HHsearch alignment for GI: 254780827 and conserved domain: TIGR02525
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ; InterPro: IPR013364 Proteins in this entry are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase (IPR013363 from INTERPRO) of a type-IV secretion-like system of the obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii..
Probab=96.63 E-value=0.0018 Score=43.33 Aligned_cols=125 Identities=23% Similarity=0.271 Sum_probs=68.5
Q ss_pred EEECCCCCCHHHHHH-HHHHHHHHCCCCCEEEEEE--------CCCCCC-HHHHH--------HHCHHH---CC-----C
Q ss_conf 952786667337999-9999997338986899950--------887588-26887--------600020---18-----9
Q gi|254780827|r 87 GITGSVAVGKSTFAR-ILCILLQQISNFKVSLITT--------DGFLFP-NAVLT--------ANNLMQ---RK-----G 140 (311)
Q Consensus 87 GIAG~~asGKST~Ar-~L~~lL~~~~~~~V~lis~--------DgF~~~-n~~l~--------~~~l~~---rk-----G 140 (311)
T Consensus 153 LiCG~TGSGKSTl~AaiY~~~l~t~pdRKivT~EDPvEY~L~~~~~~l~ap~Q~~IGRDv~sFa~Glr~~GlRR~P~IiG 232 (374)
T TIGR02525 153 LICGETGSGKSTLAAAIYRHCLETYPDRKIVTYEDPVEYILGSPDDLLPAPAQSEIGRDVESFAEGLRLAGLRRAPKIIG 232 (374)
T ss_pred EECCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCEEEECCCCCCHHCCCCCHHCCCCHHHHHHHHHHCCCCCCCCEEE
T ss_conf 22177897289999999998507488970798657721231885201027630110687678862320124534885344
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEE----EECCCCEEEEECC---------HHCCCCCCCCCC
Q ss_conf 813312899999999741266405874044322565898369----9868965997061---------003576545757
Q gi|254780827|r 141 FPESYDSNKLLTFLSDVKSGKKKVAVPRYSHSQYDILEGEYD----TIIQPDILLIEGI---------NVLQQNSLSDNQ 207 (311)
Q Consensus 141 fPeS~D~~~L~~~L~~lK~G~~~V~~PvYsh~~~D~vp~~~~----vi~~pdIIIvEGi---------~vL~~~~l~~~~ 207 (311)
T Consensus 233 vGE~rd~et~~AAV~AG~~GHf~LG------TLH~~spGeA~sR~l~~~P~e~--Re~~A~dlLs~l~yiiVQ~Ll~T~D 304 (374)
T TIGR02525 233 VGEIRDLETFQAAVLAGQSGHFCLG------TLHVKSPGEAISRCLQMVPPEM--REAIAFDLLSVLQYIIVQKLLRTTD 304 (374)
T ss_pred ECCHHHHHHHHHHHHHCCCCCCCCC------CCCCCCCHHHHHHHHHCCCCHH--HHHHHHHHHHHHCEEEEEEEECCCC
T ss_conf 1022556789999985156753100------1132473247888752378225--8999999987621123543311689
Q ss_pred CCCEEECCCCCE
Q ss_conf 774010002311
Q gi|254780827|r 208 KATPMISDFLDF 219 (311)
Q Consensus 208 ~~~~~vsD~fD~ 219 (311)
T Consensus 305 G~RqAVREYiv~ 316 (374)
T TIGR02525 305 GKRQAVREYIVF 316 (374)
T ss_pred CCEEEEEEEEEE
T ss_conf 973588988887