HHsearch alignment for GI: 254780826 and conserved domain: pfam05496
>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=92.16 E-value=0.051 Score=33.35 Aligned_cols=18 Identities=50% Similarity=0.805 Sum_probs=15.4
Q ss_pred EEEEEEECCCCCCCCCCC
Q ss_conf 027998335431112224
Q gi|254780826|r 219 DVALFFGLSGTGKTTLSA 236 (509)
Q Consensus 219 d~alfFGLSGTGKTTLS~ 236 (509)
T Consensus 51 ~h~lf~GPPG~GKTTlAr 68 (234)
T pfam05496 51 DHVLLYGPPGLGKTTLAN 68 (234)
T ss_pred CEEEEECCCCCCHHHHHH
T ss_conf 627887899998889999