=3.8 Score=20.99 Aligned_cols=17 Identities=29% Similarity=0.655 Sum_probs=13.1
Q ss_pred EEEEEECCCCCCCCCCC
Q ss_conf 27998335431112224
Q gi|254780826|r 220 VALFFGLSGTGKTTLSA 236 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS~ 236 (509)
-..+-|+.|+||||+.-
T Consensus 6 nI~liG~~GsGKTtvgk 22 (175)
T PRK00131 6 NIVLIGMMGAGKSTIGR 22 (175)
T ss_pred EEEEECCCCCCHHHHHH
T ss_conf 08988899999899999
No 487
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=56.99 E-value=11 Score=17.86 Aligned_cols=120 Identities=23% Similarity=0.278 Sum_probs=52.7
Q ss_pred CEEEEEEECCCCCCCCCCCC--------CCCEEEECCCEEECCCCCCCCCCC----CCCCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 70279983354311122247--------886133031102156741234555----321101358333513588753011
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSAS--------VDRFLIGDDEHGWSKEGVFNFEGG----CYAKSINLSKETEPEIFSASCRFG 285 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d--------~~r~LigDDehgW~d~gvfn~EgG----cYaK~i~Ls~~~EP~I~~aa~~~~ 285 (509)
.+-+|..|--||||+.|-.. .-|.+=.+-++.-+=--++..--+ .-.=|.+||-|..-+-|.+ .+
T Consensus 85 ANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~~Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~-LK-- 161 (287)
T COG2607 85 ANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLATLPDLVELLRARPEKFILFCDDLSFEEGDDAYKA-LK-- 161 (287)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHH-HH--
T ss_conf 523677637777747999999999874177079976888865799999996188608999567777778138999-99--
Q ss_pred HHHCCCEECCCCCEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEE---EEECCCCCC
Q ss_conf 03124005789811114788676705898600043100025678872699---960267788
Q gi|254780826|r 286 TVLENVVVDECGIPNFKDSSVTENTRAAYPLNFIHNHAPQSIGKHPKHVI---MLAADAFGV 344 (509)
Q Consensus 286 ailENV~~d~~~~~df~d~s~TeNtR~~yp~~~i~n~~~~~~~~~p~~ii---fl~~d~~gv 344 (509)
++||.=+-...-+|.|- -|.|.|-..|+++.+|.... -.-||+-.+ +=..|+||.
T Consensus 162 s~LeG~ve~rP~NVl~Y---ATSNRRHLl~e~~~dn~~~~-~eih~~eaveEKlSlSDRFGL 219 (287)
T COG2607 162 SALEGGVEGRPANVLFY---ATSNRRHLLPEDMKDNEGST-GEIHPSEAVEEKLSLSDRFGL 219 (287)
T ss_pred HHHCCCCCCCCCEEEEE---EECCCCCCCCHHHHHCCCCC-CCCCHHHHHHHHHCHHHHCCE
T ss_conf 98538855688707999---71587533627664277840-235806778776254642340
No 488
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=56.93 E-value=0.22 Score=29.23 Aligned_cols=22 Identities=32% Similarity=0.599 Sum_probs=13.6
Q ss_pred CEEEEEEECCCCCCCCCCCCCC
Q ss_conf 7027998335431112224788
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSASVD 239 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~d~~ 239 (509)
+++.||+-..=.|+--|+..|.
