HHsearch alignment for GI: 254780827 and conserved domain: COG4988
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones].
Probab=95.27 E-value=0.015 Score=37.14 Aligned_cols=95 Identities=16% Similarity=0.183 Sum_probs=57.9
Q ss_pred CCCHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHCCCCC-----------------------------C
Q ss_conf 468999-------99998999999999999999989999--987167766-----------------------------7
Q gi|254780827|r 39 PIDSTE-------IYKIYFPLSHLLLINVNSAKITCHQY--NKFLNLKEE-----------------------------S 80 (311)
Q Consensus 39 ~i~~~e-------v~~iy~pl~~ll~~~~~~~~~~~~~~--~~fl~~~~~-----------------------------~ 80 (311)
T Consensus 254 ~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~ei~~~~l~~~y~~g 333 (559)
T COG4988 254 DLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDG 333 (559)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCEEEECCCC
T ss_conf 75089999999975988899999888999985036689899997259877788764321356897466602147855899
Q ss_pred -C---------CC-EEEEEECCCCCCHHHHHHHHHHHHHHC-CC-----------------CCEEEEEECCCCCCHHHHH
Q ss_conf -8---------76-799952786667337999999999733-89-----------------8689995088758826887
Q gi|254780827|r 81 -K---------IP-FVVGITGSVAVGKSTFARILCILLQQI-SN-----------------FKVSLITTDGFLFPNAVLT 131 (311)
Q Consensus 81 -k---------~P-fIIGIAG~~asGKST~Ar~L~~lL~~~-~~-----------------~~V~lis~DgF~~~n~~l~ 131 (311)
T Consensus 334 ~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTire 413 (559)
T COG4988 334 KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRE 413 (559)
T ss_pred CCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHEEEECCCCCCCCCCHHH
T ss_conf 85566710675489679998899997899999984757777844888993100068778886724627998405641887
Q ss_pred HH
Q ss_conf 60
Q gi|254780827|r 132 AN 133 (311)
Q Consensus 132 ~~ 133 (311)
T Consensus 414 Ni 415 (559)
T COG4988 414 NI 415 (559)
T ss_pred HH
T ss_conf 77