HHsearch alignment for GI: 254780827 and conserved domain: PRK05480

Probab=100.00  E-value=5.6e-45  Score=324.38  Aligned_cols=190  Identities=23%  Similarity=0.401  Sum_probs=165.6

Q ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHH--HHCHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf             7876799952786667337999999999733898689995088758826887--60002018981331289999999974
Q gi|254780827|r   80 SKIPFVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLT--ANNLMQRKGFPESYDSNKLLTFLSDV  157 (311)
Q Consensus        80 ~k~PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~--~~~l~~rkGfPeS~D~~~L~~~L~~l  157 (311)
T Consensus         3 ~k~P~iIgIaG~SgSGKTT~a~~L~~~l---~~~~v~vi~~D~Yy~~~~~~~~~e~~~-~nfD~P~a~d~~ll~~~L~~L   78 (209)
T PRK05480          3 MKQPIIIGIAGGSGSGKTTVASTIYEEL---GDESIAVISQDSYYKDQSHLSMEERVK-TNYDHPDAFDHDLLIEHLKAL   78 (209)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHC---CCCCEEEEECCCCCCCCCCCCHHHHCC-CCCCCCHHHHHHHHHHHHHHH
T ss_conf             8898899998999778999999999980---868759995544124734078868123-687882676699999999999


Q ss_pred             HCCCCEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCHHCCCCCCCCCCCCCEEECCCCCEEEEEECCHHHHHHHHHHH
Q ss_conf             12664058740443225658983699868965997061003576545757774010002311577308899988799887
Q gi|254780827|r  158 KSGKKKVAVPRYSHSQYDILEGEYDTIIQPDILLIEGINVLQQNSLSDNQKATPMISDFLDFSIYIDADKRDIHRWYLNR  237 (311)
Q Consensus       158 K~G~~~V~~PvYsh~~~D~vp~~~~vi~~pdIIIvEGi~vL~~~~l~~~~~~~~~vsD~fD~sIyVDad~~~i~~wyi~R  237 (311)
T Consensus        79 ~~G~~-v~~P~Ydf~t~~r~~-~~~~i~~~~iiIvEGi~~l~~~~----------lr~~~DlkIfid~~~d~rl~RRi~R  146 (209)
T PRK05480         79 KAGKA-IEIPVYDYTEHTRSK-ETIHVEPKDVIILEGILLLEDER----------LRDLMDIKIFVDTPLDIRLIRRLKR  146 (209)
T ss_pred             HCCCC-CCCCCCCCCCCCCCC-CEEEECCCCEEEEECHHHCCCHH----------HHHHHCEEEEEECCHHHHHHHHHHH
T ss_conf             74998-756754455665578-63896698769993456406787----------8865265799966777899999997


Q ss_pred             HHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCEE
Q ss_conf             8887665201677799886059989999999999886316689995201313664999758998464
Q gi|254780827|r  238 FLKLRETAFLNPRSYFHHFTEISEEQSLKIAETAWNNINLPNLQHNILPTRKRADLILSKGEDHSVK  304 (311)
Q Consensus       238 f~~lr~~a~~~~~s~~~~y~~l~~~ea~~~a~~iW~~in~pnl~e~I~PTr~rADlIi~k~~~H~v~  304 (311)
T Consensus       147 D~~eRG---r~~e~vi~q----------------~~~~v~p~~~~yI~P~k~~ADlII~~~~~~~va  194 (209)
T PRK05480        147 DVNERG---RSLESVINQ----------------YLSTVRPMHLQFIEPSKRYADIIIPEGGKNRVA  194 (209)
T ss_pred             HHHHHC---CCHHHHHHH----------------HHHHHHHHHHHHCHHHHHCCEEEECCCCCCHHH
T ss_conf             899978---899999999----------------999765769976845274240898899964599