RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780826|ref|YP_003065239.1| phosphoenolpyruvate carboxykinase [Candidatus Liberibacter asiaticus str. psy62] (509 letters) >gnl|CDD|181788 PRK09344, PRK09344, phosphoenolpyruvate carboxykinase; Provisional. Length = 526 Score = 792 bits (2047), Expect = 0.0 Identities = 267/505 (52%), Positives = 345/505 (68%), Gaps = 3/505 (0%) Query: 1 MEKFDLEGSSRVYRNLSTSRLYEESIRREKTILTCDGALRALTGQHTGRSAFDKFIVRDS 60 +E + + S V+ NLS + LYEE++RR + +LT GAL TG+ TGRS DKFIVRD Sbjct: 8 LEAYGITNLSNVHYNLSYAELYEEALRRGEGVLTDTGALAVDTGKFTGRSPKDKFIVRDP 67 Query: 61 HTENDVFWEN-NKYISPADFDTLKADMLDYIKDKDLFLQDLVACPHTKNAISVCVVTQYA 119 TE+ ++W + NK ISP FD LK +L Y+ KDLF+ D A + + V V+T+ A Sbjct: 68 STEDTIWWGDDNKPISPEKFDALKQKVLAYLSGKDLFVVDGFAGADPEYRLPVRVITELA 127 Query: 120 WHSLFIRNLLKHKEDLGAVPNMMSLQVVVLPDFSADPNRHGCCSETIIAVDLTAGLILIG 179 WH+LF+RNL + ++ P F ADP R G SET IA++ T ++LIG Sbjct: 128 WHALFVRNLFIRPSEEELASFEPDFTIINAPKFKADPERDGTNSETFIAINFTERIVLIG 187 Query: 180 GTSYAGEIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSASVD 239 GT YAGE+KKS+F+ +N++ P +G++PMHCS N+ +E DVALFFGLSGTGKTTLSA + Sbjct: 188 GTDYAGEMKKSIFSVMNYLLPLKGVLPMHCSANVGEE-GDVALFFGLSGTGKTTLSADPN 246 Query: 240 RFLIGDDEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSASCRFGTVLENVVVDECGIP 299 R LIGDDEHGW GVFNFEGGCYAK+INLS+E EPEI+ A RFG VLENVVVDE G Sbjct: 247 RKLIGDDEHGWDDGGVFNFEGGCYAKTINLSEEAEPEIYDA-IRFGAVLENVVVDEDGTV 305 Query: 300 NFKDSSVTENTRAAYPLNFIHNHAPQSIGKHPKHVIMLAADAFGVLPPVAYLNPEKAVYY 359 +F D S+TENTRAAYP+ I N S HPK++I L ADAFGVLPPV+ L PE+A+Y+ Sbjct: 306 DFDDGSLTENTRAAYPIEHIPNAVKPSRAGHPKNIIFLTADAFGVLPPVSKLTPEQAMYH 365 Query: 360 FLSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNILKDYIVKYCVDCWLVNTG 419 FLSGYTAKVAGTE+GV +P+ TFS CFGAPF+P P Y +L + I + +LVNTG Sbjct: 366 FLSGYTAKVAGTERGVTEPQPTFSTCFGAPFLPLHPTVYAELLGERIKAHGAKVYLVNTG 425 Query: 420 WTAGSYGEGYRMPLSVTRALLKAIFDNSIKSVPYRVDENFGFSVPLEVKGVDRKLLNPRD 479 WT G YG G R+ + TRA++ AI D S+ + D FG +VP V GVD ++L+PR+ Sbjct: 426 WTGGPYGTGKRISIKYTRAIINAILDGSLDNAETTTDPIFGLAVPTSVPGVDSEILDPRN 485 Query: 480 SWNDVEAYDQKMRELLLMFENNAEK 504 +W D AYD+K ++L +F N EK Sbjct: 486 TWADKAAYDEKAKKLARLFRENFEK 510 >gnl|CDD|185549 PTZ00311, PTZ00311, phosphoenolpyruvate carboxykinase; Provisional. Length = 561 Score = 575 bits (1484), Expect = e-165 Identities = 237/511 (46%), Positives = 325/511 (63%), Gaps = 11/511 (2%) Query: 7 EGSSRVYRNLSTSRLYEESIRREK-TILTCDGALRALTGQHTGRSAFDKFIVRDSHTEND 65 ++ ++RNL+ LYE +++ EK T +T GAL +G TGRS DK IV++ +E+D Sbjct: 39 LHNTTIHRNLTVPELYEHALKYEKNTSITSTGALCVYSGAKTGRSPKDKRIVKEDSSEDD 98 Query: 66 VFWEN-NKYISPADFDTLKADMLDYIKDKD-LFLQDLVACPHTKNAISVCVVTQYAWHSL 123 ++W N +S F+ K +DY+ ++ LF+ D A K + V V+T A+H+L Sbjct: 99 IWWGKVNIPLSEESFEINKKRAIDYLNTRERLFVVDGYAGWDPKYRLKVRVITTRAYHAL 158 Query: 124 FIRNLL--KHKEDLGAVPNMMSLQVVVL--PDFSADPNRHGCCSETIIAVDLTAGLILIG 179 F+RN+L E+L + +F A+ G SET +A++ ++I Sbjct: 159 FMRNMLIRPTNEELKKFGEDFVPDFTIYNAGEFKANRLIEGVTSETSVALNFKRREMVIL 218 Query: 180 GTSYAGEIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSASVD 239 GT YAGE+KK + T + ++ P++G++P+H S N+ K K DV LFFGLSGTGKTTLSA + Sbjct: 219 GTQYAGEMKKGILTVMMYLMPKQGVLPLHSSANVGK-KGDVTLFFGLSGTGKTTLSADPN 277 Query: 240 RFLIGDDEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSASCRFGTVLENVVVD-ECGI 