HHsearch alignment for GI: 254780827 and conserved domain: TIGR02204
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein; InterPro: IPR011918 This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins ..
Probab=96.65 E-value=0.0019 Score=43.12 Aligned_cols=68 Identities=32% Similarity=0.466 Sum_probs=43.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCC----------------------CCCHHHHHHHCHHHCCCCH
Q ss_conf 999527866673379999999997338986899950887----------------------5882688760002018981
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGF----------------------LFPNAVLTANNLMQRKGFP 142 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF----------------------~~~n~~l~~~~l~~rkGfP 142 (311)
T Consensus 368 tvAlVGPSGAGKSTlf----~LLLRFYDP~~G~ilLDGvd~r~~dP~~lR~~~ALVpQdp~lFa~Sv~eN----IRyGrp 439 (576)
T TIGR02204 368 TVALVGPSGAGKSTLF----QLLLRFYDPQSGRILLDGVDIRDLDPADLRARIALVPQDPALFAASVLEN----IRYGRP 439 (576)
T ss_pred EEEEECCCCCHHHHHH----HHHHHCCCCCCCEEEECCCCHHHCCCHHHHHHCCCCCCCCCCCHHCCHHH----HCCCCC
T ss_conf 5887668876279999----99986048887657746641401680878834440258864102030442----135996
Q ss_pred HHHHHHHHH--------HHHHHHHCC
Q ss_conf 331289999--------999974126
Q gi|254780827|r 143 ESYDSNKLL--------TFLSDVKSG 160 (311)
Q Consensus 143 eS~D~~~L~--------~~L~~lK~G 160 (311)
T Consensus 440 DAs~~~V~~AA~aA~A~EFI~~LP~G 465 (576)
T TIGR02204 440 DASDEEVEAAARAAHAHEFISALPEG 465 (576)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 66668999999875410156518875