HHsearch alignment for GI: 254780827 and conserved domain: PRK13900
>PRK13900 type IV secretion system ATPase VirB11; Provisional.
Probab=96.42 E-value=0.011 Score=37.90 Aligned_cols=88 Identities=18% Similarity=0.183 Sum_probs=46.5
Q ss_pred HHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCH
Q ss_conf 31479998898999987448884689999999899999999999999998999998716776678767999527866673
Q gi|254780827|r 17 VHSKFSSILSKKISNQLLSFDSPIDSTEIYKIYFPLSHLLLINVNSAKITCHQYNKFLNLKEESKIPFVVGITGSVAVGK 96 (311)
Q Consensus 17 ~~~~~~~~l~~~~~~~l~~~~d~i~~~ev~~iy~pl~~ll~~~~~~~~~~~~~~~~fl~~~~~~k~PfIIGIAG~~asGK 96 (311)
T Consensus 105 IRk~~~~~~tl~dl~~~G~~~~~~~~----~~~~~~~~~l~~~~~-----~~~~~~fL~~aV~~r~--NilI~G~TgSGK 173 (332)
T PRK13900 105 IRKPSGMQLTLDDYEKMGAFDETATE----SLVDEDDVILNELLA-----EKKIKEFLEHAVISKK--NIIISGGTSTGK 173 (332)
T ss_pred EECCCCCCCCHHHHHHCCCCCHHHHH----CCCCHHHHHHHHHHH-----HHHHHHHHHHHHHCCC--CEEEECCCCCCH
T ss_conf 97888888999999864986655542----013415677887641-----0579999999986487--199988889889
Q ss_pred HHHHHHHHHHHHHCC-CCCEEEE
Q ss_conf 379999999997338-9868999
Q gi|254780827|r 97 STFARILCILLQQIS-NFKVSLI 118 (311)
Q Consensus 97 ST~Ar~L~~lL~~~~-~~~V~li 118 (311)
T Consensus 174 TTll~---aL~~~ip~~eRiitI 193 (332)
T PRK13900 174 TTFTN---AALREIPAIERLITV 193 (332)
T ss_pred HHHHH---HHHHCCCCCCCEEEE
T ss_conf 99999---998358953535663