T Consensus 322 e~~Ql~Yqi~l~gr~dl~~ap~ 343 (704)
T PRK08691 322 EQIQLYYQIAVHGKRDLSLAPD 343 (704)
T ss_pred HHHHHHHHHHHHCCCCCCCCCC
T ss_conf 9999999999822022556997
No 489
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=56.87 E-value=6.8 Score=19.30 Aligned_cols=59 Identities=17% Similarity=0.036 Sum_probs=33.7
Q ss_pred CCCCCCCHHHHHHH---HHHHHHHHCC-----------------EEEEEECCCCC---CCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 50015683153899---9999988198-----------------09998167468---8768873207889999999998
Q gi|254780826|r 388 APFMPRDPVQYGNI---LKDYIVKYCV-----------------DCWLVNTGWTA---GSYGEGYRMPLSVTRALLKAIF 444 (509)
Q Consensus 388 ~PF~~~~p~~ya~l---l~~~i~~~~~-----------------~vyLvNTGw~G---g~~g~G~Ri~l~~Tr~ii~ai~ 444 (509)
+|=-.+..+.-++. |++.-+++++ +|+.+--|++= ....+-+.=.-+|||.+++++-
T Consensus 179 EPTTALDvtvQaqIl~ll~~l~~e~~~siilITHDl~vva~~aDrv~VMYaG~iVE~g~~~~i~~~P~HPYT~~Ll~s~P 258 (316)
T COG0444 179 EPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIFKNPKHPYTRGLLNSLP 258 (316)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCCCCCHHHHHHHHHCC
T ss_conf 98604519999999999999998549789999488899997456689987758998678888743899867999997385
Q ss_pred CC
Q ss_conf 49
Q gi|254780826|r 445 DN 446 (509)
Q Consensus 445 ~g 446 (509)
+-
T Consensus 259 ~~ 260 (316)
T COG0444 259 RL 260 (316)
T ss_pred CC
T ss_conf 44
No 490
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=56.75 E-value=3.7 Score=21.07 Aligned_cols=45 Identities=18% Similarity=0.433 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 7888778999999862410787993124534777870279983354311122247
Q gi|254780826|r 183 YAGEIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 183 YaGEiKKsiFtvmny~lp~~g~lpmHcsan~~~~~~d~alfFGLSGTGKTTLS~d 237 (509)
.+| |-+.+=.+++|+ +++|.-+...+-+-++-|.-|+|||||-.-
T Consensus 53 ~fG-~e~~i~~~V~~~---------k~AA~g~~~~k~IllL~GPvGsGKStl~~~ 97 (361)
T smart00763 53 FFG-MEEAIERFVNYF---------KSAAQGLEERKQILYLLGPVGGGKSSLVEC 97 (361)
T ss_pred HCC-CHHHHHHHHHHH---------HHHHHCCCCCCEEEEEECCCCCCHHHHHHH
T ss_conf 116-489999999999---------999844671256999988998877999999
No 491
>PRK06696 uridine kinase; Validated
Probab=56.74 E-value=2.7 Score=21.98 Aligned_cols=18 Identities=28% Similarity=0.447 Sum_probs=14.8
Q ss_pred EEEEEECCCCCCCCCCCC
Q ss_conf 279983354311122247
Q gi|254780826|r 220 VALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS~d 237 (509)
....=|.||+|||||...
T Consensus 28 ~VgIdG~~gSGKTTlA~~ 45 (227)
T PRK06696 28 RVAIDGITASGKTTFANE 45 (227)
T ss_pred EEEEECCCCCCHHHHHHH
T ss_conf 999778998787999999
No 492
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=56.65 E-value=1.8 Score=23.14 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=15.8
Q ss_pred CCCEEEEEEECCCCCCCCCCCC
Q ss_conf 7870279983354311122247
Q gi|254780826|r 216 EKEDVALFFGLSGTGKTTLSAS 237 (509)
Q Consensus 216 ~~~d~alfFGLSGTGKTTLS~d 237 (509)
.+. -.++-|.||||||-|...
T Consensus 193 tKk-nvIL~G~pGtGKT~lAk~ 213 (459)
T PRK11331 193 IKK-NIILQGPPGVGKTFVARR 213 (459)
T ss_pred CCC-CEEEECCCCCCHHHHHHH
T ss_conf 588-279658999887899999
No 493
>TIGR02288 PaaN_2 phenylacetic acid degradation protein paaN; InterPro: IPR011975 This enzyme is proposed to act in the ring-opening step of phenylacetic acid degradation which follows ligation of the acid with coenzyme A (by PaaF) and hydroxylation by a multicomponent non-heme iron hydroxylase complex (PaaGHIJK). Gene symbols have been standardized in . This enzyme is related to aldehyde dehydrogenase family. This family includes sequences from Burkholderia, Bordetella, Streptomyces. Other PaaN enzymes are represented by a separate entry, IPR011966 from INTERPRO..
Probab=56.42 E-value=4.3 Score=20.59 Aligned_cols=70 Identities=30% Similarity=0.407 Sum_probs=44.3
Q ss_pred CCCEEEHHHCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCC---CCCC--CCCCCHHHHHHHHHHHHCCCCCCCC
Q ss_conf 6531210010500156831538999999988198099981674688---7688--7320788999999999849602466
Q gi|254780826|r 378 PEATFSACFGAPFMPRDPVQYGNILKDYIVKYCVDCWLVNTGWTAG---SYGE--GYRMPLSVTRALLKAIFDNSIKSVP 452 (509)
Q Consensus 378 p~~tfs~cFg~PF~~~~p~~ya~ll~~~i~~~~~~vyLvNTGw~Gg---~~g~--G~Ri~l~~Tr~ii~ai~~g~l~~~~ 452 (509)
-++-|-+|||.+|=.-.|... ||+|| |||+ |=+.|--.+-.+|++...+-- .
