HHsearch alignment for GI: 254780827 and conserved domain: PRK06995
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=97.75 E-value=0.00016 Score=50.49 Aligned_cols=80 Identities=24% Similarity=0.266 Sum_probs=52.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH-HCCCCCEEEEEECCCCCCHHHHHHHCHHHCCCCH--HHHHHHHHHHHHHHHHCCC
Q ss_conf 999527866673379999999997-3389868999508875882688760002018981--3312899999999741266
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ-QISNFKVSLITTDGFLFPNAVLTANNLMQRKGFP--ESYDSNKLLTFLSDVKSGK 161 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~-~~~~~~V~lis~DgF~~~n~~l~~~~l~~rkGfP--eS~D~~~L~~~L~~lK~G~ 161 (311)
T Consensus 178 V~alVGPTGVGKTTTiAKLAAr~~l~~g~~kVaLIT~DTY-RIgAvEQLktYa~IlgvPv~vv~~~~eL~~aL~~l~~~- 255 (404)
T PRK06995 178 VFALVGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSY-RIGGHEQLRIYGKILGVPVHAVKDAADLRLALAELRNK- 255 (404)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCC-CHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCC-
T ss_conf 5898668887637589999999999838983799976875-47899999999987595599959999999999970899-
Q ss_pred CEEEE
Q ss_conf 40587
Q gi|254780827|r 162 KKVAV 166 (311)
Q Consensus 162 ~~V~~ 166 (311)
T Consensus 256 dlILI 260 (404)
T PRK06995 256 HIVLI 260 (404)
T ss_pred CEEEE
T ss_conf 99998