HHsearch alignment for GI: 254780827 and conserved domain: PRK07261

>PRK07261 topology modulation protein; Provisional.
Probab=98.16  E-value=4.2e-05  Score=54.35  Aligned_cols=105  Identities=22%  Similarity=0.259  Sum_probs=66.2

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCC-CHHHHHHHCHHHCCCCHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf             9952786667337999999999733898689995088758-826887600020189813312899999999741266405
Q gi|254780827|r   86 VGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLF-PNAVLTANNLMQRKGFPESYDSNKLLTFLSDVKSGKKKV  164 (311)
Q Consensus        86 IGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~-~n~~l~~~~l~~rkGfPeS~D~~~L~~~L~~lK~G~~~V  164 (311)
T Consensus         3 I~IiG~sGsGKSTlAr~L~~~~------~ip~~~LD~l~w~p~w~-------~~--~~~e~-----~~~~~~~~~~----   58 (171)
T PRK07261          3 IAIIGYSGSGKSTLARFLGQHY------NCPVLHLDQLHFSSNWQ-------ER--DDDDM-----IADISNFLLK----   58 (171)
T ss_pred             EEEECCCCCCHHHHHHHHHHHH------CCCEEEECCEEECCCCE-------EC--CHHHH-----HHHHHHHHHC----
T ss_conf             9998899986899999999987------97979702278889998-------88--89999-----9999999848----


Q ss_pred             EEECCCCCCCCCCCCCEEEECCCCEEEEECCHHC--CCCCCCCCCCCCEEECCCCCEEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf             8740443225658983699868965997061003--57654575777401000231157730889998879988788876
Q gi|254780827|r  165 AVPRYSHSQYDILEGEYDTIIQPDILLIEGINVL--QQNSLSDNQKATPMISDFLDFSIYIDADKRDIHRWYLNRFLKLR  242 (311)
Q Consensus       165 ~~PvYsh~~~D~vp~~~~vi~~pdIIIvEGi~vL--~~~~l~~~~~~~~~vsD~fD~sIyVDad~~~i~~wyi~Rf~~lr  242 (311)
T Consensus        59 -----------------------~~WIiDGny~~~~~~~rl-----------~~aD~iI~Ld~p~~~~l~rvikR~l~~~  104 (171)
T PRK07261         59 -----------------------QDWIIEGNYSNCLYEERM-----------AEADQIIFLNFSRFNCLYRAFKRYLKYR  104 (171)
T ss_pred             -----------------------CCEEEECCCCCHHHHHHH-----------HHCCEEEEECCCHHHHHHHHHHHHHHHC
T ss_conf             -----------------------987994785124777679-----------7799999985849999999999999982


Q ss_pred             HHHCCC
Q ss_conf             652016
Q gi|254780827|r  243 ETAFLN  248 (311)
Q Consensus       243 ~~a~~~  248 (311)
T Consensus       105 ~~~r~~  110 (171)
T PRK07261        105 GKTRPS  110 (171)
T ss_pred             CCCCCC
T ss_conf             775876