HHsearch alignment for GI: 254780827 and conserved domain: PRK13900

>PRK13900 type IV secretion system ATPase VirB11; Provisional.
Probab=96.42  E-value=0.011  Score=37.90  Aligned_cols=88  Identities=18%  Similarity=0.183  Sum_probs=46.5

Q ss_pred             HHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCH
Q ss_conf             31479998898999987448884689999999899999999999999998999998716776678767999527866673
Q gi|254780827|r   17 VHSKFSSILSKKISNQLLSFDSPIDSTEIYKIYFPLSHLLLINVNSAKITCHQYNKFLNLKEESKIPFVVGITGSVAVGK   96 (311)
Q Consensus        17 ~~~~~~~~l~~~~~~~l~~~~d~i~~~ev~~iy~pl~~ll~~~~~~~~~~~~~~~~fl~~~~~~k~PfIIGIAG~~asGK   96 (311)
T Consensus       105 IRk~~~~~~tl~dl~~~G~~~~~~~~----~~~~~~~~~l~~~~~-----~~~~~~fL~~aV~~r~--NilI~G~TgSGK  173 (332)
T PRK13900        105 IRKPSGMQLTLDDYEKMGAFDETATE----SLVDEDDVILNELLA-----EKKIKEFLEHAVISKK--NIIISGGTSTGK  173 (332)
T ss_pred             EECCCCCCCCHHHHHHCCCCCHHHHH----CCCCHHHHHHHHHHH-----HHHHHHHHHHHHHCCC--CEEEECCCCCCH
T ss_conf             97888888999999864986655542----013415677887641-----0579999999986487--199988889889


Q ss_pred             HHHHHHHHHHHHHCC-CCCEEEE
Q ss_conf             379999999997338-9868999
Q gi|254780827|r   97 STFARILCILLQQIS-NFKVSLI  118 (311)
Q Consensus        97 ST~Ar~L~~lL~~~~-~~~V~li  118 (311)
T Consensus       174 TTll~---aL~~~ip~~eRiitI  193 (332)
T PRK13900        174 TTFTN---AALREIPAIERLITV  193 (332)
T ss_pred             HHHHH---HHHHCCCCCCCEEEE
T ss_conf             99999---998358953535663