BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780826|ref|YP_003065239.1| phosphoenolpyruvate carboxykinase [Candidatus Liberibacter asiaticus str. psy62] (509 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780826|ref|YP_003065239.1| phosphoenolpyruvate carboxykinase [Candidatus Liberibacter asiaticus str. psy62] Length = 509 Score = 1063 bits (2750), Expect = 0.0, Method: Compositional matrix adjust. Identities = 509/509 (100%), Positives = 509/509 (100%) Query: 1 MEKFDLEGSSRVYRNLSTSRLYEESIRREKTILTCDGALRALTGQHTGRSAFDKFIVRDS 60 MEKFDLEGSSRVYRNLSTSRLYEESIRREKTILTCDGALRALTGQHTGRSAFDKFIVRDS Sbjct: 1 MEKFDLEGSSRVYRNLSTSRLYEESIRREKTILTCDGALRALTGQHTGRSAFDKFIVRDS 60 Query: 61 HTENDVFWENNKYISPADFDTLKADMLDYIKDKDLFLQDLVACPHTKNAISVCVVTQYAW 120 HTENDVFWENNKYISPADFDTLKADMLDYIKDKDLFLQDLVACPHTKNAISVCVVTQYAW Sbjct: 61 HTENDVFWENNKYISPADFDTLKADMLDYIKDKDLFLQDLVACPHTKNAISVCVVTQYAW 120 Query: 121 HSLFIRNLLKHKEDLGAVPNMMSLQVVVLPDFSADPNRHGCCSETIIAVDLTAGLILIGG 180 HSLFIRNLLKHKEDLGAVPNMMSLQVVVLPDFSADPNRHGCCSETIIAVDLTAGLILIGG Sbjct: 121 HSLFIRNLLKHKEDLGAVPNMMSLQVVVLPDFSADPNRHGCCSETIIAVDLTAGLILIGG 180 Query: 181 TSYAGEIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSASVDR 240 TSYAGEIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSASVDR Sbjct: 181 TSYAGEIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSASVDR 240 Query: 241 FLIGDDEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSASCRFGTVLENVVVDECGIPN 300 FLIGDDEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSASCRFGTVLENVVVDECGIPN Sbjct: 241 FLIGDDEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSASCRFGTVLENVVVDECGIPN 300 Query: 301 FKDSSVTENTRAAYPLNFIHNHAPQSIGKHPKHVIMLAADAFGVLPPVAYLNPEKAVYYF 360 FKDSSVTENTRAAYPLNFIHNHAPQSIGKHPKHVIMLAADAFGVLPPVAYLNPEKAVYYF Sbjct: 301 FKDSSVTENTRAAYPLNFIHNHAPQSIGKHPKHVIMLAADAFGVLPPVAYLNPEKAVYYF 360 Query: 361 LSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNILKDYIVKYCVDCWLVNTGW 420 LSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNILKDYIVKYCVDCWLVNTGW Sbjct: 361 LSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNILKDYIVKYCVDCWLVNTGW 420 Query: 421 TAGSYGEGYRMPLSVTRALLKAIFDNSIKSVPYRVDENFGFSVPLEVKGVDRKLLNPRDS 480 TAGSYGEGYRMPLSVTRALLKAIFDNSIKSVPYRVDENFGFSVPLEVKGVDRKLLNPRDS Sbjct: 421 TAGSYGEGYRMPLSVTRALLKAIFDNSIKSVPYRVDENFGFSVPLEVKGVDRKLLNPRDS 480 Query: 481 WNDVEAYDQKMRELLLMFENNAEKKQIKI 509 WNDVEAYDQKMRELLLMFENNAEKKQIKI Sbjct: 481 WNDVEAYDQKMRELLLMFENNAEKKQIKI 509 >gi|254780340|ref|YP_003064753.1| proline/glycine betaine ABC transporter, ATP-binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 348 Score = 30.4 bits (67), Expect = 0.072, Method: Compositional matrix adjust. Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Query: 188 KKSVFTYLNH-IFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSASVD 239 K+S ++ H E G++ N++ +K ++ + GLSG GK+TL S++ Sbjct: 24 KRSRYSIKKHDKVSEYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSIN 76 >gi|254780877|ref|YP_003065290.1| ATP-dependent Clp protease, ATP-binding subunit protein [Candidatus Liberibacter asiaticus str. psy62] Length = 853 Score = 26.2 bits (56), Expect = 1.4, Method: Compositional matrix adjust. Identities = 11/25 (44%), Positives = 15/25 (60%) Query: 222 LFFGLSGTGKTTLSASVDRFLIGDD 246 +F G +G GKT L S+ R L D+ Sbjct: 602 MFLGPTGVGKTELVKSLARLLFDDE 