T Consensus 48 G~aafeAL~G~~f~L~~P~~~--------------------G~~G~E~SPYG~ELGv~YP~~d~~~L~~a~~~Al~---~ 104 (560)
T TIGR02288 48 GQAAFEALLGKDFDLGQPGAS--------------------GWVGGEVSPYGVELGVTYPQVDLDALLEAARKALP---G 104 (560)
T ss_pred HHHHHHHHCCCCCCCCCCCCC--------------------CCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHH---H
T ss_conf 999999865881223676867--------------------62204417862034621776566889999985226---6
Q ss_pred EEECCCCCCCCCCCCCCCCHHHCC
Q ss_conf 066788774256207989965649
Q gi|254780826|r 453 YRVDENFGFSVPLEVKGVDRKLLN 476 (509)
Q Consensus 453 ~~~~~~f~l~iP~~~~gv~~~~l~ 476 (509)
|+.-. |.-=-||-.|||+
T Consensus 105 Wr~aG------A~~R~GvcLEILq 122 (560)
T TIGR02288 105 WRDAG------ARARVGVCLEILQ 122 (560)
T ss_pred HHHHC------CCCCHHHHHHHHH
T ss_conf 66106------2002014288999
No 494
>PRK13409 putative ATPase RIL; Provisional
Probab=56.23 E-value=4.9 Score=20.24 Aligned_cols=19 Identities=37% Similarity=0.489 Sum_probs=15.8
Q ss_pred CEEEEEEECCCCCCCCCCC
Q ss_conf 7027998335431112224
Q gi|254780826|r 218 EDVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 218 ~d~alfFGLSGTGKTTLS~ 236 (509)
+++..+.|-.|+|||||.-
T Consensus 365 GEiigIvG~NGaGKTTLlK 383 (590)
T PRK13409 365 GEVIGIVGPNGIGKTTFVK 383 (590)
T ss_pred CCEEEEECCCCCCHHHHHH
T ss_conf 7489998888887899999
No 495
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein; InterPro: IPR013505 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). FtsE is an ABC transporter ATP-binding protein. This protein and its permease partner FtsX, localize to the cell division site. In a number of species, the ftsEX gene pair is located next to ftsY, which encodes the signal recognition particle-docki ng protein.; GO: 0005524 ATP binding, 0051301 cell division.
Probab=56.08 E-value=5.1 Score=20.10 Aligned_cols=135 Identities=25% Similarity=0.243 Sum_probs=82.0
Q ss_pred CCCEEEEEEECCCCCCCCCCC------CCC----------------------CE---EEECCCEEECCCCCC-CCCCCCC
Q ss_conf 787027998335431112224------788----------------------61---330311021567412-3455532
Q gi|254780826|r 216 EKEDVALFFGLSGTGKTTLSA------SVD----------------------RF---LIGDDEHGWSKEGVF-NFEGGCY 263 (509)
Q Consensus 216 ~~~d~alfFGLSGTGKTTLS~------d~~----------------------r~---LigDDehgW~d~gvf-n~EgGcY 263 (509)
+++.-+=+-|-||.||+||=- .|. |. .|-+|-+...|..|+ |.-= =
T Consensus 27 ~kGem~fL~GHSGaGKST~lkLi~~~~~P~~G~i~~~G~d~~~L~~r~~P~LRr~iG~VFQD~~LL~drtv~dNVa~--p 104 (216)
T TIGR00960 27 DKGEMVFLVGHSGAGKSTLLKLILGIEKPTRGKIRFSGQDLTRLRGREVPFLRRHIGMVFQDHRLLSDRTVYDNVAL--P 104 (216)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCEEEECCEEECCHHHHHHCCHHHHHHH--H
T ss_conf 38507998568886078999999852289986078715421001577467300010426701155311655455243--3
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCHHHCCCEECCCCCEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCC
Q ss_conf 11013583335135887530110312400578981111478867670589860004310002567887269996026778
Q gi|254780826|r 264 AKSINLSKETEPEIFSASCRFGTVLENVVVDECGIPNFKDSSVTENTRAAYPLNFIHNHAPQSIGKHPKHVIMLAADAFG 343 (509)