298 R LIGDDEH W+ +GVFN EGGCYAK I+LSKETEPEI++A RFG VLENVV+D Sbjct: 278 RKLIGDDEHVWTDDGVFNIEGGCYAKCIDLSKETEPEIYNA-IRFGAVLENVVLDKVTRE 336 Query: 299 PNFKDSSVTENTRAAYPLNFIHNHAPQSIGKHPKHVIMLAADAFGVLPPVAYLNPEKAVY 358 +F D S+TENTR AYPL I N ++G HPK++I L DAFGVLPPV+ L PE+A+Y Sbjct: 337 VDFNDISITENTRCAYPLEHIPNAKIPAVGGHPKNIIFLTCDAFGVLPPVSKLTPEQAMY 396 Query: 359 YFLSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNILKDYIVKYCVDCWLVNT 418 +F+SGYTAKVAGTE GV +P ATFSACFG PF+ P Y +L + I K+ WL+NT Sbjct: 397 HFISGYTAKVAGTEVGVKEPTATFSACFGEPFLVLHPTVYAEMLAEKIKKHNTRVWLLNT 456 Query: 419 GWTAGSYGE-GYRMPLSVTRALLKAIFDNSIKSVPYRVDENFGFSVPLEVKGVDRKLLNP 477 GW GSYG G RMPL TRA++ AI D +K Y FG +P GV +LL+P Sbjct: 457 GWIGGSYGSGGKRMPLKYTRAIIDAIHDGELKKAEYEKFPIFGLQIPKSCAGVPSELLDP 516 Query: 478 RDSWNDVEAYDQKMRELLLMFENNAEKKQIK 508 R++W D A+D++++EL F+ N +K K Sbjct: 517 RNAWKDKAAFDKQLKELAAKFQKNFKKYADK 547 >gnl|CDD|161774 TIGR00224, pckA, phosphoenolpyruvate carboxykinase (ATP). Involved in the gluconeogenesis pathway. It converts oxaloacetic acid to phosphoenolpyruvate using ATP. Enzyme is a monomer. The reaction is also catalysed by phosphoenolpyruvate carboxykinase (GTP) (EC 4.1.1.32) using GTP instead of ATP, described in PROSITE:PDOC00421. Length = 532 Score = 519 bits (1337), Expect = e-147 Identities = 222/505 (43%), Positives = 306/505 (60%), Gaps = 18/505 (3%) Query: 12 VYRNLSTSRLYEESIRR-----EKTILTCDGALRALTGQHTGRSAFDKFIVRDSHTENDV 66 + N S ++LYEE ++ EK +LT GA+ TG TGRS DK+IV D T++ + Sbjct: 21 IVYNPSYAQLYEEELKPSLTGYEKGVLTSTGAVAVDTGIFTGRSPKDKYIVEDETTKDTI 80 Query: 67 FW-ENNKYISPADFDTLKADMLDYIKDKDLFLQDLVACPHTKNAISVCVVTQYAWHSLFI 125 +W NK +S + LK + + K LF+ D K +SV VVT+ AW + F+ Sbjct: 81 WWGPVNKPLSEETWQHLKGLVTRQLSRKRLFVVDAFCGADPKYRLSVRVVTEVAWQAHFV 140 Query: 126 RNLL--KHKEDLGAV-PNMMSLQVVVLPDFSADPNRHGCCSETIIAVDLTAGLILIGGTS 182 +N+ +E+L P+ + + + G SE +A +LT + LIGGT Sbjct: 141 KNMFIRPTEEELAGFEPDFTVMNGAKFTN--PNWKEQGLNSENFVAFNLTERMQLIGGTW 198 Query: 183 YAGEIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSASVDRFL 242 Y GE+KK +F+ +N++ P +GI+ MHCS N+ EK DVALFFGLSGTGKTTLS R L Sbjct: 199 YGGEMKKGMFSMMNYLLPLKGILSMHCSANVG-EKGDVALFFGLSGTGKTTLSTDPKRRL 257 Query: 243 IGDDEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSASCRFGTVLENVVVDECGIPNFK 302 IGDDEHGW +GVFNFEGGCYAK+I+LS+E EPEI++A R +LENVVV E G +F Sbjct: 258 IGDDEHGWDDDGVFNFEGGCYAKTIHLSEEKEPEIYNA-IRRDALLENVVVREDGTVDFD 316 Query: 303 DSSVTENTRAAYPLNFIHN-HAPQSIGKHPKHVIMLAADAFGVLPPVAYLNPEKAVYYFL 361 D S TENTR +YP+ I N P S H VI L ADAFGVLPPV+ L PE+ +Y+FL Sbjct: 317 DGSKTENTRVSYPIYHIDNIVKPVSAAGHATKVIFLTADAFGVLPPVSKLTPEQTMYHFL 376 Query: 362 SGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNILKDYIVKYCVDCWLVNTGWT 421 SG+TAK+AGTE+G+ +P TFSACFGA F+ P QY +L + +LVNTGW Sbjct: 377 SGFTAKLAGTERGITEPTPTFSACFGAAFLSLHPTQYAEVLVKRMQAAGAQAYLVNTGWN 436 Query: 422 AGSYGEGYRMPLSVTRALLKAIFDNSIKSVPYRVDENFGFSVPLEVKGVDRKLLNPRDSW 481 G G R+ + TRA++ AI D S+++ F ++P E+ GVD K+L+PR+++ Sbjct: 437 ----GTGKRISIKDTRAIIDAILDGSLENAEMFTLPIFNLAIPTELPGVDTKILDPRNTY 492 Query: 482 NDVEAYDQKMRELLLMFENNAEKKQ 506 E + +K L +F +N +K Sbjct: 493 ASKEQWQEKAETLANLFVDNFKKYA 517 >gnl|CDD|178207 PLN02597, PLN02597, phosphoenolpyruvate carboxykinase [ATP]. Length = 555 Score = 508 bits (1309), Expect = e-144 Identities = 228/508 (44%), Positives = 318/508 (62%), Gaps = 25/508 (4%) Query: 12 VYRNLSTSRLYEESIRREK-TILTCDGALRALTGQHTGRSAFDKFIVRDSHTENDVFWEN 70 V NLS + LYE++I+ EK + +T GAL L+G TGRS DK +VRD TE++++W Sbjct: 35 VLYNLSPAELYEQAIKYEKGSFITSTGALATLSGAKTGRSPKDKRVVRDETTEDELWWGK 94 Query: 71 ---NKYISPADFDTLKADMLDYIKDKD-LFLQDLVACPHTKNAISVCVVTQYAWHSLFIR 126 N + F + +DY+ D +F+ D +N I V +V+ A+HSLF+ Sbjct: 95 GSPNIEMDEETFLVNRERAVDYLNSLDKVFVNDQFLNWDPENRIKVRIVSARAYHSLFMH 154 Query: 127 NLLKHKEDLGAVPNMMSLQVVVLPDFS--------ADPNRHGCCSETIIAVDLTAGLILI 178 N+ P L+ PDF+ + H S T I ++L ++I Sbjct: 155 NMCIR-------PTPEELEDFGTPDFTIYNAGQFPCNRYTHYMTSSTSIDLNLKRKEMVI 207 Query: 179 GGTSYAGEIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSASV 238 GT YAGE+KK +F+ ++++ P RGI+ +H NM K+ DVALFFGLSGTGKTTLS Sbjct: 208 LGTQYAGEMKKGLFSLMHYLMPMRGILSLHSGCNMGKD-GDVALFFGLSGTGKTTLSTDP 266 Query: 239 DRFLIGDDEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSASCRFGTVLENVVVDECGI 298 +R+LIGDDEH WS GV N EGGCYAK I+LS+E EP+I++A +FGTVLENVV DE Sbjct: 267 NRYLIGDDEHCWSDNGVSNIEGGCYAKCIDLSEEKEPDIWNA-IKFGTVLENVVFDEHTR 325 Query: 299 P-NFKDSSVTENTRAAYPLNFIHN-HAPQSIGKHPKHVIMLAADAFGVLPPVAYLNPEKA 356 ++ D SVTENTRA+YP+ +I N P +G HPK+VI+LA DAFGVLPPV+ L + Sbjct: 326 EVDYSDKSVTENTRASYPIEYIPNAKIPC-VGPHPKNVILLACDAFGVLPPVSKLTLAQT 384 Query: 357 VYYFLSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNILKDYIVKYCVDCWLV 416 +Y+F+SGYTA VAGTE G+ +P ATFSACFGA F+ P +Y +L + + K+ WLV Sbjct: 385 MYHFISGYTALVAGTEDGIKEPTATFSACFGAAFIMLHPTKYAAMLAEKMQKHGATAWLV 444 Query: 417 NTGWTAGSYGEGYRMPLSVTRALLKAIFDNSIKSVPYRVDENFGFSVPLEVKGVDRKLLN 476 NTGW+ GSYG G RM L+ TR ++ AI S+ + Y FG VP E++GV ++L+ Sbjct: 445 NTGWSGGSYGVGKRMSLAYTRKIIDAIHSGSLLNAEYVKTPIFGLEVPTEIEGVPSEILD 504 Query: 477 PRDSWNDVEAYDQKMRELLLMFENNAEK 504 P ++W+D +AYD+ + +L +F+ N E Sbjct: 505 PENTWSDKKAYDETLNKLAGLFKKNFEV 532 >gnl|CDD|183331 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional. Length = 269 Score = 39.7 bits (93), Expect = 0.002 Identities = 50/203 (24%), Positives = 84/203 (41%), Gaps = 36/203 (17%) Query: 202 RGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEGG 261 RG + +I++ + + G SG GKTTL LIG E +F+ E Sbjct: 17 RGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLR-----LIGGQIAPDHGEILFDGE-- 69 Query: 262 CYAKSINLSKETEPEIFSASCRFGTVLENVVVDECGIPNFKDSSVTENTRAAYPLNFIHN 321 N+ + +++ R + ++ + F D +V +N AYPL H Sbjct: 70 ------NIPAMSRSRLYTVRKRMSMLFQSGAL-------FTDMNVFDNV--AYPLRE-HT 113 Query: 322 HAPQSIGKHPKHVIMLAADAFGVLPPVAYLNPEKAVYYFLSGYTAKVAGTEKGV-LKPEA 380 P + +M+ +A G L A L P + LSG A+ A + + L+P+ Sbjct: 114 QLPAPL---LHSTVMMKLEAVG-LRGAAKLMPSE-----LSGGMARRAALARAIALEPDL 164 Query: 381 TFSACFGAPFMPRDPVQYGNILK 403 F PF+ +DP+ G ++K Sbjct: 165 IM---FDEPFVGQDPITMGVLVK 184 >gnl|CDD|172963 PRK14490, PRK14490, putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional. Length = 369 Score = 33.5 bits (77), Expect = 0.14 Identities = 15/37 (40%), Positives = 20/37 (54%) Query: 223 FFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFE 259 F G SG+GKTTL ++ R L G+ K G F+ Sbjct: 10 FCGYSGSGKTTLITALVRRLSERFSVGYYKHGCHRFD 46 >gnl|CDD|184595 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional. Length = 250 Score = 33.0 bits (75), Expect = 0.18 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 5/66 (7%) Query: 195 LNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEG 254 LN F + I+ ++N+D K V G SG GK+T +++R + D G+ EG Sbjct: 9 LNTYFDDAHILK---NVNLDIPKNSVTALIGPSGCGKSTFIRTLNR--MNDLIPGFRHEG 63 Query: 255 VFNFEG 260 +G Sbjct: 64 HIYLDG 69 >gnl|CDD|163523 TIGR03811, tyr_de_CO2_Ent, tyrosine decarboxylase, Enterococcus type. This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis. Length = 608 Score = 32.1 bits (73), Expect = 0.33 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 8/45 (17%) Query: 48 GRSAF----DKFI----VRDSHTENDVFWENNKYISPADFDTLKA 84 GR+ F D FI +++ H E VF E +YIS ++ KA Sbjct: 326 GRAIFLDEDDNFIPYDDLQEVHAEYGVFTEKKEYISREVYNAYKA 370 >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional. Length = 250 Score = 32.2 bits (73), Expect = 0.36 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%) Query: 210 SINMDKEKEDVALFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEG 260 ++ M K + G SG GKTTL S++R + D G+ EG F+G Sbjct: 21 NVTMKIFKNQITAIIGPSGCGKTTLLRSINR--MNDHIPGFRVEGKIYFKG 69 >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. Length = 571 Score = 31.6 bits (72), Expect = 0.55 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%) Query: 192 FTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSASVDRF 241 F + +P R P SI++ E + G SG+GK+TL + RF Sbjct: 333 FRNVTFRYPGRDR-PALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRF 381 >gnl|CDD|184589 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional. Length = 268 Score = 31.1 bits (70), Expect = 0.62 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 2/50 (4%) Query: 211 INMDKEKEDVALFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEG 260 I+MD EK V G SG GK+T S++R + D EG +EG Sbjct: 40 ISMDIEKHAVTALIGPSGCGKSTFLRSINR--MNDLIPSARSEGEILYEG 87 >gnl|CDD|162133 TIGR00959, ffh, signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. Length = 428 Score = 31.1 bits (71), Expect = 0.66 Identities = 12/27 (44%), Positives = 16/27 (59%) Query: 210 SINMDKEKEDVALFFGLSGTGKTTLSA 236 S+N+ K+ V L GL G+GKTT Sbjct: 91 SLNLAKKPPTVILMVGLQGSGKTTTCG 117 >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. Length = 708 Score = 30.9 bits (70), Expect = 0.73 Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 15/88 (17%) Query: 211 INMDKEKEDVALFFGLSGTGKTTLSASVDRFLIG--DDEHGWSKEGVF---NFEGGCYAK 265 I++ + G+SG+GK+TL+ + L+G G F + + + Sbjct: 493 ISLTIKMNSKTTIVGMSGSGKSTLA----KLLVGFFQARSGEILLNGFSLKDIDRHTLRQ 548 Query: 266 SINLSKETEPEIFSASCRFGTVLENVVV 293 IN + EP IFS G++LEN+++ Sbjct: 549 FINYLPQ-EPYIFS-----GSILENLLL 570 >gnl|CDD|130492 TIGR01425, SRP54_euk, signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. Length = 429 Score = 30.6 bits (69), Expect = 0.91 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 5/47 (10%) Query: 187 IKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTT 233 I+ +VF L ++ + P + K K++V +F GL G+GKTT Sbjct: 74 IQHAVFKELCNL-----VDPGVEAFTPKKGKQNVIMFVGLQGSGKTT 115 >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional. Length = 262 Score = 30.8 bits (69), Expect = 0.99 Identities = 40/170 (23%), Positives = 66/170 (38%), Gaps = 26/170 (15%) Query: 210 SINMDKEKEDVALFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNF--EGGCYAKSI 267 +++++ ++ G SG+GK+TL + + GD G E + G A+ I Sbjct: 22 AVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDI 