HHsearch alignment for GI: 254780827 and conserved domain: TIGR00235
>TIGR00235 udk uridine kinase; InterPro: IPR000764 Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP A cDNA for uridine kinase from mouse brain was found which encodes a protein of 277 amino acids. A truncated form of the cDNA was expressed in Escherichia coli, and shown to display uridine kinase activity and to readily form a tetramer, the most active form of the wild-type enzyme. Sequence analysis has identified three ATP-binding site consensus motifs. The predicted secondary structure, and sequence comparison with kinases of known structure, is consistent with uridine kinase having the alpha/beta core nucleotide-binding fold common to many kinases .; GO: 0005524 ATP binding, 0016773 phosphotransferase activity alcohol group as acceptor.
Probab=100.00 E-value=0 Score=333.12 Aligned_cols=193 Identities=23% Similarity=0.390 Sum_probs=172.8
Q ss_pred CCCCCEEEEEECCCCCCH----HHHHHHHHHHHHHCCC--CCEEEEEECCCCCCH--HHHHH-HCHHHCCCCHHHHHHHH
Q ss_conf 678767999527866673----3799999999973389--868999508875882--68876-00020189813312899
Q gi|254780827|r 79 ESKIPFVVGITGSVAVGK----STFARILCILLQQISN--FKVSLITTDGFLFPN--AVLTA-NNLMQRKGFPESYDSNK 149 (311)
Q Consensus 79 ~~k~PfIIGIAG~~asGK----ST~Ar~L~~lL~~~~~--~~V~lis~DgF~~~n--~~l~~-~~l~~rkGfPeS~D~~~ 149 (311)
T Consensus 6 ~~~~c~iigI~GgSgSGKs~iATtV~~~i~~~~---~~kv~~~~~I~~D~YYK~~GP~~~~~~~r~~~NfDHP~AfD~~L 82 (220)
T TIGR00235 6 PKGTCIIIGISGGSGSGKSLIATTVARKIYEQL---GKKVLEIVLISQDNYYKDQGPSDLEMAERKKTNFDHPDAFDNDL 82 (220)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCCCCCCCHHHHHHHCCCCCCCHHCCHHH
T ss_conf 988617997017661015678999999999983---14001457750324458898873124643125889800303799
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCHHCCCCCCCCCCCCCEEECCCCCEEEEEECCHHH
Q ss_conf 99999974126640587404432256589836998689659970610035765457577740100023115773088999
Q gi|254780827|r 150 LLTFLSDVKSGKKKVAVPRYSHSQYDILEGEYDTIIQPDILLIEGINVLQQNSLSDNQKATPMISDFLDFSIYIDADKRD 229 (311)
Q Consensus 150 L~~~L~~lK~G~~~V~~PvYsh~~~D~vp~~~~vi~~pdIIIvEGi~vL~~~~l~~~~~~~~~vsD~fD~sIyVDad~~~ 229 (311)
T Consensus 83 l~~Hl~nLk~g~-~~~~P~Ydyv~HtRv~~eT~~~~P~~VvIlEGi~~l~D~R----------l~~L~dlkifvDt~~D~ 151 (220)
T TIGR00235 83 LYEHLKNLKNGS-AIDVPVYDYVNHTRVKKETVHVEPKDVVILEGILLLTDER----------LRDLMDLKIFVDTPLDI 151 (220)
T ss_pred HHHHHHHHHCCC-EECCCCCCCCCEECCCCCCEEECCEEEEEEECCHHHHHHH----------HHHHHCCEEEEECCCHH
T ss_conf 999999984688-0224542541002025562687350689970618888799----------98871823677468303
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCEE
Q ss_conf 887998878887665201677799886059989999999999886316689995201313664999758998464
Q gi|254780827|r 230 IHRWYLNRFLKLRETAFLNPRSYFHHFTEISEEQSLKIAETAWNNINLPNLQHNILPTRKRADLILSKGEDHSVK 304 (311)
Q Consensus 230 i~~wyi~Rf~~lr~~a~~~~~s~~~~y~~l~~~ea~~~a~~iW~~in~pnl~e~I~PTr~rADlIi~k~~~H~v~ 304 (311)
T Consensus 152 rliRRl~RD~~~RG---R~~dSvI~Q----------------y~~~V~Pm~~~FvEP~K~~AD~IiP~g~~n~~A 207 (220)
T TIGR00235 152 RLIRRLERDIEERG---RSLDSVIDQ----------------YRKTVRPMYLQFVEPTKQYADLIIPEGGKNEVA 207 (220)
T ss_pred HHHHHHHHHHHHCC---CCHHHHHHH----------------HHHHCCCCCCCCCCCCCCCCCEEECCCCCCHHH
T ss_conf 25656565575428---978899999----------------998534621014550101466762589881688