RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780826|ref|YP_003065239.1| phosphoenolpyruvate
carboxykinase [Candidatus Liberibacter asiaticus str. psy62]
(509 letters)
>1ytm_A Phosphoenolpyruvate carboxykinase [ATP],
phosphoenolpyruvate; domain closure, nucleotide binding;
HET: ATP; 2.20A {Anaerobiospirillum succiniciproducens}
PDB: 1yvy_A (A:202-276,A:338-532)
Length = 270
Score = 335 bits (861), Expect = 8e-93
Identities = 124/320 (38%), Positives = 168/320 (52%), Gaps = 65/320 (20%)
Query: 185 GEIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSASVDRFLIG 244
GE+KK +F+ +N P +GI MHCS N D E ++ A+FFGLSGTGKTTLS R LIG
Sbjct: 1 GEMKKGMFSMMNFYLPLQGIAAMHCSANTDLEGKNTAIFFGLSGTGKTTLSTDPKRLLIG 60
Query: 245 DDEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSASCRFGTVLENVVVDECGIPNFKDS 304
DDEHGW +GVFNFE
Sbjct: 61 DDEHGWDDDGVFNFE--------------------------------------------- 75
Query: 305 SVTENTRAAYPLNFIHNHAPQSIGKHPKHVIMLAADAFGVLPPVAYLNPEKAVYYFLSGY 364
P++ K VI L+ADAFGVLPPV+ L+ E+ YYFLSG+
Sbjct: 76 -------IVKPVSKA---------PAAKRVIFLSADAFGVLPPVSILSKEQTKYYFLSGF 119
Query: 365 TAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNILKDYIVKYCVDCWLVNTGWTAGS 424
TAK+AGTE+G+ +P TFS+CFGA F+ P +Y +L + +LVNTGW
Sbjct: 120 TAKLAGTERGITEPTPTFSSCFGAAFLTLPPTKYAEVLVKRMEASGAKAYLVNTGW---- 175
Query: 425 YGEGYRMPLSVTRALLKAIFDNSIKSVPYRVDENFGFSVPLEVKGVDRKLLNPRDSWNDV 484
G G R+ + TR ++ AI D SI + F F+VP E+KGVD K+L+PR+++ D
Sbjct: 176 NGTGKRISIKDTRGIIDAILDGSIDTANTATIPYFNFTVPTELKGVDTKILDPRNTYADA 235
Query: 485 EAYDQKMRELLLMFENNAEK 504
++ K ++L F+ N +K
Sbjct: 236 SEWEVKAKDLAERFQKNFKK 255
>1j3b_A ATP-dependent phosphoenolpyruvate carboxykinase; adenosine
triphosphate, riken structural genomics/proteomics
initiative, RSGI; 2.00A {Thermus thermophilus HB8}
(A:1-209,A:253-338)
Length = 295
Score = 321 bits (825), Expect = 1e-88
Identities = 117/336 (34%), Positives = 168/336 (50%), Gaps = 50/336 (14%)
Query: 1 MEKFDLEGSSRVYRNLSTSRLYEESIRREKTILTCDGALRALTGQHTGRSAFDKFIVRDS 60
+E + RV+ N + L E ++ R + +L G L T +TGRS DKF+VR+
Sbjct: 4 LEALGIHPKKRVFWNTVSPVLVEHTLLRGEGLLAHHGPLVVDTTPYTGRSPKDKFVVREP 63
Query: 61 HTENDVFWEN-NKYISPADFDTLKADMLDYIKDKDLFLQDLVACPHTKNAISVCVVTQYA 119
E +++W N+ +P F+ L ++ Y+ ++DL++QDL A + ++V VVT+
Sbjct: 64 EVEGEIWWGEVNQPFAPEAFEALYQRVVQYLSERDLYVQDLYAGADRRYRLAVRVVTESP 123
Query: 120 WHSLFIRNLLKHKEDLGAVPNMMS----LQVVVLPDFSADPNRHGCCSETIIAVDLTAGL 175
WH+LF RN+ G + + VV P F A P R G SE + + L
Sbjct: 124 WHALFARNMFILPRRFGNDDEVEAFVPGFTVVHAPYFQAVPERDGTRSEVFVGISFQRRL 183
Query: 176 ILIGGTSYAGEIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLS 235
+LI GT YAGEIKKS+FT +N++ P
Sbjct: 184 VLIVGTKYAGEIKKSIFTVMNYLMP----------------------------------- 208
Query: 236 ASVDRFLIGDDEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSASCRFGTVLENVVVD- 294
DEHGWS++GVFNFEGGCYAK I LS E EP I+ AS +F +LENVVV+
Sbjct: 209 ---------KDEHGWSEDGVFNFEGGCYAKVIRLSPEHEPLIYKASNQFEAILENVVVNP 259
Query: 295 ECGIPNFKDSSVTENTRAAYPLNFIHNHAPQSIGKH 330
E + D S TENTR++YP+ + N + H
Sbjct: 260 ESRRVQWDDDSKTENTRSSYPIAHLENVVESGVAGH 295
>1ii2_A Phosphoenolpyruvate carboxykinase; phosphate binding loop,
lyase; 2.00A {Trypanosoma cruzi} (A:1-198,A:241-325)
Length = 283
Score = 304 bits (781), Expect = 1e-83
Identities = 98/328 (29%), Positives = 153/328 (46%), Gaps = 55/328 (16%)
Query: 11 RVYRNLSTSRLYEESIR-REKTILTCDGALRALTGQHTGRSAFDKFIVRDSHTENDVFWE 69
++RNL + L + +++ + + LT GAL ++ TGRS DK IV +V W
Sbjct: 3 TIHRNLLSPELVQWALKIEKDSRLTARGALAVMSYAKTGRSPLDKRIVDTDDVRENVDWG 62
Query: 70 N-NKYISPADFDTLKADMLDYIKDKD-LFLQDLVACPHTKNAISVCVVTQYAWHSLFIRN 127
N +S F ++ +++ ++ LF+ D A + + V V T +H+LF+R+
Sbjct: 63 KVNMKLSEESFARVRKIAKEFLDTREHLFVVDCFAGHDERYRLKVRVFTTRPYHALFMRD 122
Query: 128 LL--KHKEDLGA--VPNMMSLQVVVLPDFSADPNRHGCCSETIIAVDLTAGLILIGGTSY 183
+L E+L P+ + + ADP+ G S T +A++ +I GT Y
Sbjct: 123 MLIVPTPEELATFGEPD---YVIYNAGECKADPSIPGLTSTTCVALNFKTREQVILGTEY 179
Query: 184 AGEIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSASVDRFLI 243
AGE+KK + T + + P+
Sbjct: 180 AGEMKKGILTVMFELMPQM----------------------------------------- 198
Query: 244 GDDEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSASCRFGTVLENVVVD-ECGIPNFK 302
DEH W+ GVFN EGGCYAK+I L+ +TE +I+ A RFG V EN V+D G +F
Sbjct: 199 --DEHVWTDRGVFNIEGGCYAKAIGLNPKTEKDIYDAV-RFGAVAENCVLDKRTGEIDFY 255
Query: 303 DSSVTENTRAAYPLNFIHNHAPQSIGKH 330
D S+ +NTR AYPL+ I ++I H
Sbjct: 256 DESICKNTRVAYPLSHIEGALSKAIAGH 283
>2olr_A Phosphoenolpyruvate carboxykinase; carbon dioxide, lyase;
HET: ATP; 1.60A {Escherichia coli K12}
(A:226-282,A:344-540)
Length = 254
Score = 292 bits (749), Expect = 7e-80
Identities = 108/303 (35%), Positives = 148/303 (48%), Gaps = 66/303 (21%)
Query: 202 RGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEGG 261
+GI MHCS N+ ++ DVA+FFGLSGTGKTTLS R LIGDDEHGW +GVFNF
Sbjct: 1 KGIASMHCSANVGEKG-DVAVFFGLSGTGKTTLSTDPKRRLIGDDEHGWDDDGVFNF--- 56
Query: 262 CYAKSINLSKETEPEIFSASCRFGTVLENVVVDECGIPNFKDSSVTENTRAAYPLNFIHN 321
E V
Sbjct: 57 ---------------------------EIVKPVSKA------------------------ 65
Query: 322 HAPQSIGKHPKHVIMLAADAFGVLPPVAYLNPEKAVYYFLSGYTAKVAGTEKGVLKPEAT 381
+ DAFGVLPPV+ L ++ Y+FLSG+TAK+AGTE+G+ +P T
Sbjct: 66 GHATKVIFLTA-------DAFGVLPPVSRLTADQTQYHFLSGFTAKLAGTERGITEPTPT 118
Query: 382 FSACFGAPFMPRDPVQYGNILKDYIVKYCVDCWLVNTGWTAGSYGEGYRMPLSVTRALLK 441
FSACFGA F+ P QY +L + +LVNTGW G G R+ + TRA++
Sbjct: 119 FSACFGAAFLSLHPTQYAEVLVKRMQAAGAQAYLVNTGW----NGTGKRISIKDTRAIID 174
Query: 442 AIFDNSIKSVPYRVDENFGFSVPLEVKGVDRKLLNPRDSWNDVEAYDQKMRELLLMFENN 501
AI + S+ + F ++P E+ GVD K+L+PR+++ E + +K L +F +N
Sbjct: 175 AILNGSLDNAETFTLPMFNLAIPTELPGVDTKILDPRNTYASPEQWQEKAETLAKLFIDN 234
Query: 502 AEK 504
+K
Sbjct: 235 FDK 237
