HHsearch alignment for GI: 254780827 and conserved domain: TIGR01447
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit; InterPro: IPR006344 This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. C-terminal part of the protein matches a domain found in viral RNA helicase, superfamily 1, IPR000606 from INTERPRO. ; GO: 0008854 exodeoxyribonuclease V activity, 0009338 exodeoxyribonuclease V complex.
Probab=96.53 E-value=0.0022 Score=42.73 Aligned_cols=134 Identities=21% Similarity=0.197 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHH-HHHHHHHHHCCC-----C
Q ss_conf 9999989999999999999999----89999987167766787679995278666733799-999999973389-----8
Q gi|254780827|r 44 EIYKIYFPLSHLLLINVNSAKI----TCHQYNKFLNLKEESKIPFVVGITGSVAVGKSTFA-RILCILLQQISN-----F 113 (311)
Q Consensus 44 ev~~iy~pl~~ll~~~~~~~~~----~~~~~~~fl~~~~~~k~PfIIGIAG~~asGKST~A-r~L~~lL~~~~~-----~ 113 (311)
T Consensus 205 qr~~~~~~l~~~f~~~~~~~~~~~~D~Q~~a~~-----~aL~~~-f~li~GGPGTGKTTTv~~LL~al~~~~~~~G~~~~ 278 (753)
T TIGR01447 205 QREAILAILENLFPLLNEQNGRKVTDWQKVAVA-----LALKSN-FSLITGGPGTGKTTTVARLLLALIKQSPKQGKPRL 278 (753)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHCC-EEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCE
T ss_conf 889999999998542104544311379999999-----986087-68998798897789999999999998986499740
Q ss_pred CEEEEEECCCCCCHHHHHH------HCHHHCC---CCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEE
Q ss_conf 6899950887588268876------0002018---981331289999999974126640587404432256589836998
Q gi|254780827|r 114 KVSLITTDGFLFPNAVLTA------NNLMQRK---GFPESYDSNKLLTFLSDVKSGKKKVAVPRYSHSQYDILEGEYDTI 184 (311)
Q Consensus 114 ~V~lis~DgF~~~n~~l~~------~~l~~rk---GfPeS~D~~~L~~~L~~lK~G~~~V~~PvYsh~~~D~vp~~~~vi 184 (311)
T Consensus 279 ~I~l~APTG--KAa~RL~esl~~~~~~L~~~~~aid~~~~~~~~~~~~TiHrLL-G~~~I~~~~fr~h~~N~L~------ 349 (753)
T TIGR01447 279 RIALAAPTG--KAAARLAESLRKAVKKLAAENMAIDEDLIAALPSEATTIHRLL-GIKPIDTKRFRHHERNPLP------ 349 (753)
T ss_pred EEEEECCCH--HHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHH-CCCCCCCCCCCCCCCCCCC------
T ss_conf 478866844--7999999999988632234236658798548720456888861-6614787677677778898------
Q ss_pred CCCCEEEE-EC
Q ss_conf 68965997-06
Q gi|254780827|r 185 IQPDILLI-EG 194 (311)
Q Consensus 185 ~~pdIIIv-EG 194 (311)
T Consensus 350 --~DVLvvDEa 358 (753)
T TIGR01447 350 --LDVLVVDEA 358 (753)
T ss_pred --CCEEEECCC
T ss_conf --552787060