81 Query: 268 NLSKETEPEIFSASCRFG-----TVLENVVVDECGIPNFKDSSVT-----ENTRAAYPL- 316 S+ IF +F +VLENV++ G F + + + RA L Sbjct: 82 RKSRANTGYIFQ---QFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALT 138 Query: 317 -----NFIHNHAPQSIGKHPKHV-----IMLAADAFGVLPPVAYLNPEKA 356 +F H G + V +M A P+A L+PE A Sbjct: 139 RVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESA 188 >gnl|CDD|161686 TIGR00064, ftsY, signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. Length = 272 Score = 30.3 bits (69), Expect = 1.1 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 9/57 (15%) Query: 187 IKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSASVDRFLI 243 +K+ + L E +++ K +V LF G++G GKTT A + L Sbjct: 50 LKEYLKEILKETDLEL---------IVEENKPNVILFVGVNGVGKTTTIAKLANKLK 97 >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional. Length = 329 Score = 30.5 bits (68), Expect = 1.1 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 8/75 (10%) Query: 186 EIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSASVDRFLIGD 245 EI+ F Y+N R +H +N+D ++ V F G SG GK+T ++++ + D Sbjct: 82 EIRNFNFWYMN-----RTKHVLH-DLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQ--LND 133 Query: 246 DEHGWSKEGVFNFEG 260 G S EG F G Sbjct: 134 LIEGTSHEGEIYFLG 148 >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional. Length = 250 Score = 30.4 bits (69), Expect = 1.2 Identities = 12/31 (38%), Positives = 18/31 (58%) Query: 210 SINMDKEKEDVALFFGLSGTGKTTLSASVDR 240 IN+D E+ V G SG GK+T +++R Sbjct: 21 KINLDIEENQVTALIGPSGCGKSTFLRTLNR 51 >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional. Length = 261 Score = 30.0 bits (67), Expect = 1.5 Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 16/76 (21%) Query: 199 FPERGIMPMHCSI--------------NMDKEKEDVALFFGLSGTGKTTLSASVDRFLIG 244 + M C + ++ K ++ F G SG GK+T+ S++R + Sbjct: 1 MVSEAPIVMDCKLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNR--MN 58 Query: 245 DDEHGWSKEGVFNFEG 260 D G+ EG +F G Sbjct: 59 DLVKGFRFEGHVHFLG 74 >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature. Length = 363 Score = 29.8 bits (67), Expect = 1.5 Identities = 9/33 (27%), Positives = 19/33 (57%) Query: 210 SINMDKEKEDVALFFGLSGTGKTTLSASVDRFL 242 ++ K ++ + GLSG+GK+T ++R + Sbjct: 11 DADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLI 43 >gnl|CDD|184937 PRK14974, PRK14974, cell division protein FtsY; Provisional. Length = 336 Score = 29.9 bits (68), Expect = 1.5 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 1/63 (1%) Query: 180 GTSYAGEIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSASVD 239 G +K ++ L + + + I K K V +F G++GTGKTT A + Sbjct: 103 GEDVEEIVKNALKEALLEVLSVGDLFDLIEEIK-SKGKPVVIVFVGVNGTGKTTTIAKLA 161 Query: 240 RFL 242 +L Sbjct: 162 YYL 164 >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. Length = 243 Score = 30.0 bits (68), Expect = 1.6 Identities = 24/103 (23%), Positives = 37/103 (35%), Gaps = 25/103 (24%) Query: 211 INMDKEKEDVALFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEGGCYAKSINLS 270 IN++ + G SG GK+TL ++R L+ G EG +++ Sbjct: 21 INLNINPGEFVAIIGPSGAGKSTLLRCINR-LVEPS------SGSILLEGT------DIT 67 Query: 271 KETEPEIFSASCRFG------------TVLENVVVDECGIPNF 301 K ++ R G TVLENV+ G Sbjct: 68 KLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPT 110 >gnl|CDD|184919 