BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780826|ref|YP_003065239.1| phosphoenolpyruvate
carboxykinase [Candidatus Liberibacter asiaticus str. psy62]
         (509 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780826|ref|YP_003065239.1| phosphoenolpyruvate carboxykinase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 509

 Score = 1063 bits (2750), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 509/509 (100%), Positives = 509/509 (100%)

Query: 1   MEKFDLEGSSRVYRNLSTSRLYEESIRREKTILTCDGALRALTGQHTGRSAFDKFIVRDS 60
           MEKFDLEGSSRVYRNLSTSRLYEESIRREKTILTCDGALRALTGQHTGRSAFDKFIVRDS
Sbjct: 1   MEKFDLEGSSRVYRNLSTSRLYEESIRREKTILTCDGALRALTGQHTGRSAFDKFIVRDS 60

Query: 61  HTENDVFWENNKYISPADFDTLKADMLDYIKDKDLFLQDLVACPHTKNAISVCVVTQYAW 120
           HTENDVFWENNKYISPADFDTLKADMLDYIKDKDLFLQDLVACPHTKNAISVCVVTQYAW
Sbjct: 61  HTENDVFWENNKYISPADFDTLKADMLDYIKDKDLFLQDLVACPHTKNAISVCVVTQYAW 120

Query: 121 HSLFIRNLLKHKEDLGAVPNMMSLQVVVLPDFSADPNRHGCCSETIIAVDLTAGLILIGG 180
           HSLFIRNLLKHKEDLGAVPNMMSLQVVVLPDFSADPNRHGCCSETIIAVDLTAGLILIGG
Sbjct: 121 HSLFIRNLLKHKEDLGAVPNMMSLQVVVLPDFSADPNRHGCCSETIIAVDLTAGLILIGG 180

Query: 181 TSYAGEIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSASVDR 240
           TSYAGEIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSASVDR
Sbjct: 181 TSYAGEIKKSVFTYLNHIFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSASVDR 240

Query: 241 FLIGDDEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSASCRFGTVLENVVVDECGIPN 300
           FLIGDDEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSASCRFGTVLENVVVDECGIPN
Sbjct: 241 FLIGDDEHGWSKEGVFNFEGGCYAKSINLSKETEPEIFSASCRFGTVLENVVVDECGIPN 300

Query: 301 FKDSSVTENTRAAYPLNFIHNHAPQSIGKHPKHVIMLAADAFGVLPPVAYLNPEKAVYYF 360
           FKDSSVTENTRAAYPLNFIHNHAPQSIGKHPKHVIMLAADAFGVLPPVAYLNPEKAVYYF
Sbjct: 301 FKDSSVTENTRAAYPLNFIHNHAPQSIGKHPKHVIMLAADAFGVLPPVAYLNPEKAVYYF 360

Query: 361 LSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNILKDYIVKYCVDCWLVNTGW 420
           LSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNILKDYIVKYCVDCWLVNTGW
Sbjct: 361 LSGYTAKVAGTEKGVLKPEATFSACFGAPFMPRDPVQYGNILKDYIVKYCVDCWLVNTGW 420

Query: 421 TAGSYGEGYRMPLSVTRALLKAIFDNSIKSVPYRVDENFGFSVPLEVKGVDRKLLNPRDS 480
           TAGSYGEGYRMPLSVTRALLKAIFDNSIKSVPYRVDENFGFSVPLEVKGVDRKLLNPRDS
Sbjct: 421 TAGSYGEGYRMPLSVTRALLKAIFDNSIKSVPYRVDENFGFSVPLEVKGVDRKLLNPRDS 480

Query: 481 WNDVEAYDQKMRELLLMFENNAEKKQIKI 509
           WNDVEAYDQKMRELLLMFENNAEKKQIKI
Sbjct: 481 WNDVEAYDQKMRELLLMFENNAEKKQIKI 509


>gi|254780340|ref|YP_003064753.1| proline/glycine betaine ABC transporter, ATP-binding protein
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 348