>2olr_A Phosphoenolpyruvate carboxykinase; carbon dioxide, lyase;
HET: ATP; 1.60A {Escherichia coli K12}
(A:1-225,A:283-343)
Length = 286
Score = 247 bits (632), Expect = 3e-66
Identities = 90/337 (26%), Positives = 133/337 (39%), Gaps = 78/337 (23%)
Query: 1 MEKFDLEGSSRVYRNLSTSRLYEESIR-----REKTILTCDGALRALTGQHTGRSAFDKF 55
+E + + + N S LY+E + E+ +LT GA+ TG TGRS DK+
Sbjct: 12 LEAYGISDVHDIVYNPSYDLLYQEELDPSLTGYERGVLTNLGAVAVDTGIFTGRSPKDKY 71
Query: 56 IVRDSHTENDVFW-------ENNKYISPADFDTLKADMLDYIKDKDLFLQDLVACPHTKN 108
IVRD T + +W +NK +SP + LK + + K LF+ D +
Sbjct: 72 IVRDDTTRDTFWWADKGKGKNDNKPLSPETWQHLKGLVTRQLSGKRLFVVDAFCGANPDT 131
Query: 109 AISVCVVTQYAWHSLFIRNLLKHKEDLGAVPNMMSLQVVVLPDFS-ADPNRHGCCSETII 167
+SV +T+ AW + F++N+ D V+ + G SE +
Sbjct: 132 RLSVRFITEVAWQAHFVKNMFIRPSDEELAGFKPDFIVMNGAKCTNPQWKEQGLNSENFV 191
Query: 168 AVDLTAGLILIGGTSYAGEIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLS 227
A +LT + + + M K +F
Sbjct: 192 AFNLT----------------ERMQLIGGTWYGG----------EMKK-----GMF---- 216
Query: 228 GTGKTTLSASVDRFLIGDDEHGWSKEGVFNF---EGGCYAKSINLSKETEPEIFSASCRF 284
+ N+ GGCYAK+I LSKE EPEI++A R
Sbjct: 217 --------------------------SMMNYLLPLGGCYAKTIKLSKEAEPEIYNA-IRR 249
Query: 285 GTVLENVVVDECGIPNFKDSSVTENTRAAYPLNFIHN 321
+LENV V E G +F D S TENTR +YP+ I N
Sbjct: 250 DALLENVTVREDGTIDFDDGSKTENTRVSYPIYHIDN 286
>1ytm_A Phosphoenolpyruvate carboxykinase [ATP],
phosphoenolpyruvate; domain closure, nucleotide binding;
HET: ATP; 2.20A {Anaerobiospirillum succiniciproducens}
PDB: 1yvy_A (A:14-201,A:277-337)
Length = 249
Score = 239 bits (612), Expect = 6e-64
Identities = 73/324 (22%), Positives = 117/324 (36%), Gaps = 85/324 (26%)
Query: 8 GSSRVYRNLSTSRLYEESIRREKT-----ILTCDGALRALTGQHTGRSAFDKFIVRDSHT 62
G++ + N S L+ + +T GA+ +TG +TGRS DKFIV++ +
Sbjct: 1 GATNIVHNPSHEELFAAETQASLEGFEKGTVTEMGAVNVMTGVYTGRSPKDKFIVKNEAS 60
Query: 63 ENDVFWE-----NNKYISPADFDTLKADMLDYIKDKDLFLQDLVACPHTKNAISVCVVTQ 117
+ + +NK ++ + LKA + +K L++ DL + + + V +
Sbjct: 61 KEIWWTSDEFKNDNKPVTEEAWAQLKALAGKELSNKPLYVVDLFCGANENTRLKIRFVME 120
Query: 118 YAWHSLFIRNLLKHKEDLGAVPNMMSLQVVVLPDFSADPNRHGCCSETIIAVDLTAGLIL 177
AW + F+ N+ + V+ +
Sbjct: 121 VAWQAHFVTNMFIRPTEEELKGFEPDFVVLNASKAKVEN------------------FKE 162
Query: 178 IGGTSYAGEIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSAS 237
+G S +V + + T
Sbjct: 163 LGLNSET-----AVV-----FNLAEKMQ-------------------IILNTW------- 186
Query: 238 VDRFLIGDDEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSASCRFGTVLENVVVDECG 297
+ GGCYAK INLSKE EP+I+ A + +LENV VD G
Sbjct: 187 --------------------YGGGCYAKVINLSKENEPDIWGAI-KRNALLENVTVDANG 225
Query: 298 IPNFKDSSVTENTRAAYPLNFIHN 321
+F D SVTENTR +YP+ I N
Sbjct: 226 KVDFADKSVTENTRVSYPIFHIKN 249
>1ii2_A Phosphoenolpyruvate carboxykinase; phosphate binding loop,
lyase; 2.00A {Trypanosoma cruzi} (A:199-240,A:326-524)
Length = 241
Score = 232 bits (593), Expect = 9e-62
Identities = 71/176 (40%), Positives = 100/176 (56%), Gaps = 2/176 (1%)
Query: 331 PKHVIMLAADAFGVLPPVAYLNPEKAVYYFLSGYTAKVAGTEKGVLK-PEATFSACFGAP 389
PK+VI L DAFGV+PPVA L +A+++F+ GYTA V G E G + FS+CFG P
Sbjct: 43 PKNVIFLTNDAFGVMPPVARLTSAQAMFWFVMGYTANVPGVEAGGTRTARPIFSSCFGGP 102
Query: 390 FMPRDPVQYGNILKDYIVKYCVDCWLVNTGWTAGSYG-EGYRMPLSVTRALLKAIFDNSI 448
F+ R YG L + + K+ WL+NTG+ G RMPL VTRA++ AI D ++
Sbjct: 103 FLVRHATFYGEQLAEKMQKHNSRVWLLNTGYAGGRADRGAKRMPLRVTRAIIDAIHDGTL 162
Query: 449 KSVPYRVDENFGFSVPLEVKGVDRKLLNPRDSWNDVEAYDQKMRELLLMFENNAEK 504
Y +G +P V V LLNPR +W DV +++ +EL+ MF+ +
Sbjct: 163 DRTEYEEYPGWGLHIPKYVAKVPEHLLNPRKAWKDVRQFNETSKELVAMFQESFSA 218
Score = 81.4 bits (201), Expect = 2e-16
Identities = 34/97 (35%), Positives = 44/97 (45%), Gaps = 21/97 (21%)
Query: 204 IMPMHCSINMDKEKEDVALFFGLSGTGKTTLSASVDRFLIGDDEHG-------------- 249
+ MH S N+ K+ DV +FFGLSGTGKTTLSA R LIGD ++
Sbjct: 2 HLCMHASANVGKQG-DVTVFFGLSGTGKTTLSADPHRNLIGDPKNVIFLTNDAFGVMPPV 60
Query: 250 ---WSKEGVFNFEGGCYAKSINLSKE--TEPE-IFSA 280
S + +F F G A + IFS+
Sbjct: 61 ARLTSAQAMFWFVMGYTANVPGVEAGGTRTARPIFSS 97
>1j3b_A ATP-dependent phosphoenolpyruvate carboxykinase; adenosine
triphosphate, riken structural genomics/proteomics
initiative, RSGI; 2.00A {Thermus thermophilus HB8}
(A:217-252,A:339-360,A:418-483)
Length = 124
Score = 108 bits (272), Expect = 2e-24
Identities = 40/84 (47%), Positives = 48/84 (57%)
Query: 392 PRDPVQYGNILKDYIVKYCVDCWLVNTGWTAGSYGEGYRMPLSVTRALLKAIFDNSIKSV 451
+L +LVNTGWT G YG GYR PL VTRALLKA ++++V
Sbjct: 41 FFLSADAYGVLPPIARLSAPRVYLVNTGWTGGPYGVGYRFPLPVTRALLKAALSGALENV 100
Query: 452 PYRVDENFGFSVPLEVKGVDRKLL 475
PYR D FGF VPLE GV ++LL
Sbjct: 101 PYRRDPVFGFEVPLEAPGVPQELL 124
Score = 66.4 bits (162), Expect = 7e-12
Identities = 26/60 (43%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 209 CSINMDKEKEDVALFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEGGCYAKSIN 268
S N+ KE DVA+FFGLSGTGKTTLS +R LIGD + A+
Sbjct: 1 ASANVGKEG-DVAVFFGLSGTGKTTLSTDPERPLIGDPRAIFFLSADAYGVLPPIARLSA 59
>1j3b_A ATP-dependent phosphoenolpyruvate carboxykinase; adenosine
triphosphate, riken structural genomics/proteomics
initiative, RSGI; 2.00A {Thermus thermophilus HB8}
(A:210-216,A:361-417,A:484-529)
Length = 110
Score = 103 bits (259), Expect = 4e-23
Identities = 40/67 (59%), Positives = 51/67 (76%), Gaps = 4/67 (5%)
Query: 343 GVLPPVAYLNPEKAVYYFLSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNIL 402
GV P ++PE+A+YYFLSGYTA+VAGTE+GV +P ATFSACFGAPF+P P Y +L
Sbjct: 2 GVFP----MHPEEAMYYFLSGYTARVAGTERGVTEPRATFSACFGAPFLPMHPGVYARML 57
Query: 403 KDYIVKY 409
+ I K+
Sbjct: 58 GEKIRKH 64
Score = 40.9 bits (96), Expect = 4e-04
Identities = 15/29 (51%), Positives = 22/29 (75%)
Query: 476 NPRDSWNDVEAYDQKMRELLLMFENNAEK 504
NPR++W D EAYDQ+ R+L +F+ N +K
Sbjct: 65 NPRETWADKEAYDQQARKLARLFQENFQK 93
