HHsearch alignment for GI: 254780827 and conserved domain: PRK12337

Probab=97.23  E-value=0.0011  Score=44.82  Aligned_cols=80  Identities=19%  Similarity=0.158  Sum_probs=44.5

Q ss_pred             HHHCCCC-CCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf             8744888-4689999999-8999999999999999989999987167766787679995278666733799999999973
Q gi|254780827|r   32 QLLSFDS-PIDSTEIYKI-YFPLSHLLLINVNSAKITCHQYNKFLNLKEESKIPFVVGITGSVAVGKSTFARILCILLQQ  109 (311)
Q Consensus        32 ~l~~~~d-~i~~~ev~~i-y~pl~~ll~~~~~~~~~~~~~~~~fl~~~~~~k~PfIIGIAG~~asGKST~Ar~L~~lL~~  109 (311)
T Consensus       216 ~L~~~~~~~i~~~elr~~v~~~L---~~~~~~~~----A~rY~lwR~ir~~~~PiiILIGGaSGvGKSTlAseLA---~R  285 (492)
T PRK12337        216 DLRGSGDRVVRRDEIREKVEALL---RDEVGPDV----SARYRLLRVLRKPPRPLHVLLGGVSGTGKSVLAAELA---YR  285 (492)
T ss_pred             HHHHCCCEEEEHHHHHHHHHHHH---HHHCCHHH----HHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHH---HH
T ss_conf             99865887970999999999999---87303889----9999999997356887699960788866888999999---96


Q ss_pred             CCCCCEEEEEECCC
Q ss_conf             38986899950887
Q gi|254780827|r  110 ISNFKVSLITTDGF  123 (311)
Q Consensus       110 ~~~~~V~lis~DgF  123 (311)
T Consensus       286 LGI--~~VIsTDsI  297 (492)
T PRK12337        286 LGI--TRVVPTDAI  297 (492)
T ss_pred             HCC--CCCCCCHHH
T ss_conf             098--810254479