HHsearch alignment for GI: 254780827 and conserved domain: COG0125
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism].
Probab=96.87 E-value=0.029 Score=35.14 Aligned_cols=139 Identities=23% Similarity=0.211 Sum_probs=72.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCHHHCC--CCHHHH------HHHH-HHH
Q ss_conf 7679995278666733799999999973389868999508875882688760002018--981331------2899-999
Q gi|254780827|r 82 IPFVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLTANNLMQRK--GFPESY------DSNK-LLT 152 (311)
Q Consensus 82 ~PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~~~~l~~rk--GfPeS~------D~~~-L~~ 152 (311)
T Consensus 2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~-~v~~trEP~~-~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~~h~~~ 79 (208)
T COG0125 2 KGMFIVIEGIDGAGKTTQAELLKERLEERGI-KVVLTREPGG-TPIGEKIRELLLNGEEKLSPKAEALLFAADRAQHLEE 79 (208)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCC-EEEEEECCCC-CHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 9629999788889889999999999998298-0799868999-8699999999738866788899999999999999999
Q ss_pred HHH-HHHCCCCEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCHHCCCCCCCCCCCCCEEECCCCCEEEEEECCHHHHH
Q ss_conf 999-7412664058740443225658983699868965997061003576545757774010002311577308899988
Q gi|254780827|r 153 FLS-DVKSGKKKVAVPRYSHSQYDILEGEYDTIIQPDILLIEGINVLQQNSLSDNQKATPMISDFLDFSIYIDADKRDIH 231 (311)
Q Consensus 153 ~L~-~lK~G~~~V~~PvYsh~~~D~vp~~~~vi~~pdIIIvEGi~vL~~~~l~~~~~~~~~vsD~fD~sIyVDad~~~i~ 231 (311)
T Consensus 80 ~i~pal~~g~-vVI~DRy~~Ss~AYQ-g~---~~~~~~~~~~~l~~~~~~~~------------~PD~ti~Ldv~~e~al 142 (208)
T COG0125 80 VIKPALKEGK-VVICDRYVDSSLAYQ-GG---GRGLDLDWVLALNEFAPGGL------------KPDLTLYLDVPPEVAL 142 (208)
T ss_pred HHHHHHCCCC-EEEECCCCCHHHHHH-HH---HCCCCHHHHHHHHHHCCCCC------------CCCEEEEEECCHHHHH
T ss_conf 9788762899-999878313788853-53---05999899999997654789------------9988999948889999
Q ss_pred HHHHHHHH
Q ss_conf 79988788
Q gi|254780827|r 232 RWYLNRFL 239 (311)
Q Consensus 232 ~wyi~Rf~ 239 (311)
T Consensus 143 ~R~~~r~~ 150 (208)
T COG0125 143 ERIRKRGE 150 (208)
T ss_pred HHHHHCCC
T ss_conf 99983277