HHsearch alignment for GI: 254780827 and conserved domain: TIGR00017
>TIGR00017 cmk cytidylate kinase; InterPro: IPR003136 This family consists of cytidylate kinase (2.7.4.14 from EC), which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors .; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=97.02 E-value=0.00041 Score=47.69 Aligned_cols=135 Identities=17% Similarity=0.283 Sum_probs=69.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCHHHCCCCHHHHHHHHHHHHHHHHH----
Q ss_conf 6799952786667337999999999733898689995088758826887600020189813312899999999741----
Q gi|254780827|r 83 PFVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLTANNLMQRKGFPESYDSNKLLTFLSDVK---- 158 (311)
Q Consensus 83 PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~~~~l~~rkGfPeS~D~~~L~~~L~~lK---- 158 (311)
T Consensus 2 ~~~IAIDGPs~aGKStvak~~A~~L~------y~yldsG~mYR~~a~~~qrsL~~~~d~---~~E~~L~~L~~~~di~f~ 72 (223)
T TIGR00017 2 KMIIAIDGPSGAGKSTVAKAVAEKLG------YKYLDSGAMYRALALAAQRSLQNRVDL---TDEDALLELISQLDIRFI 72 (223)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC------CEEECCCHHHHHHHHHHHHHHHCCCCC---CCHHHHHHHHHHCCCEEE
T ss_conf 86376237764655789999998629------502144328999999999887406885---684889999863260442
Q ss_pred C--CCCEEE-------EECCCCCCCC---------CCC----CCEEEECCC--CEEEEECCHHCCCCCCCCCCCCCEEEC
Q ss_conf 2--664058-------7404432256---------589----836998689--659970610035765457577740100
Q gi|254780827|r 159 S--GKKKVA-------VPRYSHSQYD---------ILE----GEYDTIIQP--DILLIEGINVLQQNSLSDNQKATPMIS 214 (311)
Q Consensus 159 ~--G~~~V~-------~PvYsh~~~D---------~vp----~~~~vi~~p--dIIIvEGi~vL~~~~l~~~~~~~~~vs 214 (311)
T Consensus 73 ~~~~~~~v~~nG~DV~~~I~t~~v~~~aS~~A~~~~vR~~~~~~Qq~~~~~sd~g~v~dGR----------D--iGTvVf 140 (223)
T TIGR00017 73 PTAGEVKVFLNGEDVSEAIRTQEVANLASKVAAFPKVREILLKRQQKLAKNSDDGIVADGR----------D--IGTVVF 140 (223)
T ss_pred CCCCCEEEEECCCCHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEECC----------C--CCCEEC
T ss_conf 1577506887077713220683589999987237779999999999987515897588455----------2--374467
Q ss_pred CCCCEEEEEECCHHHHHHHHHHHH
Q ss_conf 023115773088999887998878
Q gi|254780827|r 215 DFLDFSIYIDADKRDIHRWYLNRF 238 (311)
Q Consensus 215 D~fD~sIyVDad~~~i~~wyi~Rf 238 (311)
T Consensus 141 PnA~~KiFLdAsve~RA~RR~~~~ 164 (223)
T TIGR00017 141 PNAELKIFLDASVEERAKRRYKDL 164 (223)
T ss_pred CCCCCCEEECCCHHHHHHHHHHHH
T ss_conf 887513243178789988769998