HHsearch alignment for GI: 254780827 and conserved domain: TIGR00235

>TIGR00235 udk uridine kinase; InterPro: IPR000764 Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP A cDNA for uridine kinase from mouse brain was found which encodes a protein of 277 amino acids. A truncated form of the cDNA was expressed in Escherichia coli, and shown to display uridine kinase activity and to readily form a tetramer, the most active form of the wild-type enzyme. Sequence analysis has identified three ATP-binding site consensus motifs. The predicted secondary structure, and sequence comparison with kinases of known structure, is consistent with uridine kinase having the alpha/beta core nucleotide-binding fold common to many kinases .; GO: 0005524 ATP binding, 0016773 phosphotransferase activity alcohol group as acceptor.
Probab=100.00  E-value=0  Score=333.12  Aligned_cols=193  Identities=23%  Similarity=0.390  Sum_probs=172.8

Q ss_pred             CCCCCEEEEEECCCCCCH----HHHHHHHHHHHHHCCC--CCEEEEEECCCCCCH--HHHHH-HCHHHCCCCHHHHHHHH
Q ss_conf             678767999527866673----3799999999973389--868999508875882--68876-00020189813312899
Q gi|254780827|r   79 ESKIPFVVGITGSVAVGK----STFARILCILLQQISN--FKVSLITTDGFLFPN--AVLTA-NNLMQRKGFPESYDSNK  149 (311)
Q Consensus        79 ~~k~PfIIGIAG~~asGK----ST~Ar~L~~lL~~~~~--~~V~lis~DgF~~~n--~~l~~-~~l~~rkGfPeS~D~~~  149 (311)
T Consensus         6 ~~~~c~iigI~GgSgSGKs~iATtV~~~i~~~~---~~kv~~~~~I~~D~YYK~~GP~~~~~~~r~~~NfDHP~AfD~~L   82 (220)
T TIGR00235         6 PKGTCIIIGISGGSGSGKSLIATTVARKIYEQL---GKKVLEIVLISQDNYYKDQGPSDLEMAERKKTNFDHPDAFDNDL   82 (220)
T ss_pred             CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCCCCCCCHHHHHHHCCCCCCCHHCCHHH
T ss_conf             988617997017661015678999999999983---14001457750324458898873124643125889800303799


Q ss_pred             HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCHHCCCCCCCCCCCCCEEECCCCCEEEEEECCHHH
Q ss_conf             99999974126640587404432256589836998689659970610035765457577740100023115773088999
Q gi|254780827|r  150 LLTFLSDVKSGKKKVAVPRYSHSQYDILEGEYDTIIQPDILLIEGINVLQQNSLSDNQKATPMISDFLDFSIYIDADKRD  229 (311)
Q Consensus       150 L~~~L~~lK~G~~~V~~PvYsh~~~D~vp~~~~vi~~pdIIIvEGi~vL~~~~l~~~~~~~~~vsD~fD~sIyVDad~~~  229 (311)
T Consensus        83 l~~Hl~nLk~g~-~~~~P~Ydyv~HtRv~~eT~~~~P~~VvIlEGi~~l~D~R----------l~~L~dlkifvDt~~D~  151 (220)
T TIGR00235        83 LYEHLKNLKNGS-AIDVPVYDYVNHTRVKKETVHVEPKDVVILEGILLLTDER----------LRDLMDLKIFVDTPLDI  151 (220)
T ss_pred             HHHHHHHHHCCC-EECCCCCCCCCEECCCCCCEEECCEEEEEEECCHHHHHHH----------HHHHHCCEEEEECCCHH
T ss_conf             999999984688-0224542541002025562687350689970618888799----------98871823677468303


Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCEE
Q ss_conf             887998878887665201677799886059989999999999886316689995201313664999758998464
Q gi|254780827|r  230 IHRWYLNRFLKLRETAFLNPRSYFHHFTEISEEQSLKIAETAWNNINLPNLQHNILPTRKRADLILSKGEDHSVK  304 (311)
Q Consensus       230 i~~wyi~Rf~~lr~~a~~~~~s~~~~y~~l~~~ea~~~a~~iW~~in~pnl~e~I~PTr~rADlIi~k~~~H~v~  304 (311)
T Consensus       152 rliRRl~RD~~~RG---R~~dSvI~Q----------------y~~~V~Pm~~~FvEP~K~~AD~IiP~g~~n~~A  207 (220)
T TIGR00235       152 RLIRRLERDIEERG---RSLDSVIDQ----------------YRKTVRPMYLQFVEPTKQYADLIIPEGGKNEVA  207 (220)
T ss_pred             HHHHHHHHHHHHCC---CCHHHHHHH----------------HHHHCCCCCCCCCCCCCCCCCEEECCCCCCHHH
T ss_conf             25656565575428---978899999----------------998534621014550101466762589881688