 Score = 30.4 bits (67), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 188 KKSVFTYLNH-IFPERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSASVD 239
           K+S ++   H    E G++      N++ +K ++ +  GLSG GK+TL  S++
Sbjct: 24  KRSRYSIKKHDKVSEYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSIN 76


>gi|254780877|ref|YP_003065290.1| ATP-dependent Clp protease, ATP-binding subunit protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 853

 Score = 26.2 bits (56), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 222 LFFGLSGTGKTTLSASVDRFLIGDD 246
           +F G +G GKT L  S+ R L  D+
Sbjct: 602 MFLGPTGVGKTELVKSLARLLFDDE 626


>gi|254780824|ref|YP_003065237.1| hypothetical protein CLIBASIA_03585 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 162

 Score = 25.4 bits (54), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 219 DVALFFGLSGTGKTTLSASVDRFLIGDD 246
           D     G  G+GK+ L+ S+ RFL+ DD
Sbjct: 34  DCLTLSGDLGSGKSFLARSIIRFLMHDD 61


>gi|254780552|ref|YP_003064965.1| Holliday junction DNA helicase RuvB [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 334

 Score = 25.0 bits (53), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 14/27 (51%), Positives = 15/27 (55%)

Query: 216 EKEDVALFFGLSGTGKTTLSASVDRFL 242
           E  D  LF G  G GKTTL+  V R L
Sbjct: 52  EALDHVLFVGPPGLGKTTLAQVVAREL 78


>gi|254780623|ref|YP_003065036.1| 2-polyprenylphenol 6-hydroxylase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 517

 Score = 24.6 bits (52), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 80  DTLKADMLDYIKDKDLFLQDLVACPHTKNAISVCVVTQYAWHSL 123
           D +  + +D +K  D   + L AC H    +SV +V  +  H+L
Sbjct: 238 DVITMEWIDGVKISDT--EKLRACGHDLERLSVTLVQSFLLHTL 279


>gi|254780711|ref|YP_003065124.1| signal recognition particle protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 461

 Score = 24.6 bits (52), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 220 VALFFGLSGTGKTTLSASV 238
           V +  GL G+GKTT +A +
Sbjct: 102 VIMLVGLQGSGKTTTTAKI 120


>gi|254780270|ref|YP_003064683.1| ATP-dependent protease La [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 820

 Score = 23.9 bits (50), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 13/40 (32%), Positives = 21/40 (52%)

Query: 201 ERGIMPMHCSINMDKEKEDVALFFGLSGTGKTTLSASVDR 240
           ER I  +   + + K K  +  F G  G GKT+L+ S+ +
Sbjct: 349 ERIIEYLAVQMRVIKNKGLILCFVGPPGVGKTSLAQSIAK 388


>gi|254781060|ref|YP_003065473.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 249

 Score = 23.5 bits (49), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 211 INMDKEKEDVALFFGLSGTGKTTLS 235
           +N+  E  +V    G +G+GK+TLS
Sbjct: 22  LNLKVEPSEVVAIMGPNGSGKSTLS 46


>gi|254780709|ref|YP_003065122.1| cell division protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 321

 Score = 23.5 bits (49), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 183 YAGEIKKSVFTYLNHIFPERGIMPMHCSINMD-KEKEDVALFFGLSGTGKTTL 234
           YA ++      Y       + +MP+    N D   +  V L  G++G GKTT+
Sbjct: 75  YAKDVSVQRVLYDVSELIHKMLMPLSKPFNWDFSHRPHVILVVGVNGVGKTTV 127


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.320    0.137    0.416 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 341,769
Number of Sequences: 1233
Number of extensions: 14748
Number of successful extensions: 54
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 44
Number of HSP's gapped (non-prelim): 12
length of query: 509
length of database: 328,796
effective HSP length: 78
effective length of query: 431
effective length of database: 232,622
effective search space: 100260082
effective search space used: 100260082
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 40 (20.0 bits)