PRK14955, PRK14955, DNA polymerase III subunits gamma and tau; Provisional. Length = 397 Score = 29.9 bits (67), Expect = 1.8 Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 9/74 (12%) Query: 84 ADMLDYIKDKDLF-LQDLVACPHTKNAISVCVVTQYAWHS-----LFIRNLLKHKEDLGA 137 A++L+YI D+ F + D VA +A+++ V Q+ + F+ L++H + Sbjct: 251 AELLNYIDDEHFFAVTDAVA---DGDAVAMLDVAQFVIRNGYDEQDFLEKLIEHLRNFLV 307 Query: 138 VPNMMSLQVVVLPD 151 V N+ S ++V PD Sbjct: 308 VHNLRSTRLVERPD 321 >gnl|CDD|178847 PRK00080, ruvB, Holliday junction DNA helicase RuvB; Reviewed. Length = 328 Score = 29.7 bits (68), Expect = 2.0 Identities = 8/14 (57%), Positives = 10/14 (71%) Query: 222 LFFGLSGTGKTTLS 235 L +G G GKTTL+ Sbjct: 55 LLYGPPGLGKTTLA 68 >gnl|CDD|128665 smart00382, AAA, ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 Score = 29.3 bits (65), Expect = 2.4 Identities = 8/13 (61%), Positives = 9/13 (69%) Query: 222 LFFGLSGTGKTTL 234 L G G+GKTTL Sbjct: 6 LIVGPPGSGKTTL 18 >gnl|CDD|130045 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. Length = 247 Score = 29.2 bits (66), Expect = 2.8 Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 3/60 (5%) Query: 211 INMDKEKEDVALFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEG-GCYAKSINL 269 IN+D K V G SG GK+TL S++R + D G EG F+G Y K I++ Sbjct: 20 INLDIPKNQVTALIGPSGCGKSTLLRSLNR--MNDLVPGVRIEGKVLFDGQDIYDKKIDV 77 >gnl|CDD|180719 PRK06835, PRK06835, DNA replication protein DnaC; Validated. Length = 329 Score = 29.1 bits (66), Expect = 2.9 Identities = 14/24 (58%), Positives = 18/24 (75%), Gaps = 1/24 (4%) Query: 212 NMDKEKEDVALFFGLSGTGKTTLS 235 N DK E++ LF+G +GTGKT LS Sbjct: 178 NFDKNNENL-LFYGNTGTGKTFLS 200 >gnl|CDD|177953 PLN02319, PLN02319, aminomethyltransferase. Length = 404 Score = 28.9 bits (65), Expect = 3.1 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Query: 411 VDCWLVNTGWTAGSYGEGYRMPLSVTRALLKAIFDNSIKSV 451 DC+L TG+T G G +P L KA+ + S V Sbjct: 215 ADCFLTRTGYT-GEDGFEISVPSEHAVDLAKALLEKSEGKV 254 >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional. Length = 260 Score = 28.8 bits (65), Expect = 3.4 Identities = 13/25 (52%), Positives = 16/25 (64%) Query: 210 SINMDKEKEDVALFFGLSGTGKTTL 234 +IN+D K V F G SG GK+TL Sbjct: 31 NINLDIAKNQVTAFIGPSGCGKSTL 55 >gnl|CDD|180120 PRK05506, PRK05506, bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional. Length = 632 Score = 28.7 bits (65), Expect = 3.7 Identities = 11/23 (47%), Positives = 16/23 (69%) Query: 220 VALFFGLSGTGKTTLSASVDRFL 242 F GLSG+GK+T++ V+R L Sbjct: 462 TVWFTGLSGSGKSTIANLVERRL 484 >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional. Length = 252 Score = 28.8 bits (64), Expect = 3.8 Identities = 11/32 (34%), Positives = 19/32 (59%) Query: 209 CSINMDKEKEDVALFFGLSGTGKTTLSASVDR 240 ++N+D ++ V G SG GKTT +++R Sbjct: 21 KNVNLDVQRGTVNALIGPSGCGKTTFLRAINR 52 >gnl|CDD|179157 PRK00889, PRK00889, adenylylsulfate kinase; Provisional. Length = 175 Score = 28.4 bits (64), Expect = 3.8 Identities = 10/21 (47%), Positives = 14/21 (66%) Query: 223 FFGLSGTGKTTLSASVDRFLI 243 F GLSG GKTT++ ++ L Sbjct: 9 FTGLSGAGKTTIARALAEKLR 29 >gnl|CDD|179026 PRK00440, rfc, replication factor C small subunit; Reviewed. Length = 319 Score = 28.7 bits (65), Expect = 3.8 Identities = 13/25 (52%), Positives = 17/25 (68%) Query: 222 LFFGLSGTGKTTLSASVDRFLIGDD 246 LF