HHsearch alignment for GI: 254780827 and conserved domain: PRK12726
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional.
Probab=97.62 E-value=0.00079 Score=45.75 Aligned_cols=76 Identities=25% Similarity=0.253 Sum_probs=48.7
Q ss_pred HHHHHHHHHHCCCCCCCCCE------EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCHHHC
Q ss_conf 98999998716776678767------999527866673379999999997338986899950887588268876000201
Q gi|254780827|r 65 ITCHQYNKFLNLKEESKIPF------VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLTANNLMQR 138 (311)
Q Consensus 65 ~~~~~~~~fl~~~~~~k~Pf------IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~~~~l~~r 138 (311)
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~l~~g~VIaLVGvnGvGKTTTiAKLA~~l~~~-gkkV~LVAaDTF-RaAAiEQLk~~g~r 259 (407)
T PRK12726 182 DITDWFVPYLSGKLAVEDSFDLSNHRIISLIGQTGVGKTTTLVKLGWQLLKQ-NRTVGFITTDTF-RSGAVEQFQGYADK 259 (407)
T ss_pred HHHHHHHHHHCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCC-CHHHHHHHHHHHHH
T ss_conf 4068999975389770320230369089998999897899999999999977-991799970667-78899999999999
Q ss_pred CCCH
Q ss_conf 8981
Q gi|254780827|r 139 KGFP 142 (311)
Q Consensus 139 kGfP 142 (311)
T Consensus 260 lgVp 263 (407)
T PRK12726 260 LDVE 263 (407)
T ss_pred HCCE
T ss_conf 7964