HHsearch alignment for GI: 254780827 and conserved domain: COG0125

>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism].
Probab=96.87  E-value=0.029  Score=35.14  Aligned_cols=139  Identities=23%  Similarity=0.211  Sum_probs=72.0

Q ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCHHHCC--CCHHHH------HHHH-HHH
Q ss_conf             7679995278666733799999999973389868999508875882688760002018--981331------2899-999
Q gi|254780827|r   82 IPFVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLTANNLMQRK--GFPESY------DSNK-LLT  152 (311)
Q Consensus        82 ~PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~~~~l~~rk--GfPeS~------D~~~-L~~  152 (311)
T Consensus         2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~-~v~~trEP~~-~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~~h~~~   79 (208)
T COG0125           2 KGMFIVIEGIDGAGKTTQAELLKERLEERGI-KVVLTREPGG-TPIGEKIRELLLNGEEKLSPKAEALLFAADRAQHLEE   79 (208)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCC-EEEEEECCCC-CHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             9629999788889889999999999998298-0799868999-8699999999738866788899999999999999999


Q ss_pred             HHH-HHHCCCCEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCHHCCCCCCCCCCCCCEEECCCCCEEEEEECCHHHHH
Q ss_conf             999-7412664058740443225658983699868965997061003576545757774010002311577308899988
Q gi|254780827|r  153 FLS-DVKSGKKKVAVPRYSHSQYDILEGEYDTIIQPDILLIEGINVLQQNSLSDNQKATPMISDFLDFSIYIDADKRDIH  231 (311)
Q Consensus       153 ~L~-~lK~G~~~V~~PvYsh~~~D~vp~~~~vi~~pdIIIvEGi~vL~~~~l~~~~~~~~~vsD~fD~sIyVDad~~~i~  231 (311)
T Consensus        80 ~i~pal~~g~-vVI~DRy~~Ss~AYQ-g~---~~~~~~~~~~~l~~~~~~~~------------~PD~ti~Ldv~~e~al  142 (208)
T COG0125          80 VIKPALKEGK-VVICDRYVDSSLAYQ-GG---GRGLDLDWVLALNEFAPGGL------------KPDLTLYLDVPPEVAL  142 (208)
T ss_pred             HHHHHHCCCC-EEEECCCCCHHHHHH-HH---HCCCCHHHHHHHHHHCCCCC------------CCCEEEEEECCHHHHH
T ss_conf             9788762899-999878313788853-53---05999899999997654789------------9988999948889999


Q ss_pred             HHHHHHHH
Q ss_conf             79988788
Q gi|254780827|r  232 RWYLNRFL  239 (311)
Q Consensus       232 ~wyi~Rf~  239 (311)
T Consensus       143 ~R~~~r~~  150 (208)
T COG0125         143 ERIRKRGE  150 (208)
T ss_pred             HHHHHCCC
T ss_conf             99983277