HHsearch alignment for GI: 254780827 and conserved domain: PRK08118

>PRK08118 topology modulation protein; Reviewed.
Probab=98.23  E-value=1.9e-05  Score=56.63  Aligned_cols=148  Identities=20%  Similarity=0.249  Sum_probs=82.4

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC-HHHHHHHCHHHCCCCH-HHHHHHHHHHHHHHHHCCCCE
Q ss_conf             99527866673379999999997338986899950887588-2688760002018981-331289999999974126640
Q gi|254780827|r   86 VGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFP-NAVLTANNLMQRKGFP-ESYDSNKLLTFLSDVKSGKKK  163 (311)
Q Consensus        86 IGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~-n~~l~~~~l~~rkGfP-eS~D~~~L~~~L~~lK~G~~~  163 (311)
T Consensus         4 I~IiG~~GsGKSTlAr~L~~~~------~ip~~~LD~l~w~~~w~----------~~~~~e~-----~~~~~~~~~~---   59 (167)
T PRK08118          4 IILIGSGGSGKSTLARQLGEKL------NIPVHHLDALFWKPNWE----------GVPKEEQ-----RTVQNELVKE---   59 (167)
T ss_pred             EEEECCCCCCHHHHHHHHHHHH------CCCEEECCCEEECCCCC----------CCCHHHH-----HHHHHHHHHC---
T ss_conf             9998899987999999999988------96979644347668994----------6888999-----9999999838---


Q ss_pred             EEEECCCCCCCCCCCCCEEEECCCCEEEEECCHHCCCCCCCCCCCCCEEECCCCCEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf             58740443225658983699868965997061003576545757774010002311577308899988799887888766
Q gi|254780827|r  164 VAVPRYSHSQYDILEGEYDTIIQPDILLIEGINVLQQNSLSDNQKATPMISDFLDFSIYIDADKRDIHRWYLNRFLKLRE  243 (311)
Q Consensus       164 V~~PvYsh~~~D~vp~~~~vi~~pdIIIvEGi~vL~~~~l~~~~~~~~~vsD~fD~sIyVDad~~~i~~wyi~Rf~~lr~  243 (311)
T Consensus        60 ------------------------~~WIidGny~~~~~~----------r~~~aD~iI~Ld~p~~~~~~r~~kR~~~~~~  105 (167)
T PRK08118         60 ------------------------DEWIIDGNYGGTMDI----------RLNAADTIIFLDIPRTICLYRAFKRRVQYRG  105 (167)
T ss_pred             ------------------------CCEEEECCCHHHHHH----------HHHHCCEEEEECCCHHHHHHHHHHHHHHHCC
T ss_conf             ------------------------987994771779987----------7976999999859899999999999999817


Q ss_pred             HHCCCHHHHHHHHHCCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf             520167779988605998999999999988--631668999520131366499975
Q gi|254780827|r  244 TAFLNPRSYFHHFTEISEEQSLKIAETAWN--NINLPNLQHNILPTRKRADLILSK  297 (311)
Q Consensus       244 ~a~~~~~s~~~~y~~l~~~ea~~~a~~iW~--~in~pnl~e~I~PTr~rADlIi~k  297 (311)
T Consensus       106 ~~r~d~~~------g~~E~~~~~fl~wi~~~~~~~r~~~~~~l~~~~~~~~vi~lk  155 (167)
T PRK08118        106 KTRPDMGE------GCPEKFDLQFFKWIWEYPKTKRPSILKRLNQLKEDKNVVILK  155 (167)
T ss_pred             CCCCCCCC------CCCCCCCHHHHHHHHHCCHHCCHHHHHHHHHCCCCCCEEEEC
T ss_conf             75765689------993625099999998584010199999998556798199977