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding,
carbohydrate metabolism, magnesium, metal-binding,
multifunctional enzyme; 2.60A {Lactobacillus casei} PDB:
1jb1_A 1kkl_A 1kkm_A* (A:1-177)
Length = 177
Score = 60.8 bits (147), Expect = 4e-10
Identities = 30/158 (18%), Positives = 52/158 (32%), Gaps = 16/158 (10%)
Query: 194 YLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSASVDRF---LIGDDEHGW 250
YL+ MH + +D L G SG GK+ + + + LI DD
Sbjct: 14 YLDSQL--AERRSMHGVL-VDIY-GLGVLITGDSGVGKSETALELVQRGHRLIADDRVDV 69
Query: 251 SKEGVFNFEGGCYAKSINLSKETEPEIFSASCRFG-------TVLENVV--VDECGIPNF 301
++ G +L + I FG T + +V + F
Sbjct: 70 YQQDEQTIVGAAPPILSHLLEIRGLGIIDVMNLFGAGAVREDTTISLIVHLENWTPDKTF 129
Query: 302 KDSSVTENTRAAYPLNFIHNHAPQSIGKHPKHVIMLAA 339
E T+ + + P +G++ +I +AA
Sbjct: 130 DRLGSGEQTQLIFDVPVPKITVPFKVGRNLAIIIEVAA 167
>1qzx_A SRP54, signal recognition 54 kDa protein; signal recognition
particle, protein targeting, signaling protein; 4.00A
{Sulfolobus solfataricus} (A:98-290)
Length = 193
Score = 33.8 bits (76), Expect = 0.051
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 220 VALFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEGGCYAK 265
+ + G+ G+GKTT + + F + G+ V A
Sbjct: 9 IIMLVGVQGSGKTTTAGKLAYFYK---KRGYKVGLVAADVYRPAAY 51
>2v3c_C SRP54, signal recognition 54 kDa protein;
nucleotide-binding, signal recognition particle,
GTP-binding, RNA-binding; 2.50A {Methanocaldococcus
jannaschii} (C:92-279)
Length = 188
Score = 32.8 bits (74), Expect = 0.11
Identities = 11/32 (34%), Positives = 23/32 (71%)
Query: 211 INMDKEKEDVALFFGLSGTGKTTLSASVDRFL 242
+ ++ +K++V L G+ G+GKTT +A + R++
Sbjct: 1 LELNPKKQNVILLVGIQGSGKTTTAAKLARYI 32
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688)
Length = 258
Score = 32.6 bits (74), Expect = 0.12
Identities = 14/82 (17%), Positives = 27/82 (32%), Gaps = 25/82 (30%)
Query: 13 YRNLSTSRLYEESIRREKTILTCDGALRALTGQHTGRSAFD---------KFIVRDSHTE 63
YR R R + + L AL + + D + I ++ ++
Sbjct: 28 YR----KRQLVT--REAQIKDWVENELEALKLEAEEIPSEDQNEFLLERTREIHNEAESQ 81
Query: 64 ---------NDVFWENNKYISP 76
ND F++ + I+P
Sbjct: 82 LRAAQQQWGND-FYKRDPRIAP 102
>2get_A Pantothenate kinase; homodimer, COA biosynthesis, nucleotide
binding, transferase; HET: CME COK; 2.35A {Mycobacterium
tuberculosis H37RV} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A*
2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A*
(A:1-131,A:196-312)
Length = 248
Score = 32.3 bits (73), Expect = 0.14
Identities = 10/63 (15%), Positives = 17/63 (26%)
Query: 186 EIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSASVDRFLIGD 245
+ +F N D+ + G GK+T + + L
Sbjct: 58 RLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARW 117
Query: 246 DEH 248
D H
Sbjct: 118 DHH 120
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport
system kinase, structural genomics, joint center for
structural genomics, JCSG; 1.95A {Silicibacter SP}
(A:1-61,A:124-208)
Length = 146
Score = 30.9 bits (70), Expect = 0.36
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 211 INMDKEKEDVALFFGLSGTGKTTLSASVDRFL 242
++ + + G G+GK+TLS + L
Sbjct: 15 LDPRQPGRQLVALSGAPGSGKSTLSNPLAAAL 46
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor,
protein transport; 1.95A {Mycoplasma mycoides} PDB:
1zu5_A (A:97-299)
Length = 203
Score = 30.4 bits (67), Expect = 0.49
Identities = 9/38 (23%), Positives = 19/38 (50%)
Query: 211 INMDKEKEDVALFFGLSGTGKTTLSASVDRFLIGDDEH 248
I+ + + ++ + G++GTGKTT A + +
Sbjct: 2 IDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYK 39
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein;
2.00A {Acidianus ambivalens} (F:92-284)
Length = 193
Score = 30.4 bits (67), Expect = 0.56
Identities = 9/38 (23%), Positives = 15/38 (39%)
Query: 213 MDKEKEDVALFFGLSGTGKTTLSASVDRFLIGDDEHGW 250
+ + V + G+ GTGKTT + + F
Sbjct: 2 IPDKIPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVG 39
>2qy9_A Cell division protein FTSY; SRP receptor, protein targeting,
simibi class GTPase, cell cycle, GTP-binding, inner
membrane, membrane; 1.90A {Escherichia coli} (A:93-290)
Length = 198
Score = 30.1 bits (66), Expect = 0.63
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 212 NMDKEKEDVALFFGLSGTGKTTLSASVDRFLIGDDEHGW 250
N++ + V L G++G GKTT + R +
Sbjct: 1 NVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVM 39
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3
(6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...;
bifunctional enzyme, EDTA complex; HET: F6P EDT ADP;
2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B*
(A:27-244)
Length = 218
Score = 30.0 bits (66), Expect = 0.71
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 220 VALFFGLSGTGKTTLSASVDRFL 242
V + GL GKT +S + R+L
Sbjct: 11 VIVMVGLPARGKTYISKKLTRYL 33
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP,
structural genomics, SGC, structural genomics
consortium, signaling protein; HET: GDP; 2.15A {Homo
sapiens} (A:)
Length = 199
Score = 29.9 bits (65), Expect = 0.74
Identities = 7/39 (17%), Positives = 17/39 (43%)
Query: 196 NHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTL 234
+H G++P + + +K + G + GK++
Sbjct: 6 HHHHHSSGLVPRGSAKSFSSQKAYKIVLAGDAAVGKSSF 44
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1,
motor homology domain, kinesin, motor domain,
microtubule-binding; 1.60A {Saccharomyces cerevisiae}
(A:)
Length = 298
Score = 29.5 bits (66), Expect = 0.92
Identities = 25/155 (16%), Positives = 52/155 (33%), Gaps = 36/155 (23%)
Query: 5 DLEGSSRVYRNLSTSRLYEESIRREKTILTCDGALRALTGQHTGRSAFDKFIVRDSHTEN 64
+ +G+ R Y + E+++ +G + +H F++ I +E+
Sbjct: 21 EQKGTMRCYAYVM-----EQNLPENLLFDYENGVITQGLSEHV--YKFNRVIPHLKVSED 73
Query: 65 DVFWENNKYISPADFDTLKADMLDYIKDKDLFLQDLVACPHTKNAISVCVVTQYAWHSLF 124