G GTGKTT + ++ R L G+D Sbjct: 42 LFAGPPGTGKTTAALALARELYGED 66 >gnl|CDD|179661 PRK03846, PRK03846, adenylylsulfate kinase; Provisional. Length = 198 Score = 28.4 bits (64), Expect = 4.0 Identities = 9/20 (45%), Positives = 16/20 (80%) Query: 223 FFGLSGTGKTTLSASVDRFL 242 F GLSG+GK+T++ +++ L Sbjct: 29 FTGLSGSGKSTVAGALEEAL 48 >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional. Length = 252 Score = 28.6 bits (64), Expect = 4.1 Identities = 11/31 (35%), Positives = 20/31 (64%) Query: 210 SINMDKEKEDVALFFGLSGTGKTTLSASVDR 240 S+++D ++ G SG+GK+TL S++R Sbjct: 23 SVSLDFYPNEITALIGPSGSGKSTLLRSINR 53 >gnl|CDD|162209 TIGR01116, ATPase-IIA1_Ca, sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522. Length = 917 Score = 27.8 bits (62), Expect = 6.0 Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 6/46 (13%) Query: 393 RDPVQ-----YGNILKDYIVKYCVDCWLVNTG-WTAGSYGEGYRMP 432 P+Q +G +L I C+ W++N G + + G G+ Sbjct: 190 DTPLQKKLDEFGELLSKVIGLICILVWVINIGHFNDPALGGGWIQG 235 >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional. Length = 272 Score = 27.7 bits (62), Expect = 6.6 Identities = 12/26 (46%), Positives = 14/26 (53%) Query: 209 CSINMDKEKEDVALFFGLSGTGKTTL 234 I+M K V F G SG GK+TL Sbjct: 42 FDISMRIPKNRVTAFIGPSGCGKSTL 67 >gnl|CDD|179118 PRK00771, PRK00771, signal recognition particle protein Srp54; Provisional. Length = 437 Score = 27.9 bits (63), Expect = 6.9 Identities = 10/32 (31%), Positives = 16/32 (50%) Query: 211 INMDKEKEDVALFFGLSGTGKTTLSASVDRFL 242 + K + GL G+GKTT +A + R+ Sbjct: 88 PLVLPLKPQTIMLVGLQGSGKTTTAAKLARYF 119 >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional. Length = 255 Score = 27.7 bits (62), Expect = 7.1 Identities = 14/40 (35%), Positives = 23/40 (57%) Query: 195 LNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTL 234 ++H++ + G P IN+ E ++ + G SG GKTTL Sbjct: 4 ISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTL 43 >gnl|CDD|183986 PRK13342, PRK13342, recombination factor protein RarA; Reviewed. Length = 413 Score = 27.7 bits (63), Expect = 7.1 Identities = 8/13 (61%), Positives = 10/13 (76%) Query: 222 LFFGLSGTGKTTL 234 + +G GTGKTTL Sbjct: 40 ILWGPPGTGKTTL 52 >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional. Length = 258 Score = 27.8 bits (62), Expect = 7.4 Identities = 11/30 (36%), Positives = 19/30 (63%) Query: 211 INMDKEKEDVALFFGLSGTGKTTLSASVDR 240 +N++ E V F G SG GK+T+ +++R Sbjct: 23 VNLNIEPRSVTAFIGPSGCGKSTVLRTLNR 52 >gnl|CDD|163223 TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. Length = 852 Score = 27.6 bits (62), Expect = 7.6 Identities = 11/27 (40%), Positives = 17/27 (62%) Query: 222 LFFGLSGTGKTTLSASVDRFLIGDDEH 248 LF G +G GKT L+ ++ FL D++ Sbjct: 599 LFLGPTGVGKTELAKALAEFLFDDEDA 625 >gnl|CDD|132456 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. Length = 382 Score = 27.8 bits (62), Expect = 7.6 Identities = 10/29 (34%), Positives = 21/29 (72%) Query: 212 NMDKEKEDVALFFGLSGTGKTTLSASVDR 240 ++D E+ ++ + GLSG+GK++L +V+ Sbjct: 44 SLDIEEGEICVLMGLSGSGKSSLLRAVNG 72 >gnl|CDD|182793 PRK10867, PRK10867, signal recognition particle protein; Provisional. Length = 433 Score = 27.7 bits (63), Expect = 7.9 Identities = 10/33 (30%), Positives = 18/33 (54%) Query: 210 SINMDKEKEDVALFFGLSGTGKTTLSASVDRFL 242 +N+ + V + GL G GKTT + + ++L Sbjct: 92 