HHsearch alignment for GI: 254780827 and conserved domain: KOG0780

Probab=96.62  E-value=0.0072  Score=39.21  Aligned_cols=97  Identities=20%  Similarity=0.234  Sum_probs=60.1

Q ss_pred             HHCCCCCCCCHHHHHHHHCCCCCCCHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEE
Q ss_conf             3147999889899998744888468999--------99998999999999999999989999987167766787679995
Q gi|254780827|r   17 VHSKFSSILSKKISNQLLSFDSPIDSTE--------IYKIYFPLSHLLLINVNSAKITCHQYNKFLNLKEESKIPFVVGI   88 (311)
Q Consensus        17 ~~~~~~~~l~~~~~~~l~~~~d~i~~~e--------v~~iy~pl~~ll~~~~~~~~~~~~~~~~fl~~~~~~k~PfIIGI   88 (311)
T Consensus        40 LesDV~~~lV~~l~~nir~~i~~~~~~~G~nk~r~i~~~vf~eL~kl~dp----------~~~~~---~~~K~kpsVimf  106 (483)
T KOG0780          40 LESDVNPRLVKELRENIRKIINLEKLASGVNKRRIIQKAVFDELVKLLDP----------GKSAL---QPKKGKPSVIMF  106 (483)
T ss_pred             HHCCCCHHHHHHHHHHHHHHHCHHHHCCCCCHHHHHHHHHHHHHHHHHCC----------CCCCC---CCCCCCCCEEEE
T ss_conf             85258888999999999987462420244578899999999999997189----------97646---615689708999


Q ss_pred             ECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHH
Q ss_conf             2786667337999999999733898689995088758826
Q gi|254780827|r   89 TGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNA  128 (311)
Q Consensus        89 AG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~  128 (311)
T Consensus       107 VGLqG~GKTTtc~KlA~y~kkk-G~K~~LvcaDTF-RagA  144 (483)
T KOG0780         107 VGLQGSGKTTTCTKLAYYYKKK-GYKVALVCADTF-RAGA  144 (483)
T ss_pred             EECCCCCCCEEHHHHHHHHHHC-CCCEEEEEECCC-CCCH
T ss_conf             8305788630089999999846-872457760224-5306