626 >gi|254780824|ref|YP_003065237.1| hypothetical protein CLIBASIA_03585 [Candidatus Liberibacter asiaticus str. psy62] Length = 162 Score = 25.4 bits (54), Expect = 2.5, Method: Compositional matrix adjust. Identities = 12/28 (42%), Positives = 17/28 (60%) Query: 219 DVALFFGLSGTGKTTLSASVDRFLIGDD 246 D G G+GK+ L+ S+ RFL+ DD Sbjct: 34 DCLTLSGDLGSGKSFLARSIIRFLMHDD 61 >gi|254780552|ref|YP_003064965.1| Holliday junction DNA helicase RuvB [Candidatus Liberibacter asiaticus str. psy62] Length = 334 Score = 25.0 bits (53), Expect = 3.2, Method: Compositional matrix adjust. Identities = 14/27 (51%), Positives = 15/27 (55%) Query: 216 EKEDVALFFGLSGTGKTTLSASVDRFL 242 E D LF G G GKTTL+ V R L Sbjct: 52 EALDHVLFVGPPGLGKTTLAQVVAREL 78 >gi|254780623|ref|YP_003065036.1| 2-polyprenylphenol 6-hydroxylase [Candidatus Liberibacter asiaticus str. psy62] Length = 517 Score = 24.6 bits (52), Expect = 4.0, Method: Compositional matrix adjust. Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%) Query: 80 DTLKADMLDYIKDKDLFLQDLVACPHTKNAISVCVVTQYAWHSL 123 D + + +D +K D + L AC H +SV +V + H+L Sbjct: 238 DVITMEWIDGVKISDT--EKLRACGHDLERLSVTLVQSFLLHTL 279 >gi|254780711|ref|YP_003065124.1| signal recognition particle protein [Candidatus Liberibacter asiaticus str. psy62] Length = 461 Score = 24.6 bits (52), Expect = 4.2, Method: Compositional matrix adjust. Identities = 9/19 (47%), Positives = 13/19 (68%) Query: 220 VALFFGLSGTGKTTLSASV 238 V + GL G+GKTT +A + Sbjct: 102 VIMLVGLQGSGKTTTTAKI 120 >gi|254780270|ref|YP_003064683.1| ATP-dependent protease La [Candidatus Liberibacter asiaticus str. psy62] Length = 820 Score = 23.9 bits (50), Expect = 6.2, Method: Compositional matrix adjust. Identities = 13/40 (32%), Positives = 21/40 (52%) Query: 201 ERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSASVDR 240 ER I + + + K K + F G G GKT+L+ S+ + Sbjct: 349 ERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAK 388 >gi|254781060|ref|YP_003065473.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 249 Score = 23.5 bits (49), Expect = 7.8, Method: Compositional matrix adjust. Identities = 10/25 (40%), Positives = 16/25 (64%) Query: 211 INMDKEKEDVALFFGLSGTGKTTLS 235 +N+ E +V G +G+GK+TLS Sbjct: 22 LNLKVEPSEVVAIMGPNGSGKSTLS 46 >gi|254780709|ref|YP_003065122.1| cell division protein [Candidatus Liberibacter asiaticus str. psy62] Length = 321 Score = 23.5 bits (49), Expect = 8.0, Method: Compositional matrix adjust. Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 183 YAGEIKKSVFTYLNHIFPERGIMPMHCSINMD-KEKEDVALFFGLSGTGKTTL 234 YA ++ Y + +MP+ N D + V L G++G GKTT+ Sbjct: 75 YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.320 0.137 0.416 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 341,769 Number of Sequences: 1233 Number of extensions: 14748 Number of successful extensions: 54 Number of sequences better than 100.0: 12 Number of HSP's better than 100.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 44 Number of HSP's gapped (non-prelim): 12 length of query: 509 length of database: 328,796 effective HSP length: 78 effective length of query: 431 effective length of database: 232,622 effective search space: 100260082 effective search space used: 100260082 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 40 (20.0 bits)