F + +Y D+ L ++ ++ SL
Sbjct: 74 KFFTQ------------------EYSVYHDMCLNQKKNF-------NLISLSTTPHGSLR 108
Query: 125 --IRNLLKHKEDLGAVPNMMSLQVVVLPD--FSAD 155
+ L K+ + +++LQ V L D FS D
Sbjct: 109 ESLIKFLAEKDTIYQKQYVITLQFVFLSDDEFSQD 143
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B
(MOBB); structural genomics, PSI, protein structure
initiative; 2.10A {Archaeoglobus fulgidus}
(A:1-44,A:95-171)
Length = 121
Score = 29.6 bits (67), Expect = 1.00
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 220 VALFFGLSGTGKTTLSASVDRFL 242
+ G S +GKTTL + L
Sbjct: 4 ILSIVGTSDSGKTTLITRMMPIL 26
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM:
PF02562, structural genomics, PSI-2; 2.35A
{Corynebacterium glutamicum atcc 13032} (A:1-194)
Length = 194
Score = 29.4 bits (65), Expect = 1.2
Identities = 6/31 (19%), Positives = 13/31 (41%)
Query: 217 KEDVALFFGLSGTGKTTLSASVDRFLIGDDE 247
+ G +G+GKT L+ + + +
Sbjct: 21 TNTIVFGLGPAGSGKTYLAXAKAVQALQSKQ 51
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum,
protein transport, biosynthetic protein; HET: GNP; 3.00A
{Bacillus subtilis} PDB: 2px3_A* (A:99-285)
Length = 187
Score = 29.1 bits (64), Expect = 1.3
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 214 DKEKEDVALFFGLSGTGKTTLSA 236
+ + FG +G GKTT A
Sbjct: 3 EPIHSKYIVLFGSTGAGKTTTLA 25
>2cdn_A Adenylate kinase; phosphoryl transfer, associative
mechanism, ATP-binding, nucleotide biosynthesis,
nucleotide-binding, transferase; HET: ADP; 1.9A
{Mycobacterium tuberculosis} (A:)
Length = 201
Score = 28.9 bits (63), Expect = 1.4
Identities = 15/128 (11%), Positives = 35/128 (27%), Gaps = 6/128 (4%)
Query: 213 MDKEKEDVALFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEGGCYAKSINLSKE 272
+ + L G G GK T + L ++ G + + L E
Sbjct: 15 VPRGSHMRVLLLGPPGAGKGTQA----VKLA--EKLGIPQISTGELFRRNIEEGTKLGVE 68
Query: 273 TEPEIFSASCRFGTVLENVVVDECGIPNFKDSSVTENTRAAYPLNFIHNHAPQSIGKHPK 332
+ + + + +V D P+ + + + + + + G
Sbjct: 69 AKRYLDAGDLVPSDLTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDID 128
Query: 333 HVIMLAAD 340
V+
Sbjct: 129 AVLEFRVS 136
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6- bisphosphatase;
transferase (phospho), hydrolase (phospho), glycolysis,
bifunctional enzyme; HET: ATG; 2.00A {Rattus norvegicus}
(A:1-231)
Length = 231
Score = 28.8 bits (63), Expect = 1.5
Identities = 9/41 (21%), Positives = 15/41 (36%)
Query: 202 RGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSASVDRFL 242
R + + + GL GKT +S + R+L
Sbjct: 23 RPALHASQRGVCMTNCPTLIVMVGLPARGKTYISKKLTRYL 63
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural
genomics, APC84050.2, PSI-2, protein structure
initiative; HET: MSE; 1.82A {Neisseria meningitidis
MC58} (A:)
Length = 199
Score = 28.9 bits (63), Expect = 1.5
Identities = 7/21 (33%), Positives = 8/21 (38%)
Query: 222 LFFGLSGTGKTTLSASVDRFL 242
L G G+GKT S
Sbjct: 9 LITGTPGSGKTLKXVSXXAND 29
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein.,
structural genomics, PSI, protein structure initiative;
3.20A {Agrobacterium tumefaciens str} (A:)
Length = 191
Score = 28.9 bits (63), Expect = 1.6
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 213 MDKEKEDVALFFGLSGTGKTTLSASV 238
D ++ L G G+GK+T++ ++
Sbjct: 4 TDDLGGNILLLSGHPGSGKSTIAEAL 29
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein,
beta-barrel, rossmann-fold, kinase fold; 1.95A
{Saccharomyces cerevisiae} (A:392-511)
Length = 120
Score = 28.6 bits (64), Expect = 2.0
Identities = 2/23 (8%), Positives = 6/23 (26%)
Query: 220 VALFFGLSGTGKTTLSASVDRFL 242
+ + LS ++
Sbjct: 6 SIVLGNSLTVSREQLSIALLSTF 28
>3hz6_A Xylulokinase; xylulose, structural genomic, manolate,
transferase, structural genomics, PSI-2, protein
structure initiative; HET: ADP XUL; 1.65A
{Chromobacterium violaceum} (A:1-241)
Length = 241
Score = 28.4 bits (62), Expect = 2.2
Identities = 11/78 (14%), Positives = 20/78 (25%), Gaps = 10/78 (12%)
Query: 222 LFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSAS 281
+ L+G T + + L + W E S + P +
Sbjct: 165 VVLRLTGRHATDRTNASTTGLYRPKDDAWHVE---------LLADYGFSLDLXPRLLEPG 215
Query: 282 CRFGTVLENVVVDECGIP 299
+ G V + G
Sbjct: 216 EQVGGVSAL-AARQTGFV 232
>1qf9_A UMP/CMP kinase, protein
(uridylmonophosphate/cytidylmonophosphate kinase);
nucleoside monophosphate kinase, NMP kinase; HET: ADP
C5P; 1.70A {Dictyostelium discoideum} (A:)
Length = 194
Score = 28.1 bits (61), Expect = 2.4
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 213 MDKEKEDVALFFGLSGTGKTTLSASVDRFL 242
M+K K +V G G+GK T A++ R
Sbjct: 1 MEKSKPNVVFVLGGPGSGKGTQCANIVRDF 30
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome
partition, ATP-binding, DNA- binding, cell division,
transmembrane, inner membrane; HET: DNA ATG; 2.25A
{Pseudomonas aeruginosa} PDB: 2iuu_A* (A:183-574)
Length = 392
Score = 28.4 bits (62), Expect = 2.5
Identities = 8/40 (20%), Positives = 15/40 (37%)
Query: 211 INMDKEKEDVALFFGLSGTGKTTLSASVDRFLIGDDEHGW 250
I D K L G +G+GK+ ++ ++
Sbjct: 25 IITDLAKMPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSE 64
>1yj5_A 5' polynucleotide kinase-3' phosphatase catalytic domain;
beta sandwich, P-loop, transferase; 2.80A {Mus musculus}
(A:205-366)
Length = 162
Score = 28.3 bits (62), Expect = 2.5
Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 4/47 (8%)
Query: 213 MDKEKEDVALFFGLSGTGKTT----LSASVDRFLIGDDEHGWSKEGV 255
+ +V + G G GK+T S + D G + V
Sbjct: 16 LLSPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGSWQRCV 62
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer,
protein phosphatase, dual activity, product, substrate,
transferase, hydrolase; 1.95A {Staphylococcus xylosus}
(A:130-287)
Length = 158
Score = 28.3 bits (63), Expect = 2.5