Q Consensus 264 aK~i~Ls~~~EP~I~~aa~~~~ailENV~~d~~~~~df~d~s~TeNtR~~yp~~~i~n~~~~~~~~~p~~iifl~~d~~g 343 (509)
-..|+.+...- -.+--+.||.|-+.....-+=..-|.-|-=|++.-|-.+. .| -.|.+|
T Consensus 105 L~iiG~~~~~~------~~rv~~aL~~VGL~~K~~~lP~~LSGGEQQRv~IARA~V~---------~P---~lLLAD--- 163 (216)
T TIGR00960 105 LRIIGVPGRDI------NERVSAALEKVGLKGKAHALPVQLSGGEQQRVAIARAVVN---------KP---ALLLAD--- 163 (216)
T ss_pred HHHCCCCCCCH------HHHHHHHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHCC---------CC---CCEEEE---
T ss_conf 55228997426------7899999873061121240762004850345566444306---------79---701310---
Q ss_pred CCCHHHHCCHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 87604441858899999742324566620001
Q gi|254780826|r 344 VLPPVAYLNPEKAVYYFLSGYTAKVAGTEKGV 375 (509)
Q Consensus 344 vlPpvsklt~~qa~~~F~sGyT~k~agte~g~ 375 (509)
=|-.=|+|+-+.--|=+=.+....||-+=+
T Consensus 164 --EPTGNLD~~~S~~il~Lf~~~n~~G~TVl~ 193 (216)
T TIGR00960 164 --EPTGNLDPELSRDILRLFEEFNRAGTTVLV 193 (216)
T ss_pred --CCCCCCCHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf --889887888899999999875037854777
No 496
>KOG0077 consensus
Probab=55.57 E-value=4.8 Score=20.29 Aligned_cols=51 Identities=29% Similarity=0.363 Sum_probs=28.9
Q ss_pred EEEEEEECCCCCCCCCCCCC--CCEEEECCCEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 02799833543111222478--861330311021567412345553211013583
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSASV--DRFLIGDDEHGWSKEGVFNFEGGCYAKSINLSK 271 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d~--~r~LigDDehgW~d~gvfn~EgGcYaK~i~Ls~ 271 (509)
...+||||.--|||||-+-= +| ++.-.--|-+..---.=||--.+|+||--
T Consensus 21 gKllFlGLDNAGKTTLLHMLKdDr--l~qhvPTlHPTSE~l~Ig~m~ftt~DLGG 73 (193)
T KOG0077 21 GKLLFLGLDNAGKTTLLHMLKDDR--LGQHVPTLHPTSEELSIGGMTFTTFDLGG 73 (193)
T ss_pred CEEEEEEECCCCHHHHHHHHCCCC--CCCCCCCCCCCHHHHEECCCEEEEECCCC
T ss_conf 518999515775266898873300--11357876897677313571589972566
No 497
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=55.55 E-value=6.2 Score=19.55 Aligned_cols=171 Identities=27% Similarity=0.251 Sum_probs=76.6
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCCCEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHCCCEECC
Q ss_conf 78702799833543111222478861330311021567412345553211013583335135887530110312400578
Q gi|254780826|r 216 EKEDVALFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSASCRFGTVLENVVVDE 295 (509)
Q Consensus 216 ~~~d~alfFGLSGTGKTTLS~d~~r~LigDDehgW~d~gvfn~EgGcYaK~i~Ls~~~EP~I~~aa~~~~ailENV~~d~ 295 (509)
.| .+....|=||.|||||.-- +++=.+ ...|-.-|+|-= -..++++. ...+--.+|+.|-+.+
T Consensus 38 ~g-e~~glVGESG~GKSTlgr~----i~~L~~---pt~G~i~f~g~~---i~~~~~~~------~~~~v~elL~~Vgl~~ 100 (268)
T COG4608 38 EG-ETLGLVGESGCGKSTLGRL----ILGLEE---PTSGEILFEGKD---ITKLSKEE------RRERVLELLEKVGLPE 100 (268)
T ss_pred CC-CEEEEEECCCCCHHHHHHH----HHCCCC---CCCCEEEECCCC---HHHCCHHH------HHHHHHHHHHHHCCCH
T ss_conf 89-8789993688877879999----972838---887269986853---11136667------9999999999809887
Q ss_pred C---CCEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHCC-HHHHHHHHHHHCCCCCCCC
