HHsearch alignment for GI: 254780827 and conserved domain: TIGR00174
>TIGR00174 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2.5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) .; GO: 0004811 tRNA isopentenyltransferase activity, 0005524 ATP binding, 0008033 tRNA processing.
Probab=95.50 E-value=0.013 Score=37.48 Aligned_cols=66 Identities=27% Similarity=0.390 Sum_probs=38.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCC-C---------CHH-HHH--HHCHHHCCCCHHHHHHHHHH
Q ss_conf 9995278666733799999999973389868999508875-8---------826-887--60002018981331289999
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFL-F---------PNA-VLT--ANNLMQRKGFPESYDSNKLL 151 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~-~---------~n~-~l~--~~~l~~rkGfPeS~D~~~L~ 151 (311)
T Consensus 1 vi~i~GpTAvGKs~L~i~La~------~lnaEiI~~DS~qiYK~~dIgtaKp~~~e~~~ipH~l~Dildp~e~y~~~~F~ 74 (307)
T TIGR00174 1 VIVIMGPTAVGKSNLAIQLAK------KLNAEIISVDSMQIYKGMDIGTAKPSLQERKGIPHHLIDILDPSESYSAADFQ 74 (307)
T ss_pred CEEEEECCCCCHHHHHHHHHH------HCCEEEEECCCHHHHCCCCCCCCCCCHHHHCCCCCEEEECCCCCCCCCCHHHH
T ss_conf 967740885547789999887------68957874350232237875357889687534981585134712003708899
Q ss_pred HHHHH
Q ss_conf 99997
Q gi|254780827|r 152 TFLSD 156 (311)
Q Consensus 152 ~~L~~ 156 (311)
T Consensus 75 ~~~~~ 79 (307)
T TIGR00174 75 TQALN 79 (307)
T ss_pred HHHHH
T ss_conf 99999