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 5/47 (10%)
Query: 203 GIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSASVDRF---LIGDD 246
+H + +D V L G SG GK+ + + + L+ DD
Sbjct: 2 RTTSLHGVL-VDVYGVGV-LITGDSGIGKSETALELIKRGHRLVADD 46
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A
{Saccharomyces cerevisiae} (A:)
Length = 203
Score = 28.1 bits (61), Expect = 2.7
Identities = 6/37 (16%), Positives = 10/37 (27%)
Query: 206 PMHCSINMDKEKEDVALFFGLSGTGKTTLSASVDRFL 242
++ V G G GK T + +
Sbjct: 3 ATTSQPAFSPDQVSVIFVLGGPGAGKGTQCEKLVKDY 39
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome
partition, ATP-binding, DNA- binding, cell division,
transmembrane, inner membrane; HET: DNA; 2.7A
{Escherichia coli} PDB: 2j5p_A* (A:136-512)
Length = 377
Score = 28.0 bits (61), Expect = 2.8
Identities = 6/40 (15%), Positives = 15/40 (37%)
Query: 211 INMDKEKEDVALFFGLSGTGKTTLSASVDRFLIGDDEHGW 250
+ D K L G +G+G + ++ ++ +
Sbjct: 25 VVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPED 64
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop,
transferase; HET: ADP; 2.33A {Enterobacteria phage T4}
(A:1-114)
Length = 114
Score = 28.1 bits (62), Expect = 2.9
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 220 VALFFGLSGTGKTTLSASVDRFL 242
+ L G G+GK+T +
Sbjct: 4 IILTIGCPGSGKSTWAREFIAKN 26
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A
{Escherichia coli} (A:)
Length = 175
Score = 28.0 bits (61), Expect = 3.1
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 222 LFFGLSGTGKTTLSASVDRFL 242
+ G+SG+GK+ +++ V L
Sbjct: 12 VLMGVSGSGKSAVASEVAHQL 32
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein,
nucleotide-binding, zinc-binding domain, SOS response,
metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans}
PDB: 2vf8_A* (A:1-107,A:397-493)
Length = 204
Score = 28.0 bits (62), Expect = 3.3
Identities = 8/24 (33%), Positives = 18/24 (75%)
Query: 211 INMDKEKEDVALFFGLSGTGKTTL 234
I++ ++ + +F G+SG+GK++L
Sbjct: 29 ISVKVPRDALVVFTGVSGSGKSSL 52
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide
biosynthesis, nucleotide-binding, transferase,
structural genomics; 1.80A {Thermus thermophilus} (A:)
Length = 186
Score = 27.7 bits (60), Expect = 3.3
Identities = 13/119 (10%), Positives = 31/119 (26%), Gaps = 11/119 (9%)
Query: 222 LFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSAS 281
+F G G GK T ++ + + L G + +
Sbjct: 8 IFLGPPGAGKGTQASRLAQEL----------GFKKLSTGDILRDHVARGTPLGERVRPIM 57
Query: 282 CRFGTVLENVVVDECGIPNFKDSSVTENTRAAYPLNFIHNHAPQSIGKHPKHVIMLAAD 340
R V ++++++ + R + G V+++
Sbjct: 58 ERGDLVPDDLILELIREELAERVIFDGFPR-TLAQAEALDRLLSETGTRLLGVVLVEVP 115
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
(A:)
Length = 237
Score = 27.6 bits (60), Expect = 3.4
Identities = 11/65 (16%), Positives = 24/65 (36%), Gaps = 6/65 (9%)
Query: 186 EIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSASVDRFLIGD 245
++ + FT+ R P I + + G G GK++L +++ +
Sbjct: 5 TVRNATFTW------ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV 58
Query: 246 DEHGW 250
+ H
Sbjct: 59 EGHVA 63
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP
binding motif, ATP- binding, nucleotide-binding,
transferase; HET: ADP; 1.79A {Methanocaldococcus
jannaschii} PDB: 3a4l_A* 3a4n_A (A:1-182)
Length = 182
Score = 27.7 bits (61), Expect = 3.4
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 215 KEKEDVALFFGLSGTGKTTLSASVDRFL 242
+ + L GL G GK+T S ++ + L
Sbjct: 2 GDIMLIILT-GLPGVGKSTFSKNLAKIL 28
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic
protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
(A:106-403)
Length = 298
Score = 27.6 bits (59), Expect = 3.6
Identities = 4/25 (16%), Positives = 9/25 (36%)
Query: 212 NMDKEKEDVALFFGLSGTGKTTLSA 236
++ K + + G KT +
Sbjct: 1 DIHKSPYVIFVVNLKGGVSKTVSTV 25
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein;
membrane protein; 3.10A {Archaeoglobus fulgidus}
(A:1-228)
Length = 228
Score = 27.5 bits (61), Expect = 3.7
Identities = 5/25 (20%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 210 SINMDKEKEDVALFFGLSGTGKTTL 234
+++ + ++ L G +G GK+
Sbjct: 17 NVDFEMGRDYCVLL-GPTGAGKSVF 40
>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin,
acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ;
1.85A {Saccharomyces cerevisiae} (A:156-239)
Length = 84
Score = 27.7 bits (61), Expect = 3.7
Identities = 14/78 (17%), Positives = 18/78 (23%), Gaps = 8/78 (10%)
Query: 311 RAAYPLNFIHNH-APQSIGKHPKHVIMLAADAFGVLPPVAYLNPEKAVYYFLSGYTAKVA 369
P I N + P + + Y
Sbjct: 13 HWNLPGERIFNKIRNLELPLCPYCYKKRREYFPEGYNNKVGVAASQGSXSERPPYILNSY 72
Query: 370 GTEKGVLKPEATFSACFG 387
G VLKP+ TF FG
Sbjct: 73 G----VLKPDITF---FG 83
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY;
protein translocation, GTP-binding, nucleotide-binding,
protein transport; 1.75A {Arabidopsis thaliana}
(A:93-292)
Length = 200
Score = 27.4 bits (59), Expect = 3.9
Identities = 9/40 (22%), Positives = 16/40 (40%)
Query: 211 INMDKEKEDVALFFGLSGTGKTTLSASVDRFLIGDDEHGW 250
+ + K V + G++G GKTT + L +
Sbjct: 1 LQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVL 40
>2og2_A Putative signal recognition particle receptor;
nucleotide-binding, protein transport; 2.00A
{Arabidopsis thaliana} (A:150-349)
Length = 200
Score = 27.4 bits (59), Expect = 3.9
Identities = 9/40 (22%), Positives = 16/40 (40%)
Query: 211 INMDKEKEDVALFFGLSGTGKTTLSASVDRFLIGDDEHGW 250
+ + K V + G++G GKTT + L +
Sbjct: 1 LQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVL 40
>2eyu_A Twitching motility protein PILT; pilus retraction motor,
C-terminal domain PILT, protein transport; 1.87A
{Aquifex aeolicus} (A:)
Length = 261
Score = 27.7 bits (60), Expect = 3.9