ELNLAAKPPTVIMMVGLQGAGKTTTAGKLAKYL 124 >gnl|CDD|181233 PRK08116, PRK08116, hypothetical protein; Validated. Length = 268 Score = 27.7 bits (62), Expect = 8.1 Identities = 11/22 (50%), Positives = 14/22 (63%) Query: 222 LFFGLSGTGKTTLSASVDRFLI 243 L +G GTGKT L+A + LI Sbjct: 118 LLWGSVGTGKTYLAACIANELI 139 >gnl|CDD|162839 TIGR02397, dnaX_nterm, DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis. Length = 355 Score = 27.5 bits (62), Expect = 8.5 Identities = 8/14 (57%), Positives = 11/14 (78%) Query: 222 LFFGLSGTGKTTLS 235 LF G GTGKT+++ Sbjct: 40 LFSGPRGTGKTSIA 53 >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 Score = 27.3 bits (61), Expect = 8.7 Identities = 10/25 (40%), Positives = 16/25 (64%) Query: 210 SINMDKEKEDVALFFGLSGTGKTTL 234 IN++ ++ + G SG+GKTTL Sbjct: 23 DINLEINPGEIVILTGPSGSGKTTL 47 >gnl|CDD|177823 PLN02165, PLN02165, adenylate isopentenyltransferase. Length = 334 Score = 27.5 bits (61), Expect = 9.0 Identities = 11/36 (30%), Positives = 18/36 (50%) Query: 200 PERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLS 235 P R ++ M K+ V + G +G+GK+ LS Sbjct: 25 PPRSVVTMTSVAMEQNCKDKVVVIMGATGSGKSRLS 60 >gnl|CDD|129547 TIGR00455, apsK, adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment. Length = 184 Score = 27.4 bits (61), Expect = 9.3 Identities = 9/28 (32%), Positives = 18/28 (64%) Query: 215 KEKEDVALFFGLSGTGKTTLSASVDRFL 242 + V GLSG+GK+T++ ++++ L Sbjct: 15 GHRGVVIWLTGLSGSGKSTIANALEKKL 42 >gnl|CDD|164809 PHA00442, PHA00442, host recBCD nuclease inhibitor. Length = 59 Score = 27.3 bits (60), Expect = 9.4 Identities = 6/15 (40%), Positives = 10/15 (66%) Query: 477 PRDSWNDVEAYDQKM 491 RD+WND++ Y + Sbjct: 11 TRDAWNDMQGYIDSL 25 >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional. Length = 259 Score = 27.3 bits (60), Expect = 9.4 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 3/62 (4%) Query: 211 INMDKEKEDVALFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEG-GCYAKSINL 269 I+MD + V G SG GK+T +++R I + E EGV +F G Y IN+ Sbjct: 26 ISMDIYRNKVTAIIGPSGCGKSTFIKTLNR--ISELEGPVKVEGVVDFFGQNIYDPRINI 83 Query: 270 SK 271 ++ Sbjct: 84 NR 85 >gnl|CDD|162642 TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) making it difficult to ascribe a specific activity to each one. Eukaryotes appear to have only a single homolog in this subfamily (COQ6) which complements UbiH, but also possess a non-orthologous gene, COQ7 which complements UbiF. Length = 385 Score = 27.2 bits (61), Expect = 9.8 Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 6/39 (15%) Query: 311 RAAYPLNFIHNHAPQSIGKHPKHVIMLAADAFGVLPPVA 349 R A+PL+ HA + + + L DA + P+A Sbjct: 260 RHAFPLSLT--HAKRYVAPR----LALIGDAAHTIHPLA 292 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.320 0.137 0.416 Gapped Lambda K H 0.267 0.0622 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 8,395,915 Number of extensions: 543158 Number of successful extensions: 1260 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1235 Number of HSP's successfully gapped: 62 Length of query: 509 Length of database: 5,994,473 Length adjustment: 98 Effective length of query: 411 Effective length of database: 3,876,889 Effective search space: 1593401379 Effective search space used: 1593401379 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 59 (26.7 bits)