HHsearch alignment for GI: 254780827 and conserved domain: TIGR02173
>TIGR02173 cyt_kin_arch cytidylate kinase, putative; InterPro: IPR011892 Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by IPR003136 from INTERPRO.; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=98.10 E-value=5.2e-06 Score=60.51 Aligned_cols=113 Identities=22% Similarity=0.304 Sum_probs=68.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCHHHCCCCHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 99952786667337999999999733898689995088758826887600020189813312899999999741266405
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLTANNLMQRKGFPESYDSNKLLTFLSDVKSGKKKV 164 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~~~~l~~rkGfPeS~D~~~L~~~L~~lK~G~~~V 164 (311)
T Consensus 2 ~I~ISGpPGSGktTvA~~lA~~Ls------l~~iSa-G~--------iRelA~~~Gl-----------dl~E~~~ae--- 52 (173)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLS------LKLISA-GD--------IRELAEKMGL-----------DLAESKYAE--- 52 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC------CCEECC-CH--------HHHHHHHCCC-----------CHHHHHHHC---
T ss_conf 788735896864789999998639------831202-00--------7889864298-----------877734430---
Q ss_pred EEECCCCCCCCCCCCCEEEECCCCEEEEECCHHCCCCCCCCCCCCCEEE--CCCCCEEEEEECCHHHHHHHHHHHHHH
Q ss_conf 8740443225658983699868965997061003576545757774010--002311577308899988799887888
Q gi|254780827|r 165 AVPRYSHSQYDILEGEYDTIIQPDILLIEGINVLQQNSLSDNQKATPMI--SDFLDFSIYIDADKRDIHRWYLNRFLK 240 (311)
Q Consensus 165 ~~PvYsh~~~D~vp~~~~vi~~pdIIIvEGi~vL~~~~l~~~~~~~~~v--sD~fD~sIyVDad~~~i~~wyi~Rf~~ 240 (311)
T Consensus 53 e~~eIDk~iD~~~---~E~A~~~~nvvlEsr-l----------agW~~~~nG~yaD~~iyL~A~levRA~RIA~Re~k 116 (173)
T TIGR02173 53 ENPEIDKKIDRRI---REIAEKEKNVVLESR-L----------AGWILKKNGEYADVKIYLKAPLEVRARRIAKRENK 116 (173)
T ss_pred CCCCCCHHHHHHH---HHHHCCCCCEEEEEH-H----------HHHHCCCCCCCCCEEEEECCCHHHHHHHHHHCCCC
T ss_conf 5863116753788---554304896688520-5----------43311578896756788608833324332113688