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 222 LFFGLSGTGKTTLSASVDRFLIGDDEH 248
L G +G+GK+T AS ++ +
Sbjct: 29 LVTGPTGSGKSTTIASXIDYINQTKSY 55
>2pze_A Cystic fibrosis transmembrane conductance regulator; NBD,
ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A (A:)
Length = 229
Score = 27.4 bits (60), Expect = 4.1
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 211 INMDKEKEDVALFFGLSGTGKTTLSASVDRFL 242
IN E+ + G +G GKT+L + L
Sbjct: 27 INFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 58
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase,
protein-targeting, transport protein; HET: GDP; 1.97A
{Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* (C:115-314)
Length = 200
Score = 27.3 bits (59), Expect = 4.1
Identities = 12/40 (30%), Positives = 17/40 (42%)
Query: 211 INMDKEKEDVALFFGLSGTGKTTLSASVDRFLIGDDEHGW 250
EK V +F G +G+GKTT A + +L
Sbjct: 8 EIRKAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVV 47
>2dpx_A GTP-binding protein RAD; GTPase, small-G, RGK, signal
transduction, diabetes, signaling protein; HET: GDP;
1.80A {Homo sapiens} PDB: 2gjs_A* (A:)
Length = 174
Score = 27.6 bits (59), Expect = 4.1
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 212 NMDKEKEDVALFFGLSGTGKTTL 234
+ E L G G GK+ L
Sbjct: 1 GVSDESVYKVLLLGAPGVGKSAL 23
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate
synthethase 1; transferase, ATP sulfurylase, APS kinase,
PAPS; HET: ADP; 1.75A {Homo sapiens} (B:1-233)
Length = 233
Score = 27.6 bits (60), Expect = 4.2
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 222 LFFGLSGTGKTTLSASVDRFL 242
GLSG GKTT+S +++ +L
Sbjct: 56 WLTGLSGAGKTTVSMALEEYL 76
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP;
2.57A {Sulfolobus acidocaldarius} (A:)
Length = 194
Score = 27.4 bits (59), Expect = 4.6
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 220 VALFFGLSGTGKTTLSASVDRFL 242
+ + G+ G GK+T+ A V L
Sbjct: 3 IGIVTGIPGVGKSTVLAKVKEIL 25
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A
{Enterobacteria phage T4} (A:1-114)
Length = 114
Score = 27.3 bits (60), Expect = 4.7
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 220 VALFFGLSGTGKTTLSA 236
+ L G G+GK+T +
Sbjct: 4 IILTIGCPGSGKSTWAR 20
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase,
hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus dsm
4304} PDB: 2oaq_1 (1:261-446)
Length = 186
Score = 27.1 bits (59), Expect = 4.7
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 222 LFFGLSGTGKTTLSASVDRFLIGDDEH 248
+ G + +GKTT ++ F+ D +
Sbjct: 4 IVVGETASGKTTTLNAIXXFIPPDAKV 30
>1rkb_A Protein AD-004, protein CGI-137; five-stranded parallel
beta-sheet flanked by 7 alpha- helices, transferase;
2.00A {Homo sapiens} (A:)
Length = 173
Score = 27.3 bits (59), Expect = 4.7
Identities = 8/21 (38%), Positives = 9/21 (42%)
Query: 222 LFFGLSGTGKTTLSASVDRFL 242
L G G GKTTL +
Sbjct: 8 LLTGTPGVGKTTLGKELASKS 28
>2ewv_A Twitching motility protein PILT; pilus retraction motor,
ATPase, hexameric PILT, protein transport; HET: ADP;
2.80A {Aquifex aeolicus VF5} PDB: 2eww_A* 2gsz_A*
(A:125-372)
Length = 248
Score = 27.3 bits (59), Expect = 4.8
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 222 LFFGLSGTGKTTLSASVDRFLIGDDEH 248
L G +G+GK+T AS+ ++ +
Sbjct: 16 LVTGPTGSGKSTTIASMIDYINQTKSY 42
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; 2.10A {Aeropyrum pernix K1}
(A:)
Length = 186
Score = 27.2 bits (59), Expect = 4.8
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 213 MDKEKEDVALFFGLSGTGKTTLSASVDRFL 242
EK V GL G+GKTT++ + L
Sbjct: 8 KCIEKGIVVWLTGLPGSGKTTIATRLADLL 37
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain,
heterodimer, nucleotide twinning, protein-protein
complex, protein transport; HET: GCP; 1.90A {Thermus
aquaticus} (A:96-293)
Length = 198
Score = 27.4 bits (59), Expect = 4.9
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 215 KEKEDVALFFGLSGTGKTTLSASVDRFLIGDDEHGW 250
+ K V L G++G GKTT A + R+ +
Sbjct: 4 EPKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVM 39
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
(A:1-249)
Length = 249
Score = 27.1 bits (60), Expect = 4.9
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 211 INMDKEKEDVALFFGLSGTGKTTL 234
I+ K D + +GL+G GKTTL
Sbjct: 40 ISWQIAKGDKWILYGLNGAGKTTL 63
>2jbh_A HHGP; glycosyltransferase, PRTFDC1, transferase, purine
salvage; HET: 5GP; 1.7A {Homo sapiens} (A:)
Length = 225
Score = 27.1 bits (59), Expect = 5.2
Identities = 9/101 (8%), Positives = 16/101 (15%), Gaps = 4/101 (3%)
Query: 318 FIHNHAPQSIGKHPKHVIMLAA--DAFGVLPPVAYLNPEKAVYYF--LSGYTAKVAGTEK 373
+ + + + A + V K
Sbjct: 17 IMDDWPGYDLNLFTYPQHYYGDLEYVLIPHGIIVDRIERLAKDIMKDIGYSDIMVLCVLK 76
Query: 374 GVLKPEATFSACFGAPFMPRDPVQYGNILKDYIVKYCVDCW 414
G K A D + + Y D
Sbjct: 77 GGYKFXADLVEHLKNISRNSDRFVSMKVDFIRLKSYRNDQS 117
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA
ATPase, ATP binding site, hydrolase; HET: ADP; 2.15A
{Escherichia coli} (A:1-303)
Length = 303
Score = 27.1 bits (58), Expect = 5.2
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 211 INMDKEKEDVALFFGLSGTGKTTLSA 236
+ + F G G GKT++S
Sbjct: 1 MQFLQNIPPYLFFTGKGGVGKTSISC 26
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470;
putative iron chelatin ABC transporter, nucleotide
binding domain; 2.40A {Haemophilus influenzae} (C:1-214)
Length = 214
Score = 27.1 bits (60), Expect = 5.2
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 211 INMDKEKEDVALFFGLSGTGKTTL 234
+N D K D+ G +G GK+TL
Sbjct: 24 LNFDLNKGDILAVLGQNGCGKSTL 47
>3fdi_A Uncharacterized protein; cytidylate kinase like protein,
PSI, MCSG, PRK04182 class member, structural genomics;
2.20A {Eubacterium ventriosum atcc 27560} (A:)
Length = 201
Score = 27.0 bits (58), Expect = 5.2