Q ss_conf 9---81111478867670589860004310002567887269996026778876044418-5889999974232456662
Q gi|254780826|r 296 C---GIPNFKDSSVTENTRAAYPLNFIHNHAPQSIGKHPKHVIMLAADAFGVLPPVAYLN-PEKAVYYFLSGYTAKVAGT 371 (509)
Q Consensus 296 ~---~~~df~d~s~TeNtR~~yp~~~i~n~~~~~~~~~p~~iifl~~d~~gvlPpvsklt-~~qa~~~F~sGyT~k~agt 371 (509)
+ +-|.- -|=.+.-|+ -.+ ......|+ ++.|| =|+|-|+ +-||.--=++...-+
T Consensus 101 ~~~~ryPhe--lSGGQrQRi-------~IA--RALal~P~---liV~D-----EpvSaLDvSiqaqIlnLL~~lq~---- 157 (268)
T COG4608 101 EFLYRYPHE--LSGGQRQRI-------GIA--RALALNPK---LIVAD-----EPVSALDVSVQAQILNLLKDLQE---- 157 (268)
T ss_pred HHHHCCCCC--CCCHHHHHH-------HHH--HHHHHCCC---EEEEC-----CCHHHCCHHHHHHHHHHHHHHHH----
T ss_conf 786338830--373133569-------999--99850986---79743-----72110124679999999999999----
Q ss_pred CCCCCCCCCEEEHHHCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCC---CCCCCCCCHHHHHHHHHHHHC
Q ss_conf 00012565312100105001568315389999999881980999816746887---688732078899999999984
Q gi|254780826|r 372 EKGVLKPEATFSACFGAPFMPRDPVQYGNILKDYIVKYCVDCWLVNTGWTAGS---YGEGYRMPLSVTRALLKAIFD 445 (509)
Q Consensus 372 e~g~~ep~~tfs~cFg~PF~~~~p~~ya~ll~~~i~~~~~~vyLvNTGw~Gg~---~g~G~Ri~l~~Tr~ii~ai~~ 445 (509)
|.|.+- =|+.....+ +.-..+ ++-.+-.|-+=.- .-+=..-.-+|||+++.|+-.
T Consensus 158 ~~~lt~-----------lFIsHDl~v-v~~isd-------ri~Vmy~G~iVE~g~~~~~~~~p~HpYT~~Ll~a~p~ 215 (268)
T COG4608 158 ELGLTY-----------LFISHDLSV-VRYISD-------RIAVMYLGKIVEIGPTEEVFSNPLHPYTKALLSAVPV 215 (268)
T ss_pred HHCCEE-----------EEEEEEHHH-HHHHCC-------CEEEEECCCEEEECCHHHHHHCCCCHHHHHHHHHCCC
T ss_conf 859758-----------999877776-664044-------4788754745676577777617799899999972786
No 498
>PRK12338 hypothetical protein; Provisional
Probab=55.44 E-value=4.2 Score=20.69 Aligned_cols=20 Identities=40% Similarity=0.491 Sum_probs=16.3
Q ss_pred EEEEEEECCCCCCCCCCCCC
Q ss_conf 02799833543111222478
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSASV 238 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~d~ 238 (509)
-+.|+=|-||+||+||++.=
T Consensus 5 liILiGGtSGvGKSTlAseL 24 (320)
T PRK12338 5 YVILIGSASGIGKSTIASEV 24 (320)
T ss_pred EEEEEECCCCCCHHHHHHHH
T ss_conf 79997068887688899999
No 499
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=54.95 E-value=3.9 Score=20.88 Aligned_cols=17 Identities=53% Similarity=0.708 Sum_probs=0.0
Q ss_pred EEEEEECCCCCCCCCCC
Q ss_conf 27998335431112224
Q gi|254780826|r 220 VALFFGLSGTGKTTLSA 236 (509)
Q Consensus 220 ~alfFGLSGTGKTTLS~ 236 (509)
+.+|.|..|.||||+++
T Consensus 1 ~i~~~~~kGvGKTT~a~ 17 (99)
T cd01983 1 VIVVTGKGGVGKTTLAA 17 (99)
T ss_pred CEEEECCCCCCHHHHHH
T ss_conf 98985899776899999
No 500
>KOG0780 consensus
Probab=54.55 E-value=8.6 Score=18.62 Aligned_cols=20 Identities=55% Similarity=0.871 Sum_probs=0.0
Q ss_pred CCCCCEEEEEEECCCCCCCC
Q ss_conf 77787027998335431112
Q gi|254780826|r 214 DKEKEDVALFFGLSGTGKTT 233 (509)
Q Consensus 214 ~~~~~d~alfFGLSGTGKTT 233 (509)
.+.+-.|.+|.||-|.||||
T Consensus 97 ~K~kpsVimfVGLqG~GKTT 116 (483)
T KOG0780 97 KKGKPSVIMFVGLQGSGKTT 116 (483)
T ss_pred CCCCCCEEEEEECCCCCCCE
T ss_conf 56897089998305788630
Done!