HHsearch alignment for GI: 254780827 and conserved domain: PRK08118
>PRK08118 topology modulation protein; Reviewed.
Probab=98.23 E-value=1.9e-05 Score=56.63 Aligned_cols=148 Identities=20% Similarity=0.249 Sum_probs=82.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC-HHHHHHHCHHHCCCCH-HHHHHHHHHHHHHHHHCCCCE
Q ss_conf 99527866673379999999997338986899950887588-2688760002018981-331289999999974126640
Q gi|254780827|r 86 VGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFP-NAVLTANNLMQRKGFP-ESYDSNKLLTFLSDVKSGKKK 163 (311)
Q Consensus 86 IGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~-n~~l~~~~l~~rkGfP-eS~D~~~L~~~L~~lK~G~~~ 163 (311)
T Consensus 4 I~IiG~~GsGKSTlAr~L~~~~------~ip~~~LD~l~w~~~w~----------~~~~~e~-----~~~~~~~~~~--- 59 (167)
T PRK08118 4 IILIGSGGSGKSTLARQLGEKL------NIPVHHLDALFWKPNWE----------GVPKEEQ-----RTVQNELVKE--- 59 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHHH------CCCEEECCCEEECCCCC----------CCCHHHH-----HHHHHHHHHC---
T ss_conf 9998899987999999999988------96979644347668994----------6888999-----9999999838---
Q ss_pred EEEECCCCCCCCCCCCCEEEECCCCEEEEECCHHCCCCCCCCCCCCCEEECCCCCEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 58740443225658983699868965997061003576545757774010002311577308899988799887888766
Q gi|254780827|r 164 VAVPRYSHSQYDILEGEYDTIIQPDILLIEGINVLQQNSLSDNQKATPMISDFLDFSIYIDADKRDIHRWYLNRFLKLRE 243 (311)
Q Consensus 164 V~~PvYsh~~~D~vp~~~~vi~~pdIIIvEGi~vL~~~~l~~~~~~~~~vsD~fD~sIyVDad~~~i~~wyi~Rf~~lr~ 243 (311)
T Consensus 60 ------------------------~~WIidGny~~~~~~----------r~~~aD~iI~Ld~p~~~~~~r~~kR~~~~~~ 105 (167)
T PRK08118 60 ------------------------DEWIIDGNYGGTMDI----------RLNAADTIIFLDIPRTICLYRAFKRRVQYRG 105 (167)
T ss_pred ------------------------CCEEEECCCHHHHHH----------HHHHCCEEEEECCCHHHHHHHHHHHHHHHCC
T ss_conf ------------------------987994771779987----------7976999999859899999999999999817
Q ss_pred HHCCCHHHHHHHHHCCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 520167779988605998999999999988--631668999520131366499975
Q gi|254780827|r 244 TAFLNPRSYFHHFTEISEEQSLKIAETAWN--NINLPNLQHNILPTRKRADLILSK 297 (311)
Q Consensus 244 ~a~~~~~s~~~~y~~l~~~ea~~~a~~iW~--~in~pnl~e~I~PTr~rADlIi~k 297 (311)
T Consensus 106 ~~r~d~~~------g~~E~~~~~fl~wi~~~~~~~r~~~~~~l~~~~~~~~vi~lk 155 (167)
T PRK08118 106 KTRPDMGE------GCPEKFDLQFFKWIWEYPKTKRPSILKRLNQLKEDKNVVILK 155 (167)
T ss_pred CCCCCCCC------CCCCCCCHHHHHHHHHCCHHCCHHHHHHHHHCCCCCCEEEEC
T ss_conf 75765689------993625099999998584010199999998556798199977