Identities = 4/24 (16%), Positives = 9/24 (37%), Gaps = 2/24 (8%)
Query: 212 NMDKEKEDVALFFGLSGTGKTTLS 235
N K+ + G+G ++
Sbjct: 2 NAXKQI--IIAIGREFGSGGHLVA 23
>2rhm_A Putative kinase; ZP_00765535.1, structural genomics, joint
center for structural genomics, JCSG, protein structure
initiative; HET: MSE; 1.70A {Chloroflexus aurantiacus
j-10-fl} (A:)
Length = 193
Score = 27.2 bits (59), Expect = 5.3
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 222 LFFGLSGTGKTTLSASVDRFL 242
+ G TGKTTLS ++ L
Sbjct: 9 IVTGHPATGKTTLSQALATGL 29
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction,
transferase; HET: AMP; 2.3A {Homo sapiens} (A:)
Length = 199
Score = 26.9 bits (58), Expect = 5.4
Identities = 19/130 (14%), Positives = 33/130 (25%), Gaps = 13/130 (10%)
Query: 213 MDKEKEDVALFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEGGCYAKSINLSKE 272
D K + G G+GK T + G + G + S+
Sbjct: 7 EDLRKCKIIFIIGGPGSGKGTQCEKLVEKY-----------GFTHLSTGELLREELASES 55
Query: 273 TEPEIFSASCRFGTVLENVVVDECGIPNFKDSSVTENT--RAAYPLNFIHNHAPQSIGKH 330
++ G ++ + +V E S YP
Sbjct: 56 ERSKLIRDIMERGDLVPSGIVLELLKEAMVASLGDTRGFLIDGYPREVKQGEEFGRRIGD 115
Query: 331 PKHVIMLAAD 340
P+ VI +
Sbjct: 116 PQLVICMDCS 125
>1ji0_A ABC transporter; ATP binding protein, structural genomics,
PSI, protein structure initiative, midwest center for
structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga
maritima} (A:)
Length = 240
Score = 27.2 bits (60), Expect = 5.6
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 211 INMDKEKEDVALFFGLSGTGKTTL 234
I++ + + G +G GKTT
Sbjct: 25 IDLKVPRGQIVTLIGANGAGKTTT 48
>1kht_A Adenylate kinase; phosphotransferase, signaling protein,
transferase; HET: AMP; 2.50A {Methanococcus voltae} (A:)
Length = 192
Score = 27.0 bits (58), Expect = 5.7
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 220 VALFFGLSGTGKTTLSASVDRFL 242
V + G+ G G TT S L
Sbjct: 5 VVVVTGVPGVGSTTSSQLAMDNL 27
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M
domain, RNA-binding, signal sequence-binding,
helix-turn-helix, protein targeting; 3.20A {Thermus
aquaticus} (A:93-282)
Length = 190
Score = 27.0 bits (58), Expect = 5.9
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 215 KEKEDVALFFGLSGTGKTTLSASVDRFLIGDDEHGW 250
+ ++ GL G+GKTT +A + + G
Sbjct: 3 LKDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPL 38
>1z6g_A Guanylate kinase; structural genomics, SGC, structural
genomics consortium, transferase; HET: EPE; 2.18A
{Plasmodium falciparum 3D7} (A:1-55,A:105-218)
Length = 169
Score = 27.1 bits (60), Expect = 6.0
Identities = 7/24 (29%), Positives = 8/24 (33%)
Query: 211 INMDKEKEDVALFFGLSGTGKTTL 234
+ G SG GK TL
Sbjct: 16 PRGSMNNIYPLVICGPSGVGKGTL 39
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and
permease protein; asymmetric dimer, tetramer,
P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis}
(A:)
Length = 243
Score = 26.8 bits (58), Expect = 6.2
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 211 INMDKEKEDVALFFGLSGTGKTTLSASVDRFL 242
I+ + + + F G SG GK+T+ + ++RF
Sbjct: 21 ISFEAQPNSIIAFAGPSGGGKSTIFSLLERFY 52
>1y63_A LMAJ004144AAA protein; structural genomics, protein
structure initiative, PSI, SGPP; HET: ADP; 1.70A
{Leishmania major strain friedlin} (A:)
Length = 184
Score = 26.8 bits (58), Expect = 6.4
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 213 MDKEKEDVALFFGLSGTGKTTLS 235
M++ K L G GTGKT+++
Sbjct: 5 MEQPKGINILITGTPGTGKTSMA 27
>2vli_A Antibiotic resistance protein; transferase, tunicamycin,
phosphotransferase; 1.95A {Deinococcus radiodurans} (A:)
Length = 183
Score = 26.7 bits (58), Expect = 6.4
Identities = 8/38 (21%), Positives = 14/38 (36%), Gaps = 5/38 (13%)
Query: 222 LFFGLSGTGKTTLSASV-----DRFLIGDDEHGWSKEG 254
G G GKT + ++ F+ +E G +
Sbjct: 9 WINGPFGVGKTHTAHTLHERLPGSFVFEPEEXGQALRK 46
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl
transferase, ribosylnicotinamide kinase; HET: NAD; 2.90A
{Haemophilus influenzae} (A:162-365)
Length = 204
Score = 26.8 bits (58), Expect = 6.5
Identities = 13/120 (10%), Positives = 25/120 (20%), Gaps = 7/120 (5%)
Query: 222 LFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFN-FEGGCYAKSINLSKETEPEIFSA 280
G +GK+ L + + +E VF G A + +
Sbjct: 13 AILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQXALGHQRY 72
Query: 281 SCRFGTVLENVVVDECGIPNFKDSSVTENTRAAYPLNFIHNHAPQSIGKHPKHVIMLAAD 340
+ + T+ Y I+L +
Sbjct: 73 IDYAVRHSHKIAFIDTDFI------TTQAFCIQYEGKAHPFLDSXIKEYPFDVTILLKNN 126
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} (A:)
Length = 263
Score = 26.9 bits (59), Expect = 6.5
Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 211 INMDKEKEDVALFFGLSGTGKTTL 234
IN++ E V + G +G+GKTTL
Sbjct: 24 INLEVNGEKVIIL-GPNGSGKTTL 46
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli}
(A:64-130,A:194-224)
Length = 98
Score = 26.9 bits (60), Expect = 6.6
Identities = 4/34 (11%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 62 TENDVFWE--NNKYISPADFDTLKADMLDYIKDK 93
+N +++ ++ ++ D + L+ M + +
Sbjct: 35 IDNGFYYDVDLDRTLTQEDVEALEKRMHELAEKH 68
>3f9v_A Minichromosome maintenance protein MCM; replicative
helicase, DNA replication, MCM complex, AAA+ protein,
ATP-binding, DNA-binding; 4.35A {Sulfolobus
solfataricus} (A:328-477)
Length = 150
Score = 26.6 bits (57), Expect = 7.1
Identities = 6/42 (14%), Positives = 9/42 (21%)
Query: 222 LFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEGGCY 263
L G GT K+ + + R
Sbjct: 4 LIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVV 45
>2j28_9 Signal recognition particle 54; ribosome, protein/RNA
complex; 8.0A {Escherichia coli} (9:92-330)
Length = 239
Score = 26.6 bits (57), Expect = 7.2
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 211 INMDKEKEDVALFFGLSGTGKTTL 234
