HHsearch alignment for GI: 254780827 and conserved domain: PRK07261
>PRK07261 topology modulation protein; Provisional.
Probab=98.16 E-value=4.2e-05 Score=54.35 Aligned_cols=105 Identities=22% Similarity=0.259 Sum_probs=66.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCC-CHHHHHHHCHHHCCCCHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 9952786667337999999999733898689995088758-826887600020189813312899999999741266405
Q gi|254780827|r 86 VGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLF-PNAVLTANNLMQRKGFPESYDSNKLLTFLSDVKSGKKKV 164 (311)
Q Consensus 86 IGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~-~n~~l~~~~l~~rkGfPeS~D~~~L~~~L~~lK~G~~~V 164 (311)
T Consensus 3 I~IiG~sGsGKSTlAr~L~~~~------~ip~~~LD~l~w~p~w~-------~~--~~~e~-----~~~~~~~~~~---- 58 (171)
T PRK07261 3 IAIIGYSGSGKSTLARFLGQHY------NCPVLHLDQLHFSSNWQ-------ER--DDDDM-----IADISNFLLK---- 58 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHH------CCCEEEECCEEECCCCE-------EC--CHHHH-----HHHHHHHHHC----
T ss_conf 9998899986899999999987------97979702278889998-------88--89999-----9999999848----
Q ss_pred EEECCCCCCCCCCCCCEEEECCCCEEEEECCHHC--CCCCCCCCCCCCEEECCCCCEEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf 8740443225658983699868965997061003--57654575777401000231157730889998879988788876
Q gi|254780827|r 165 AVPRYSHSQYDILEGEYDTIIQPDILLIEGINVL--QQNSLSDNQKATPMISDFLDFSIYIDADKRDIHRWYLNRFLKLR 242 (311)
Q Consensus 165 ~~PvYsh~~~D~vp~~~~vi~~pdIIIvEGi~vL--~~~~l~~~~~~~~~vsD~fD~sIyVDad~~~i~~wyi~Rf~~lr 242 (311)
T Consensus 59 -----------------------~~WIiDGny~~~~~~~rl-----------~~aD~iI~Ld~p~~~~l~rvikR~l~~~ 104 (171)
T PRK07261 59 -----------------------QDWIIEGNYSNCLYEERM-----------AEADQIIFLNFSRFNCLYRAFKRYLKYR 104 (171)
T ss_pred -----------------------CCEEEECCCCCHHHHHHH-----------HHCCEEEEECCCHHHHHHHHHHHHHHHC
T ss_conf -----------------------987994785124777679-----------7799999985849999999999999982
Q ss_pred HHHCCC
Q ss_conf 652016
Q gi|254780827|r 243 ETAFLN 248 (311)
Q Consensus 243 ~~a~~~ 248 (311)
T Consensus 105 ~~~r~~ 110 (171)
T PRK07261 105 GKTRPS 110 (171)
T ss_pred CCCCCC
T ss_conf 775876