+N+ + V L GL G GKTT
Sbjct: 1 LNLAAQPPAVVLMAGLQGAGKTTS 24
>1p9r_A General secretion pathway protein E; bacterial type II
secretion system cytoplasmic protein - GSPE, putative
ATPase/ ATP binding protein; 2.50A {Vibrio cholerae}
(A:147-418)
Length = 272
Score = 26.5 bits (57), Expect = 7.2
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 222 LFFGLSGTGKTTLSASVDRFLIGDDEHGWSKE 253
L G +G+GK+T + + L + + + E
Sbjct: 25 LVTGPTGSGKSTTLYAGLQELNSSERNILTVE 56
>1tue_A Replication protein E1; helicase, replication, E1E2 complex,
AAA+ protein; 2.10A {Human papillomavirus type 18} (A:)
Length = 212
Score = 26.7 bits (58), Expect = 7.5
Identities = 12/52 (23%), Positives = 19/52 (36%)
Query: 209 CSINMDKEKEDVALFFGLSGTGKTTLSASVDRFLIGDDEHGWSKEGVFNFEG 260
S K++ +F G + TGK+ S F+ G + F E
Sbjct: 49 KSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNSTSHFWLEP 100
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary
complex, transcription; HET: ATP; 2.95A {Saccharomyces
cerevisiae} (A:118-328)
Length = 211
Score = 26.8 bits (58), Expect = 7.6
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 210 SINMDKEKEDVALFFGLSGTGKTTLSAS 237
I + + G S TGKT+LS +
Sbjct: 13 KIRXSNFEGPRVVIVGGSQTGKTSLSRT 40
>2ghi_A Transport protein; multidrug resistance protein, MDR,
structural genomics, structural genomics consortium,
SGC; 2.20A {Plasmodium yoelii yoelii str} (A:)
Length = 260
Score = 26.5 bits (57), Expect = 7.7
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 192 FTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSASVDRF 241
F+ +N +P++ SIN G +G+GK+T++ + RF
Sbjct: 20 FSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRF 69
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase,
ATP-binding, nucleotide-binding, transferase; HET: AP5;
2.00A {Marinibacillus marinus} (A:1-115,A:163-216)
Length = 169
Score = 26.6 bits (58), Expect = 7.7
Identities = 19/123 (15%), Positives = 36/123 (29%), Gaps = 14/123 (11%)
Query: 222 LFFGLSGTGKTTLSASVDRFL----IGDDEHGWSKEGVFNFEGGCYAKSINLSKETEPEI 277
+ GL G GK T + + I + + G ++ E+
Sbjct: 4 VLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEV 63
Query: 278 FSASCRFGTVLENVVVDECGIPNFKDSSVTENTRAAYPLNFIHNHAPQSIGKHPKHVIML 337
V E + D+C D +A + + + GK +V+ +
Sbjct: 64 TIG-----IVHERLSKDDCQKGFLLDGFPRTVAQADALDSLLTDL-----GKKLDYVLNI 113
Query: 338 AAD 340
D
Sbjct: 114 KVD 116
>1z47_A CYSA, putative ABC-transporter ATP-binding protein;
alpha/beta motif, beta sandwich, ligand binding protein;
1.90A {Alicyclobacillus acidocaldarius} (A:1-237)
Length = 237
Score = 26.5 bits (58), Expect = 8.3
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 211 INMDKEKEDVALFFGLSGTGKTTL 234
++ + ++ G SG+GKTT+
Sbjct: 34 VSFQIREGEMVGLLGPSGSGKTTI 57
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding
protein LOLD; structural genomics, NPPSFA; 1.70A
{Aquifex aeolicus VF5} PDB: 2pcl_A (A:)
Length = 224
Score = 26.4 bits (58), Expect = 8.3
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 211 INMDKEKEDVALFFGLSGTGKTTL 234
I++ +K + G SG+GK+TL
Sbjct: 23 ISLSVKKGEFVSIIGASGSGKSTL 46
>1htw_A HI0065; nucleotide-binding fold, structural genomics,
structure 2 function project, S2F, unknown function;
HET: ADP; 1.70A {Haemophilus influenzae} (A:)
Length = 158
Score = 26.5 bits (58), Expect = 8.3
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 219 DVALFFGLSGTGKTTLSASVDRFLIGDDEH 248
+ G G GKTTL+ + + + G +
Sbjct: 34 IMVYLNGDLGAGKTTLTRGMLQGI-GHQGN 62
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural
genomics, cell membrane, cobalt transport, hydrolase,
ION transport; 2.30A {Clostridium perfringens atcc
13124} (A:1-230)
Length = 230
Score = 26.4 bits (58), Expect = 8.5
Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
Query: 211 INMDKEKEDVALFFGLSGTGKTTLSASVDRFL--------IGDDEHGWSKEGV 255
INM+ ++ +V G +G GK+TL + + L + +S++G+
Sbjct: 27 INMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGI 79
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA,
signal recognition particle, SRP-GTPase, protein
targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A
{Pyrococcus furiosus} (A:94-285)
Length = 192
Score = 26.4 bits (58), Expect = 8.6
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 215 KEKEDVALFFGLSGTGKTTLSASVDRFL 242
KEK + L G+ G+GKTT A + R+
Sbjct: 4 KEKPTILLMVGIQGSGKTTTVAKLARYF 31
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active
transport, sugar uptake and regulation, transport
protein; 2.20A {Pyrococcus horikoshii} (A:1-239)
Length = 239
Score = 26.2 bits (57), Expect = 9.8
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 211 INMDKEKEDVALFFGLSGTGKTTL 234
+N+ + + + G SG GKTT
Sbjct: 30 LNLTIKDGEFLVLLGPSGCGKTTT 53
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein;
ABC-ATPase, ATP-binding cassette, ATPase, transport
protein; 1.45A {Sulfolobus solfataricus} (K:1-243)
Length = 243
Score = 26.0 bits (57), Expect = 9.9
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 211 INMDKEKEDVALFFGLSGTGKTTL 234
+N++ E + G SG GKTT
Sbjct: 24 VNINIENGERFGILGPSGAGKTTF 47
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.320 0.137 0.416
Gapped
Lambda K H
0.267 0.0446 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 3,956,329
Number of extensions: 180289
Number of successful extensions: 749
Number of sequences better than 10.0: 1
Number of HSP's gapped: 723
Number of HSP's successfully gapped: 106
Length of query: 509
Length of database: 4,956,049
Length adjustment: 92
Effective length of query: 417
Effective length of database: 1,845,989
Effective search space: 769777413
Effective search space used: 769777413
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.4 bits)